data_ZRN # _chem_comp.id ZRN _chem_comp.name "(2R,3S)-3-[(2S)-2-amino-4,4-diethyl-6-oxo-1,3-diazinan-1-yl]-N-[(1R,2R)-2-hydroxy-2,3-dihydro-1H-inden-1-yl]-2-(methoxymethyl)-2-methyl-2,3-dihydro-1-benzofuran-5-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C29 H36 N4 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-03-24 _chem_comp.pdbx_modified_date 2025-02-21 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 520.620 _chem_comp.one_letter_code ? _chem_comp.three_letter_code ZRN _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8GM0 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal ZRN C1 C1 C 0 1 Y N N N N N 20.891 33.010 0.933 -0.871 2.562 0.493 C1 ZRN 1 ZRN C2 C2 C 0 1 N N N N N N 20.280 27.146 -3.944 -6.038 -2.914 -1.520 C2 ZRN 2 ZRN C3 C3 C 0 1 N N N N N N 27.176 27.325 2.586 7.072 -0.205 -1.561 C3 ZRN 3 ZRN C5 C4 C 0 1 N N R N N N 18.715 32.311 1.398 -3.097 2.237 0.877 C5 ZRN 4 ZRN C6 C5 C 0 1 N N N N N N 20.193 28.089 -1.550 -3.769 -2.678 -0.502 C6 ZRN 5 ZRN C7 C6 C 0 1 N N N N N N 19.607 29.417 -2.066 -3.382 -1.545 -1.458 C7 ZRN 6 ZRN C8 C7 C 0 1 N N N N N N 19.539 30.499 -1.025 -2.752 -0.415 -0.694 C8 ZRN 7 ZRN C10 C8 C 0 1 N N N N N N 19.225 28.774 0.650 -3.713 -1.116 1.360 C10 ZRN 8 ZRN C21 C9 C 0 1 Y N N N N N 21.982 33.816 0.647 0.320 3.078 -0.020 C21 ZRN 9 ZRN C22 C10 C 0 1 N N N N N N 18.294 32.700 2.802 -4.117 2.634 1.946 C22 ZRN 10 ZRN C24 C11 C 0 1 N N N N N N 24.762 31.261 1.052 2.458 -0.001 -0.216 C24 ZRN 11 ZRN C26 C12 C 0 1 N N R N N N 26.324 28.499 3.083 5.668 0.226 -2.037 C26 ZRN 12 ZRN C28 C13 C 0 1 N N R N N N 26.149 29.402 1.834 4.751 -0.374 -0.950 C28 ZRN 13 ZRN C29 C14 C 0 1 Y N N N N N 26.239 28.413 0.695 5.614 -0.468 0.290 C29 ZRN 14 ZRN C30 C15 C 0 1 Y N N N N N 25.809 28.546 -0.622 5.261 -0.626 1.619 C30 ZRN 15 ZRN C31 C16 C 0 1 Y N N N N N 25.971 27.488 -1.503 6.237 -0.686 2.595 C31 ZRN 16 ZRN C32 C17 C 0 1 Y N N N N N 26.557 26.309 -1.076 7.570 -0.589 2.244 C32 ZRN 17 ZRN C13 C18 C 0 1 N N S N N N 19.654 31.070 1.360 -2.360 0.937 1.279 C13 ZRN 18 ZRN C14 C19 C 0 1 N N N N N N 21.715 28.080 -1.384 -2.513 -3.433 -0.061 C14 ZRN 19 ZRN C15 C20 C 0 1 N N N N N N 19.818 26.949 -2.507 -4.730 -3.641 -1.202 C15 ZRN 20 ZRN C16 C21 C 0 1 N N N N N N 22.228 26.892 -0.558 -2.885 -4.457 1.014 C16 ZRN 21 ZRN C17 C22 C 0 1 Y N N N N N 21.030 31.683 1.262 -0.958 1.199 0.761 C17 ZRN 22 ZRN C18 C23 C 0 1 Y N N N N N 22.293 31.117 1.324 0.110 0.366 0.538 C18 ZRN 23 ZRN C19 C24 C 0 1 Y N N N N N 23.410 31.898 1.039 1.303 0.886 0.027 C19 ZRN 24 ZRN C20 C25 C 0 1 Y N N N N N 23.245 33.245 0.705 1.394 2.253 -0.252 C20 ZRN 25 ZRN C33 C26 C 0 1 Y N N N N N 26.984 26.178 0.237 7.924 -0.432 0.919 C33 ZRN 26 ZRN C34 C27 C 0 1 Y N N N N N 26.823 27.236 1.127 6.948 -0.371 -0.061 C34 ZRN 27 ZRN C35 C28 C 0 1 N N N N N N 17.486 32.216 0.496 -3.776 2.075 -0.484 C35 ZRN 28 ZRN C36 C29 C 0 1 N N N N N N 15.418 31.801 1.541 -5.198 3.210 -2.046 C36 ZRN 29 ZRN N11 N1 N 0 1 N N N N N N 18.589 28.364 1.687 -3.753 -1.047 2.659 N11 ZRN 30 ZRN N27 N2 N 0 1 N N N N N N 24.910 30.166 1.810 3.605 0.506 -0.709 N27 ZRN 31 ZRN N4 N3 N 0 1 N N N N N N 19.688 27.837 -0.197 -4.430 -2.081 0.672 N4 ZRN 32 ZRN N9 N4 N 0 1 N N N N N N 19.417 30.093 0.295 -2.954 -0.228 0.618 N9 ZRN 33 ZRN O12 O1 O 0 1 N N N N N N 19.620 31.677 -1.326 -2.033 0.359 -1.288 O12 ZRN 34 ZRN O23 O2 O 0 1 N N N N N N 19.575 33.409 0.874 -2.031 3.199 0.807 O23 ZRN 35 ZRN O25 O3 O 0 1 N N N N N N 25.675 31.717 0.372 2.374 -1.189 0.028 O25 ZRN 36 ZRN O37 O4 O 0 1 N N N N N N 16.371 32.795 1.146 -4.520 3.257 -0.788 O37 ZRN 37 ZRN O38 O5 O 0 1 N N N N N N 26.988 29.186 4.145 5.372 -0.333 -3.318 O38 ZRN 38 ZRN H2C H1 H 0 1 N N N N N N 19.968 26.284 -4.552 -5.830 -2.048 -2.149 H2C ZRN 39 ZRN H2A H2 H 0 1 N N N N N N 19.830 28.064 -4.351 -6.712 -3.591 -2.046 H2A ZRN 40 ZRN H2B H3 H 0 1 N N N N N N 21.376 27.233 -3.968 -6.506 -2.585 -0.592 H2B ZRN 41 ZRN H3A H4 H 0 1 N N N N N N 26.913 26.396 3.113 7.354 -1.150 -2.024 H3A ZRN 42 ZRN H3B H5 H 0 1 N N N N N N 28.248 27.531 2.720 7.805 0.566 -1.798 H3B ZRN 43 ZRN H7A H6 H 0 1 N N N N N N 20.235 29.774 -2.895 -2.674 -1.921 -2.196 H7A ZRN 44 ZRN H7B H7 H 0 1 N N N N N N 18.588 29.226 -2.434 -4.275 -1.183 -1.968 H7B ZRN 45 ZRN H21 H9 H 0 1 N N N N N N 21.853 34.856 0.387 0.397 4.133 -0.238 H21 ZRN 46 ZRN H22A H10 H 0 0 N N N N N N 19.183 32.767 3.447 -3.621 2.702 2.914 H22A ZRN 47 ZRN H22B H11 H 0 0 N N N N N N 17.786 33.675 2.775 -4.551 3.601 1.692 H22B ZRN 48 ZRN H22C H12 H 0 0 N N N N N N 17.607 31.940 3.203 -4.905 1.882 1.993 H22C ZRN 49 ZRN H26 H13 H 0 1 N N N N N N 25.340 28.129 3.406 5.584 1.313 -2.062 H26 ZRN 50 ZRN H28 H14 H 0 1 N N N N N N 27.007 30.088 1.779 4.409 -1.365 -1.249 H28 ZRN 51 ZRN H30 H15 H 0 1 N N N N N N 25.353 29.466 -0.955 4.219 -0.701 1.894 H30 ZRN 52 ZRN H31 H16 H 0 1 N N N N N N 25.639 27.584 -2.526 5.958 -0.809 3.631 H31 ZRN 53 ZRN H32 H17 H 0 1 N N N N N N 26.682 25.489 -1.767 8.334 -0.636 3.006 H32 ZRN 54 ZRN H13 H18 H 0 1 N N N N N N 19.573 30.561 2.332 -2.357 0.810 2.362 H13 ZRN 55 ZRN H14B H19 H 0 0 N N N N N N 22.175 28.036 -2.382 -2.078 -3.947 -0.918 H14B ZRN 56 ZRN H14A H20 H 0 0 N N N N N N 22.017 29.011 -0.882 -1.789 -2.726 0.346 H14A ZRN 57 ZRN H15A H21 H 0 0 N N N N N N 18.722 26.851 -2.510 -4.935 -4.489 -0.549 H15A ZRN 58 ZRN H15B H22 H 0 0 N N N N N N 20.268 26.020 -2.127 -4.278 -3.996 -2.128 H15B ZRN 59 ZRN H16B H23 H 0 0 N N N N N N 23.324 26.946 -0.478 -3.402 -3.955 1.831 H16B ZRN 60 ZRN H16C H24 H 0 0 N N N N N N 21.785 26.927 0.448 -3.538 -5.215 0.582 H16C ZRN 61 ZRN H16A H25 H 0 0 N N N N N N 21.943 25.952 -1.052 -1.979 -4.930 1.393 H16A ZRN 62 ZRN H18 H26 H 0 1 N N N N N N 22.410 30.077 1.592 0.030 -0.688 0.756 H18 ZRN 63 ZRN H20 H27 H 0 1 N N N N N N 24.113 33.850 0.489 2.311 2.661 -0.650 H20 ZRN 64 ZRN H33 H28 H 0 1 N N N N N N 27.440 25.257 0.568 8.967 -0.356 0.645 H33 ZRN 65 ZRN H35B H29 H 0 0 N N N N N N 17.274 31.159 0.278 -3.019 1.915 -1.252 H35B ZRN 66 ZRN H35A H30 H 0 0 N N N N N N 17.680 32.753 -0.444 -4.450 1.219 -0.455 H35A ZRN 67 ZRN H36B H31 H 0 0 N N N N N N 14.567 32.286 2.042 -4.470 3.073 -2.846 H36B ZRN 68 ZRN H36C H32 H 0 0 N N N N N N 15.061 31.262 0.651 -5.901 2.377 -2.049 H36C ZRN 69 ZRN H36A H33 H 0 0 N N N N N N 15.894 31.091 2.233 -5.739 4.143 -2.202 H36A ZRN 70 ZRN H2 H34 H 0 1 N N N N N N 18.233 29.123 2.233 -3.320 -0.310 3.119 H2 ZRN 71 ZRN H27 H37 H 0 1 N N N N N N 24.144 29.864 2.378 3.672 1.454 -0.904 H27 ZRN 72 ZRN H4 H38 H 0 1 N N N N N N 19.688 26.890 0.123 -5.320 -2.349 0.948 H4 ZRN 73 ZRN H38 H40 H 0 1 N N N N N N 27.078 28.605 4.891 5.976 -0.053 -4.019 H38 ZRN 74 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ZRN C2 C15 SING N N 1 ZRN C15 C6 SING N N 2 ZRN C7 C6 SING N N 3 ZRN C7 C8 SING N N 4 ZRN C6 C14 SING N N 5 ZRN C6 N4 SING N N 6 ZRN C31 C32 DOUB Y N 7 ZRN C31 C30 SING Y N 8 ZRN C14 C16 SING N N 9 ZRN O12 C8 DOUB N N 10 ZRN C32 C33 SING Y N 11 ZRN C8 N9 SING N N 12 ZRN C30 C29 DOUB Y N 13 ZRN N4 C10 SING N N 14 ZRN C33 C34 DOUB Y N 15 ZRN N9 C10 SING N N 16 ZRN N9 C13 SING N N 17 ZRN O25 C24 DOUB N N 18 ZRN C35 O37 SING N N 19 ZRN C35 C5 SING N N 20 ZRN C21 C20 DOUB Y N 21 ZRN C21 C1 SING Y N 22 ZRN C10 N11 DOUB N N 23 ZRN C29 C34 SING Y N 24 ZRN C29 C28 SING N N 25 ZRN C20 C19 SING Y N 26 ZRN O23 C1 SING N N 27 ZRN O23 C5 SING N N 28 ZRN C1 C17 DOUB Y N 29 ZRN C19 C24 SING N N 30 ZRN C19 C18 DOUB Y N 31 ZRN C24 N27 SING N N 32 ZRN C34 C3 SING N N 33 ZRN O37 C36 SING N N 34 ZRN C17 C18 SING Y N 35 ZRN C17 C13 SING N N 36 ZRN C13 C5 SING N N 37 ZRN C5 C22 SING N N 38 ZRN N27 C28 SING N N 39 ZRN C28 C26 SING N N 40 ZRN C3 C26 SING N N 41 ZRN C26 O38 SING N N 42 ZRN C2 H2C SING N N 43 ZRN C2 H2A SING N N 44 ZRN C2 H2B SING N N 45 ZRN C3 H3A SING N N 46 ZRN C3 H3B SING N N 47 ZRN C7 H7A SING N N 48 ZRN C7 H7B SING N N 49 ZRN C21 H21 SING N N 50 ZRN C22 H22A SING N N 51 ZRN C22 H22B SING N N 52 ZRN C22 H22C SING N N 53 ZRN C26 H26 SING N N 54 ZRN C28 H28 SING N N 55 ZRN C30 H30 SING N N 56 ZRN C31 H31 SING N N 57 ZRN C32 H32 SING N N 58 ZRN C13 H13 SING N N 59 ZRN C14 H14B SING N N 60 ZRN C14 H14A SING N N 61 ZRN C15 H15A SING N N 62 ZRN C15 H15B SING N N 63 ZRN C16 H16B SING N N 64 ZRN C16 H16C SING N N 65 ZRN C16 H16A SING N N 66 ZRN C18 H18 SING N N 67 ZRN C20 H20 SING N N 68 ZRN C33 H33 SING N N 69 ZRN C35 H35B SING N N 70 ZRN C35 H35A SING N N 71 ZRN C36 H36B SING N N 72 ZRN C36 H36C SING N N 73 ZRN C36 H36A SING N N 74 ZRN N11 H2 SING N N 75 ZRN N27 H27 SING N N 76 ZRN N4 H4 SING N N 77 ZRN O38 H38 SING N N 78 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ZRN SMILES ACDLabs 12.01 "OC1Cc2ccccc2C1NC(=O)c1cc2c(cc1)OC(C)(COC)C2N1C(=N)NC(CC)(CC)CC1=O" ZRN InChI InChI 1.06 "InChI=1S/C29H36N4O5/c1-5-29(6-2)15-23(35)33(27(30)32-29)25-20-13-18(11-12-22(20)38-28(25,3)16-37-4)26(36)31-24-19-10-8-7-9-17(19)14-21(24)34/h7-13,21,24-25,34H,5-6,14-16H2,1-4H3,(H2,30,32)(H,31,36)/t21-,24-,25+,28+/m1/s1" ZRN InChIKey InChI 1.06 LREJHMJDUFIXDP-IWNAYQHTSA-N ZRN SMILES_CANONICAL CACTVS 3.385 "CCC1(CC)CC(=O)N([C@H]2c3cc(ccc3O[C@@]2(C)COC)C(=O)N[C@H]4[C@H](O)Cc5ccccc45)C(=N)N1" ZRN SMILES CACTVS 3.385 "CCC1(CC)CC(=O)N([CH]2c3cc(ccc3O[C]2(C)COC)C(=O)N[CH]4[CH](O)Cc5ccccc45)C(=N)N1" ZRN SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[H]/N=C\1/NC(CC(=O)N1[C@H]2c3cc(ccc3O[C@@]2(C)COC)C(=O)N[C@@H]4c5ccccc5C[C@H]4O)(CC)CC" ZRN SMILES "OpenEye OEToolkits" 2.0.7 "CCC1(CC(=O)N(C(=N)N1)C2c3cc(ccc3OC2(C)COC)C(=O)NC4c5ccccc5CC4O)CC" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ZRN "SYSTEMATIC NAME" ACDLabs 12.01 "(2R,3S)-3-[(2Z)-4,4-diethyl-2-imino-6-oxo-1,3-diazinan-1-yl]-N-[(1R,2R)-2-hydroxy-2,3-dihydro-1H-inden-1-yl]-2-(methoxymethyl)-2-methyl-2,3-dihydro-1-benzofuran-5-carboxamide" ZRN "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{R},3~{S})-3-(2-azanylidene-4,4-diethyl-6-oxidanylidene-1,3-diazinan-1-yl)-2-(methoxymethyl)-2-methyl-~{N}-[(1~{R},2~{R})-2-oxidanyl-2,3-dihydro-1~{H}-inden-1-yl]-3~{H}-1-benzofuran-5-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site ZRN "Create component" 2023-03-24 RCSB ZRN "Modify descriptor" 2023-04-05 RCSB ZRN "Initial release" 2025-02-26 RCSB #