data_ZPN # _chem_comp.id ZPN _chem_comp.name "(2Z,4E)-N-[(S)-[(1S,2E,5S,8E,10Z,17S)-3,11-dimethyl-19-methylidene-7,13-dioxo-6,21-dioxabicyclo[15.3.1]henicosa-2,8,10-trien-5-yl](hydroxy)methyl]hexa-2,4-dienamide" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C29 H39 N O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "(-)-ZAMPANOLIDE (Bound form)" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2012-12-20 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 497.623 _chem_comp.one_letter_code ? _chem_comp.three_letter_code ZPN _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4I4T _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal ZPN C1 C1 C 0 1 N N N N N N -0.054 -2.210 -39.137 -1.086 1.273 -0.057 C1 ZPN 1 ZPN O1 O1 O 0 1 N N N N N N 0.754 -3.142 -39.137 -1.184 1.359 -1.267 O1 ZPN 2 ZPN C2 C2 C 0 1 N N N N N N -0.593 -1.579 -40.331 -0.438 2.305 0.667 C2 ZPN 3 ZPN C3 C3 C 0 1 N N N N N N -0.072 -1.774 -41.555 0.347 3.179 -0.003 C3 ZPN 4 ZPN C4 C4 C 0 1 N N N N N N -0.591 -1.001 -42.668 1.046 4.256 0.695 C4 ZPN 5 ZPN C5 C5 C 0 1 N N N N N N -0.049 -1.062 -43.887 2.321 4.510 0.376 C5 ZPN 6 ZPN C21 C21 C 0 1 N N N N N N -0.404 -0.045 -44.934 3.055 5.627 1.067 C21 ZPN 7 ZPN C6 C6 C 0 1 N N N N N N 1.190 -1.877 -44.116 3.019 3.669 -0.660 C6 ZPN 8 ZPN C7 C7 C 0 1 N N N N N N 2.332 -0.915 -44.227 4.313 3.143 -0.096 C7 ZPN 9 ZPN O7 O7 O 0 1 N N N N N N 2.993 -0.862 -45.260 5.282 3.862 -0.042 O7 ZPN 10 ZPN C8 C8 C 0 1 N N N N N N 2.270 0.260 -43.298 4.402 1.724 0.402 C8 ZPN 11 ZPN C9 C9 C 0 1 N N N N N N 3.569 0.360 -42.495 4.562 0.774 -0.785 C9 ZPN 12 ZPN C10 C10 C 0 1 N N N N N N 3.480 1.616 -41.608 5.555 -0.334 -0.431 C10 ZPN 13 ZPN C11 C11 C 0 1 N N S N N N 3.800 1.468 -40.117 4.896 -1.697 -0.654 C11 ZPN 14 ZPN C12 C12 C 0 1 N N N N N N 4.170 2.871 -39.626 5.812 -2.798 -0.117 C12 ZPN 15 ZPN C13 C13 C 0 1 N N N N N N 4.236 2.904 -38.123 5.004 -3.738 0.742 C13 ZPN 16 ZPN C22 C22 C 0 1 N N N N N N 5.302 3.384 -37.487 5.502 -4.201 1.861 C22 ZPN 17 ZPN C14 C14 C 0 1 N N N N N N 3.097 2.247 -37.403 3.619 -4.141 0.304 C14 ZPN 18 ZPN C15 C15 C 0 1 N N S N N N 2.883 0.851 -38.012 2.874 -2.912 -0.222 C15 ZPN 19 ZPN O11 O11 O 0 1 N N N N N N 2.651 0.994 -39.419 3.648 -1.739 0.041 O11 ZPN 20 ZPN C16 C16 C 0 1 N N N N N N 1.688 0.203 -37.363 1.537 -2.787 0.462 C16 ZPN 21 ZPN C17 C17 C 0 1 N N N N N N 1.678 -1.038 -36.850 0.528 -2.214 -0.154 C17 ZPN 22 ZPN C23 C23 C 0 1 N N N N N N 2.904 -1.881 -36.635 0.707 -1.696 -1.558 C23 ZPN 23 ZPN C18 C18 C 0 1 N N N N N N 0.547 -1.481 -35.994 -0.806 -2.085 0.536 C18 ZPN 24 ZPN C19 C19 C 0 1 N N S N N N -0.469 -2.350 -36.766 -1.658 -1.021 -0.159 C19 ZPN 25 ZPN O19 O19 O 0 1 N N N N N N -0.870 -2.042 -38.104 -1.597 0.203 0.576 O19 ZPN 26 ZPN C20 C20 C 0 1 N N S N N N -1.492 -3.098 -35.916 -3.109 -1.499 -0.232 C20 ZPN 27 ZPN O20 O20 O 0 1 N N N N N N -2.004 -4.268 -36.540 -3.172 -2.719 -0.973 O20 ZPN 28 ZPN N20 N20 N 0 1 N N N N N N -2.533 -2.077 -35.747 -3.926 -0.481 -0.897 N20 ZPN 29 ZPN "C1'" "C1'" C 0 1 N N N N N N -3.376 -2.125 -34.693 -5.165 -0.207 -0.441 "C1'" ZPN 30 ZPN "O1'" "O1'" O 0 1 N N N N N N -3.223 -3.023 -33.847 -5.604 -0.805 0.523 "O1'" ZPN 31 ZPN "C2'" "C2'" C 0 1 N N N N N N -4.368 -1.047 -34.693 -5.980 0.809 -1.106 "C2'" ZPN 32 ZPN "C3'" "C3'" C 0 1 N N N N N N -5.409 -0.980 -33.827 -7.259 1.010 -0.717 "C3'" ZPN 33 ZPN "C4'" "C4'" C 0 1 N N N N N N -5.513 -1.770 -32.607 -7.882 0.101 0.246 "C4'" ZPN 34 ZPN "C5'" "C5'" C 0 1 N N N N N N -6.593 -1.668 -31.814 -9.097 0.370 0.728 "C5'" ZPN 35 ZPN "C6'" "C6'" C 0 1 N N N N N N -6.821 -2.507 -30.589 -9.738 -0.566 1.719 "C6'" ZPN 36 ZPN H21 H21 H 0 1 N N N N N N -1.448 -0.926 -40.230 -0.541 2.374 1.737 H21 ZPN 37 ZPN H31 H31 H 0 1 N N N N N N 0.719 -2.493 -41.707 0.453 3.082 -1.074 H31 ZPN 38 ZPN H41 H41 H 0 1 N N N N N N -1.442 -0.356 -42.505 0.573 4.807 1.482 H41 ZPN 39 ZPN H211 H211 H 0 0 N N N N N N -1.327 0.476 -44.641 2.391 6.108 1.786 H211 ZPN 40 ZPN H212 H212 H 0 0 N N N N N N 0.414 0.684 -45.029 3.923 5.224 1.588 H212 ZPN 41 ZPN H213 H213 H 0 0 N N N N N N -0.559 -0.551 -45.899 3.382 6.359 0.328 H213 ZPN 42 ZPN H62 H62 H 0 1 N N N N N N 1.094 -2.458 -45.045 2.379 2.832 -0.940 H62 ZPN 43 ZPN H61 H61 H 0 1 N N N N N N 1.353 -2.562 -43.271 3.228 4.276 -1.541 H61 ZPN 44 ZPN H81 H81 H 0 1 N N N N N N 2.132 1.181 -43.884 5.261 1.625 1.065 H81 ZPN 45 ZPN H82 H82 H 0 1 N N N N N N 1.423 0.134 -42.607 3.492 1.473 0.947 H82 ZPN 46 ZPN H91 H91 H 0 1 N N N N N N 3.690 -0.534 -41.866 3.596 0.331 -1.028 H91 ZPN 47 ZPN H92 H92 H 0 1 N Y N N N N 4.426 0.445 -43.179 4.932 1.330 -1.646 H92 ZPN 48 ZPN H102 H102 H 0 0 N N N N N N 4.179 2.358 -42.021 6.437 -0.248 -1.065 H102 ZPN 49 ZPN H162 H162 H 0 0 N N N N N N 2.452 1.999 -41.685 5.848 -0.238 0.615 H162 ZPN 50 ZPN H141 H141 H 0 0 N N N N N N 4.656 0.790 -39.986 4.722 -1.852 -1.718 H141 ZPN 51 ZPN H151 H151 H 0 0 N N N N N N 5.151 3.151 -40.037 6.247 -3.349 -0.951 H151 ZPN 52 ZPN H142 H142 H 0 0 N N N N N N 3.410 3.587 -39.971 6.607 -2.352 0.481 H142 ZPN 53 ZPN H223 H223 H 0 0 N N N N N N 5.369 3.308 -36.412 6.494 -3.910 2.172 H223 ZPN 54 ZPN H222 H222 H 0 0 N N N N N N 6.100 3.850 -38.046 4.919 -4.874 2.474 H222 ZPN 55 ZPN H121 H121 H 0 0 N N N N N N 3.337 2.154 -36.334 3.690 -4.888 -0.487 H121 ZPN 56 ZPN H122 H122 H 0 0 N N N N N N 2.184 2.849 -37.523 3.077 -4.560 1.151 H122 ZPN 57 ZPN H111 H111 H 0 0 N N N N N N 3.778 0.238 -37.829 2.721 -3.022 -1.296 H111 ZPN 58 ZPN H101 H101 H 0 0 N N N N N N 0.775 0.777 -37.306 1.414 -3.163 1.463 H101 ZPN 59 ZPN H231 H231 H 0 0 N N N N N N 2.612 -2.850 -36.204 1.749 -1.807 -1.856 H231 ZPN 60 ZPN H232 H232 H 0 0 N N N N N N 3.409 -2.046 -37.598 0.072 -2.264 -2.238 H232 ZPN 61 ZPN H233 H233 H 0 0 N N N N N N 3.588 -1.364 -35.946 0.428 -0.643 -1.595 H233 ZPN 62 ZPN H181 H181 H 0 0 N N N N N N 0.948 -2.068 -35.154 -1.325 -3.043 0.502 H181 ZPN 63 ZPN H182 H182 H 0 0 N N N N N N 0.028 -0.592 -35.606 -0.648 -1.796 1.575 H182 ZPN 64 ZPN H191 H191 H 0 0 N N N N N N 0.195 -3.198 -36.987 -1.280 -0.856 -1.168 H191 ZPN 65 ZPN H201 H201 H 0 0 N N N N N N -1.043 -3.342 -34.942 -3.487 -1.666 0.777 H201 ZPN 66 ZPN H202 H202 H 0 0 N N N N N N -2.632 -4.686 -35.963 -2.851 -2.645 -1.881 H202 ZPN 67 ZPN H203 H203 H 0 0 N N N N N N -2.619 -1.340 -36.418 -3.576 -0.004 -1.666 H203 ZPN 68 ZPN "H2'1" "H2'1" H 0 0 N N N N N N -4.264 -0.260 -35.425 -5.560 1.400 -1.907 "H2'1" ZPN 69 ZPN "H3'1" "H3'1" H 0 0 N N N N N N -6.213 -0.297 -34.056 -7.821 1.840 -1.117 "H3'1" ZPN 70 ZPN "H4'1" "H4'1" H 0 0 N N N N N N -4.714 -2.444 -32.337 -7.359 -0.788 0.567 "H4'1" ZPN 71 ZPN H6 H6 H 0 1 N N N N N N -7.344 -0.937 -32.074 -9.620 1.258 0.407 H6 ZPN 72 ZPN H7 H7 H 0 1 N N N N N N -7.777 -2.225 -30.123 -9.846 -1.554 1.270 H7 ZPN 73 ZPN H8 H8 H 0 1 N N N N N N -6.851 -3.569 -30.873 -9.112 -0.638 2.609 H8 ZPN 74 ZPN H9 H9 H 0 1 N N N N N N -6.002 -2.342 -29.874 -10.721 -0.184 1.997 H9 ZPN 75 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ZPN O7 C7 DOUB N N 1 ZPN C21 C5 SING N N 2 ZPN C7 C6 SING N N 3 ZPN C7 C8 SING N N 4 ZPN C6 C5 SING N N 5 ZPN C5 C4 DOUB N Z 6 ZPN C8 C9 SING N N 7 ZPN C4 C3 SING N N 8 ZPN C9 C10 SING N N 9 ZPN C10 C11 SING N N 10 ZPN C3 C2 DOUB N E 11 ZPN C2 C1 SING N N 12 ZPN C11 C12 SING N N 13 ZPN C11 O11 SING N N 14 ZPN C12 C13 SING N N 15 ZPN O11 C15 SING N N 16 ZPN O1 C1 DOUB N N 17 ZPN C1 O19 SING N N 18 ZPN C13 C22 DOUB N N 19 ZPN C13 C14 SING N N 20 ZPN O19 C19 SING N N 21 ZPN C15 C14 SING N N 22 ZPN C15 C16 SING N N 23 ZPN C16 C17 DOUB N E 24 ZPN C17 C23 SING N N 25 ZPN C17 C18 SING N N 26 ZPN C19 C18 SING N N 27 ZPN C19 C20 SING N N 28 ZPN O20 C20 SING N N 29 ZPN C20 N20 SING N N 30 ZPN N20 "C1'" SING N N 31 ZPN "C2'" "C1'" SING N N 32 ZPN "C2'" "C3'" DOUB N Z 33 ZPN "C1'" "O1'" DOUB N N 34 ZPN "C3'" "C4'" SING N N 35 ZPN "C4'" "C5'" DOUB N E 36 ZPN "C5'" "C6'" SING N N 37 ZPN C2 H21 SING N N 38 ZPN C3 H31 SING N N 39 ZPN C4 H41 SING N N 40 ZPN C21 H211 SING N N 41 ZPN C21 H212 SING N N 42 ZPN C21 H213 SING N N 43 ZPN C6 H62 SING N N 44 ZPN C6 H61 SING N N 45 ZPN C8 H81 SING N N 46 ZPN C8 H82 SING N N 47 ZPN C9 H91 SING N N 48 ZPN C9 H92 SING N N 49 ZPN C10 H102 SING N N 50 ZPN C10 H162 SING N N 51 ZPN C11 H141 SING N N 52 ZPN C12 H151 SING N N 53 ZPN C12 H142 SING N N 54 ZPN C22 H223 SING N N 55 ZPN C22 H222 SING N N 56 ZPN C14 H121 SING N N 57 ZPN C14 H122 SING N N 58 ZPN C15 H111 SING N N 59 ZPN C16 H101 SING N N 60 ZPN C23 H231 SING N N 61 ZPN C23 H232 SING N N 62 ZPN C23 H233 SING N N 63 ZPN C18 H181 SING N N 64 ZPN C18 H182 SING N N 65 ZPN C19 H191 SING N N 66 ZPN C20 H201 SING N N 67 ZPN O20 H202 SING N N 68 ZPN N20 H203 SING N N 69 ZPN "C2'" "H2'1" SING N N 70 ZPN "C3'" "H3'1" SING N N 71 ZPN "C4'" "H4'1" SING N N 72 ZPN "C5'" H6 SING N N 73 ZPN "C6'" H7 SING N N 74 ZPN "C6'" H8 SING N N 75 ZPN "C6'" H9 SING N N 76 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ZPN SMILES ACDLabs 12.01 "O=C(/C=C\C=C\C)NC(O)C1OC(=O)C=CC=C(CC(=O)CCCC2OC(C=C(C)C1)CC(=C)/C2)C" ZPN InChI InChI 1.03 "InChI=1S/C29H39NO6/c1-5-6-7-13-27(32)30-29(34)26-19-22(4)18-25-17-21(3)16-24(35-25)12-9-11-23(31)15-20(2)10-8-14-28(33)36-26/h5-8,10,13-14,18,24-26,29,34H,3,9,11-12,15-17,19H2,1-2,4H3,(H,30,32)/b6-5+,13-7-,14-8+,20-10-,22-18+/t24-,25-,26-,29-/m0/s1" ZPN InChIKey InChI 1.03 KNEMNZWQWFRUIB-KZVIXHMTSA-N ZPN SMILES_CANONICAL CACTVS 3.370 "C\C=C\C=C/C(=O)N[C@@H](O)[C@@H]1CC(=C/[C@@H]2CC(=C)C[C@H](CCCC(=O)CC(=C\C=C\C(=O)O1)/C)O2)/C" ZPN SMILES CACTVS 3.370 "CC=CC=CC(=O)N[CH](O)[CH]1CC(=C[CH]2CC(=C)C[CH](CCCC(=O)CC(=CC=CC(=O)O1)C)O2)C" ZPN SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C/C=C/C=C\C(=O)N[C@H]([C@@H]1C/C(=C/[C@@H]2CC(=C)C[C@@H](O2)CCCC(=O)C/C(=C\C=C\C(=O)O1)/C)/C)O" ZPN SMILES "OpenEye OEToolkits" 1.7.6 "CC=CC=CC(=O)NC(C1CC(=CC2CC(=C)CC(O2)CCCC(=O)CC(=CC=CC(=O)O1)C)C)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ZPN "SYSTEMATIC NAME" ACDLabs 12.01 "(2Z,4E)-N-[(S)-[(1S,2E,5S,8E,10Z,17S)-3,11-dimethyl-19-methylidene-7,13-dioxo-6,21-dioxabicyclo[15.3.1]henicosa-2,8,10-trien-5-yl](hydroxy)methyl]hexa-2,4-dienamide" ZPN "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2Z,4E)-N-[(S)-[(1S,7Z,9E,13S,15E,17S)-7,15-dimethyl-19-methylidene-5,11-bis(oxidanylidene)-12,21-dioxabicyclo[15.3.1]henicosa-7,9,15-trien-13-yl]-oxidanyl-methyl]hexa-2,4-dienamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site ZPN "Create component" 2012-12-20 RCSB ZPN "Other modification" 2013-01-17 RCSB ZPN "Initial release" 2013-01-18 RCSB ZPN "Modify synonyms" 2021-03-01 PDBE ZPN "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id ZPN _pdbx_chem_comp_synonyms.name "(-)-ZAMPANOLIDE (Bound form)" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id ZPN _pdbx_chem_comp_pcm.modified_residue_id HIS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category Lipid/lipid-like _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C9 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom NE2 _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #