data_ZTO # _chem_comp.id ZTO _chem_comp.name "N-(3-{[(3R)-5-fluoro-2-oxo-2,3-dihydro-1H-indol-3-yl]methyl}phenyl)-4-methoxybenzamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C23 H19 F N2 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-03-31 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 390.407 _chem_comp.one_letter_code ? _chem_comp.three_letter_code ZTO _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8FTQ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal ZTO O1 O1 O 0 1 N N N N N N 21.821 -9.786 39.975 1.479 1.161 -1.223 O1 ZTO 1 ZTO C8 C1 C 0 1 N N N N N N 21.765 -10.204 38.809 2.633 1.090 -0.856 C8 ZTO 2 ZTO N1 N1 N 0 1 N N N N N N 20.848 -11.070 38.426 3.467 2.121 -0.641 N1 ZTO 3 ZTO C4 C2 C 0 1 Y N N N N N 21.019 -11.329 37.137 4.732 1.700 -0.224 C4 ZTO 4 ZTO C5 C3 C 0 1 Y N N N N N 20.294 -12.133 36.379 5.873 2.430 0.102 C5 ZTO 5 ZTO C6 C4 C 0 1 Y N N N N N 20.579 -12.314 35.049 7.024 1.779 0.495 C6 ZTO 6 ZTO C1 C5 C 0 1 Y N N N N N 21.646 -11.635 34.523 7.055 0.397 0.568 C1 ZTO 7 ZTO F1 F1 F 0 1 N N N N N N 21.920 -11.826 33.172 8.185 -0.236 0.953 F1 ZTO 8 ZTO C2 C6 C 0 1 Y N N N N N 22.382 -10.781 35.352 5.923 -0.336 0.245 C2 ZTO 9 ZTO C3 C7 C 0 1 Y N N N N N 22.057 -10.626 36.650 4.774 0.314 -0.146 C3 ZTO 10 ZTO C7 C8 C 0 1 N N R N N N 22.649 -9.910 37.736 3.403 -0.177 -0.548 C7 ZTO 11 ZTO C9 C9 C 0 1 N N N N N N 22.847 -8.386 37.528 2.747 -0.938 0.606 C9 ZTO 12 ZTO C10 C10 C 0 1 Y N N N N N 24.046 -7.939 36.930 1.436 -1.521 0.142 C10 ZTO 13 ZTO C15 C11 C 0 1 Y N N N N N 24.082 -7.684 35.548 0.273 -0.787 0.263 C15 ZTO 14 ZTO C11 C12 C 0 1 Y N N N N N 25.164 -7.702 37.723 1.401 -2.789 -0.409 C11 ZTO 15 ZTO C12 C13 C 0 1 Y N N N N N 26.328 -7.251 37.114 0.201 -3.328 -0.835 C12 ZTO 16 ZTO C13 C14 C 0 1 Y N N N N N 26.359 -7.024 35.732 -0.966 -2.601 -0.713 C13 ZTO 17 ZTO C14 C15 C 0 1 Y N N N N N 25.236 -7.224 34.926 -0.934 -1.325 -0.165 C14 ZTO 18 ZTO N2 N2 N 0 1 N N N N N N 25.329 -7.010 33.588 -2.113 -0.584 -0.044 N2 ZTO 19 ZTO C16 C16 C 0 1 N N N N N N 24.455 -6.200 32.929 -3.281 -1.210 0.202 C16 ZTO 20 ZTO O2 O2 O 0 1 N N N N N N 23.545 -5.553 33.470 -3.295 -2.408 0.414 O2 ZTO 21 ZTO C17 C17 C 0 1 Y N N N N N 24.697 -6.004 31.556 -4.542 -0.444 0.214 C17 ZTO 22 ZTO C18 C18 C 0 1 Y N N N N N 23.635 -5.986 30.654 -5.753 -1.092 0.468 C18 ZTO 23 ZTO C19 C19 C 0 1 Y N N N N N 23.818 -5.750 29.296 -6.928 -0.373 0.478 C19 ZTO 24 ZTO C20 C20 C 0 1 Y N N N N N 25.083 -5.504 28.783 -6.909 0.996 0.235 C20 ZTO 25 ZTO O3 O3 O 0 1 N N N N N N 25.200 -5.274 27.433 -8.069 1.701 0.246 O3 ZTO 26 ZTO C23 C21 C 0 1 N N N N N N 26.464 -5.676 26.870 -7.978 3.103 -0.011 C23 ZTO 27 ZTO C21 C22 C 0 1 Y N N N N N 26.168 -5.509 29.677 -5.706 1.644 -0.018 C21 ZTO 28 ZTO C22 C23 C 0 1 Y N N N N N 25.980 -5.750 31.046 -4.527 0.933 -0.024 C22 ZTO 29 ZTO H1 H1 H 0 1 N N N N N N 20.140 -11.466 39.011 3.220 3.051 -0.763 H1 ZTO 30 ZTO H2 H2 H 0 1 N N N N N N 19.458 -12.659 36.816 5.856 3.509 0.046 H2 ZTO 31 ZTO H3 H3 H 0 1 N N N N N N 19.981 -12.972 34.436 7.905 2.350 0.746 H3 ZTO 32 ZTO H4 H4 H 0 1 N N N N N N 23.223 -10.238 34.945 5.943 -1.414 0.301 H4 ZTO 33 ZTO H5 H5 H 0 1 N N N N N N 23.636 -10.344 37.954 3.468 -0.808 -1.435 H5 ZTO 34 ZTO H6 H6 H 0 1 N Y N N N N 22.781 -7.912 38.518 3.406 -1.742 0.933 H6 ZTO 35 ZTO H7 H7 H 0 1 N N N N N N 22.018 -8.034 36.897 2.567 -0.255 1.436 H7 ZTO 36 ZTO H8 H8 H 0 1 N N N N N N 23.193 -7.849 34.957 0.302 0.205 0.689 H8 ZTO 37 ZTO H9 H9 H 0 1 N N N N N N 25.128 -7.865 38.790 2.313 -3.360 -0.506 H9 ZTO 38 ZTO H10 H10 H 0 1 N N N N N N 27.212 -7.075 37.708 0.177 -4.318 -1.265 H10 ZTO 39 ZTO H11 H11 H 0 1 N N N N N N 27.278 -6.685 35.277 -1.903 -3.022 -1.046 H11 ZTO 40 ZTO H12 H12 H 0 1 N N N N N N 26.059 -7.459 33.073 -2.091 0.382 -0.137 H12 ZTO 41 ZTO H13 H13 H 0 1 N N N N N N 22.635 -6.161 31.022 -5.769 -2.155 0.657 H13 ZTO 42 ZTO H14 H14 H 0 1 N N N N N N 22.965 -5.758 28.633 -7.865 -0.873 0.675 H14 ZTO 43 ZTO H15 H15 H 0 1 N N N N N N 26.472 -5.457 25.792 -8.973 3.545 0.027 H15 ZTO 44 ZTO H16 H16 H 0 1 N N N N N N 27.277 -5.122 27.362 -7.344 3.571 0.742 H16 ZTO 45 ZTO H17 H17 H 0 1 N N N N N N 26.608 -6.755 27.026 -7.546 3.264 -0.999 H17 ZTO 46 ZTO H18 H18 H 0 1 N N N N N N 27.164 -5.324 29.303 -5.696 2.707 -0.207 H18 ZTO 47 ZTO H19 H19 H 0 1 N N N N N N 26.829 -5.740 31.713 -3.592 1.438 -0.221 H19 ZTO 48 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ZTO C23 O3 SING N N 1 ZTO O3 C20 SING N N 2 ZTO C20 C19 DOUB Y N 3 ZTO C20 C21 SING Y N 4 ZTO C19 C18 SING Y N 5 ZTO C21 C22 DOUB Y N 6 ZTO C18 C17 DOUB Y N 7 ZTO C22 C17 SING Y N 8 ZTO C17 C16 SING N N 9 ZTO C16 O2 DOUB N N 10 ZTO C16 N2 SING N N 11 ZTO F1 C1 SING N N 12 ZTO N2 C14 SING N N 13 ZTO C1 C6 DOUB Y N 14 ZTO C1 C2 SING Y N 15 ZTO C14 C15 DOUB Y N 16 ZTO C14 C13 SING Y N 17 ZTO C6 C5 SING Y N 18 ZTO C2 C3 DOUB Y N 19 ZTO C15 C10 SING Y N 20 ZTO C13 C12 DOUB Y N 21 ZTO C5 C4 DOUB Y N 22 ZTO C3 C4 SING Y N 23 ZTO C3 C7 SING N N 24 ZTO C10 C9 SING N N 25 ZTO C10 C11 DOUB Y N 26 ZTO C12 C11 SING Y N 27 ZTO C4 N1 SING N N 28 ZTO C9 C7 SING N N 29 ZTO C7 C8 SING N N 30 ZTO N1 C8 SING N N 31 ZTO C8 O1 DOUB N N 32 ZTO N1 H1 SING N N 33 ZTO C5 H2 SING N N 34 ZTO C6 H3 SING N N 35 ZTO C2 H4 SING N N 36 ZTO C7 H5 SING N N 37 ZTO C9 H6 SING N N 38 ZTO C9 H7 SING N N 39 ZTO C15 H8 SING N N 40 ZTO C11 H9 SING N N 41 ZTO C12 H10 SING N N 42 ZTO C13 H11 SING N N 43 ZTO N2 H12 SING N N 44 ZTO C18 H13 SING N N 45 ZTO C19 H14 SING N N 46 ZTO C23 H15 SING N N 47 ZTO C23 H16 SING N N 48 ZTO C23 H17 SING N N 49 ZTO C21 H18 SING N N 50 ZTO C22 H19 SING N N 51 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ZTO SMILES ACDLabs 12.01 "COc1ccc(cc1)C(=O)Nc1cccc(c1)CC1c2cc(F)ccc2NC1=O" ZTO InChI InChI 1.06 "InChI=1S/C23H19FN2O3/c1-29-18-8-5-15(6-9-18)22(27)25-17-4-2-3-14(11-17)12-20-19-13-16(24)7-10-21(19)26-23(20)28/h2-11,13,20H,12H2,1H3,(H,25,27)(H,26,28)/t20-/m1/s1" ZTO InChIKey InChI 1.06 PMXAOPMAOYNZJP-HXUWFJFHSA-N ZTO SMILES_CANONICAL CACTVS 3.385 "COc1ccc(cc1)C(=O)Nc2cccc(C[C@H]3C(=O)Nc4ccc(F)cc34)c2" ZTO SMILES CACTVS 3.385 "COc1ccc(cc1)C(=O)Nc2cccc(C[CH]3C(=O)Nc4ccc(F)cc34)c2" ZTO SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "COc1ccc(cc1)C(=O)Nc2cccc(c2)C[C@@H]3c4cc(ccc4NC3=O)F" ZTO SMILES "OpenEye OEToolkits" 2.0.7 "COc1ccc(cc1)C(=O)Nc2cccc(c2)CC3c4cc(ccc4NC3=O)F" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ZTO "SYSTEMATIC NAME" ACDLabs 12.01 "N-(3-{[(3R)-5-fluoro-2-oxo-2,3-dihydro-1H-indol-3-yl]methyl}phenyl)-4-methoxybenzamide" ZTO "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}-[3-[[(3~{R})-5-fluoranyl-2-oxidanylidene-1,3-dihydroindol-3-yl]methyl]phenyl]-4-methoxy-benzamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site ZTO "Create component" 2023-03-31 RCSB ZTO "Initial release" 2024-03-27 RCSB ZTO "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id ZTO _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C9 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #