data_ZUD # _chem_comp.id ZUD _chem_comp.name Udenafil _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H36 N6 O4 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "(3P)-3-(1-methyl-7-oxo-3-propyl-4,7-dihydro-1H-pyrazolo[4,3-d]pyrimidin-5-yl)-N-{2-[(2R)-1-methylpyrrolidin-2-yl]ethyl}-4-propoxybenzene-1-sulfonamide" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-10-06 _chem_comp.pdbx_modified_date 2024-01-12 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 516.656 _chem_comp.one_letter_code ? _chem_comp.three_letter_code ZUD _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8UGB _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal ZUD N1 N1 N 0 1 Y N N N N N 176.368 193.455 198.358 -3.090 -4.259 -0.703 N1 ZUD 1 ZUD C2 C1 C 0 1 N N N N N N 175.759 193.391 195.345 0.201 -4.555 -0.826 C2 ZUD 2 ZUD N3 N2 N 0 1 N N N N N N 179.502 194.836 197.406 -1.495 -1.071 -0.799 N3 ZUD 3 ZUD C4 C2 C 0 1 Y N N N N N 177.233 193.586 197.385 -2.054 -3.555 -1.081 C4 ZUD 4 ZUD C5 C3 C 0 1 Y N N N N N 177.996 194.647 199.220 -3.469 -2.164 -0.022 C5 ZUD 5 ZUD C6 C4 C 0 1 Y N N N N N 178.336 194.370 197.900 -2.241 -2.228 -0.677 C6 ZUD 6 ZUD O2 O1 O 0 1 N N N N N N 181.327 198.696 194.007 2.356 1.168 -2.917 O2 ZUD 7 ZUD O4 O2 O 0 1 N N N N N N 182.795 194.959 199.383 -2.768 2.615 0.722 O4 ZUD 8 ZUD C1 C5 C 0 1 N N N N N N 174.672 192.359 195.639 1.416 -5.094 -1.583 C1 ZUD 9 ZUD C10 C6 C 0 1 Y N N N N N 182.829 195.768 198.241 -1.576 2.540 0.078 C10 ZUD 10 ZUD C11 C7 C 0 1 Y N N N N N 184.030 196.247 197.748 -0.792 3.673 -0.070 C11 ZUD 11 ZUD C12 C8 C 0 1 Y N N N N N 184.043 197.035 196.610 0.424 3.594 -0.722 C12 ZUD 12 ZUD C13 C9 C 0 1 Y N N N N N 182.860 197.350 195.965 0.867 2.386 -1.232 C13 ZUD 13 ZUD C14 C10 C 0 1 Y N N N N N 181.660 196.869 196.460 0.100 1.249 -1.095 C14 ZUD 14 ZUD C15 C11 C 0 1 N N N N N N 182.763 196.577 192.646 3.541 0.678 -0.213 C15 ZUD 15 ZUD C16 C12 C 0 1 N N N N N N 182.526 196.839 191.161 4.881 0.455 0.492 C16 ZUD 16 ZUD C17 C13 C 0 1 N N R N N N 183.785 196.471 190.280 4.905 -0.944 1.110 C17 ZUD 17 ZUD C18 C14 C 0 1 N N N N N N 183.464 196.493 189.054 6.295 -1.228 1.711 C18 ZUD 18 ZUD C19 C15 C 0 1 N N N N N N 183.693 197.898 188.646 6.038 -1.501 3.210 C19 ZUD 19 ZUD C20 C16 C 0 1 N N N N N N 184.904 198.328 189.487 4.545 -1.912 3.237 C20 ZUD 20 ZUD C21 C17 C 0 1 N N N N N N 185.981 197.059 190.559 2.646 -1.565 1.753 C21 ZUD 21 ZUD C22 C18 C 0 1 N N N N N N 183.559 195.396 200.469 -3.153 3.895 1.226 C22 ZUD 22 ZUD C23 C19 C 0 1 N N N N N N 183.056 194.651 201.703 -4.514 3.783 1.916 C23 ZUD 23 ZUD C24 C20 C 0 1 N N N N N N 182.152 195.523 202.576 -4.927 5.155 2.455 C24 ZUD 24 ZUD C25 C21 C 0 1 N N N N N N 176.065 194.113 200.705 -5.282 -3.826 0.538 C25 ZUD 25 ZUD C3 C22 C 0 1 N N N N N N 177.097 193.019 195.977 -0.857 -4.086 -1.827 C3 ZUD 26 ZUD C7 C23 C 0 1 N N N N N N 180.330 195.550 198.159 -1.957 0.102 -0.287 C7 ZUD 27 ZUD C8 C24 C 0 1 N N N N N N 178.906 195.413 199.988 -3.908 -0.871 0.505 C8 ZUD 28 ZUD C9 C25 C 0 1 Y N N N N N 181.647 196.077 197.595 -1.131 1.315 -0.438 C9 ZUD 29 ZUD N2 N3 N 0 1 Y N N N N N 176.796 194.072 199.452 -3.997 -3.422 -0.038 N2 ZUD 30 ZUD N4 N4 N 0 1 N N N N N N 180.033 195.835 199.429 -3.112 0.197 0.337 N4 ZUD 31 ZUD N5 N5 N 0 1 N N N N N N 183.668 197.566 193.204 3.569 1.961 -0.919 N5 ZUD 32 ZUD N6 N6 N 0 1 N N N N N N 184.926 197.579 190.474 3.930 -1.023 2.219 N6 ZUD 33 ZUD O1 O3 O 0 1 N N N N N N 178.640 195.737 201.323 -4.976 -0.766 1.086 O1 ZUD 34 ZUD O3 O4 O 0 1 N N N N N N 183.670 199.800 194.776 2.696 3.614 -2.530 O3 ZUD 35 ZUD S1 S1 S 0 1 N N N N N N 182.877 198.385 194.473 2.420 2.301 -2.062 S1 ZUD 36 ZUD H23 H1 H 0 1 N N N N N N 175.891 193.465 194.255 -0.216 -5.344 -0.200 H23 ZUD 37 ZUD H22 H2 H 0 1 N N N N N N 175.439 194.365 195.743 0.505 -3.717 -0.199 H22 ZUD 38 ZUD H13 H4 H 0 1 N N N N N N 173.731 192.672 195.164 1.111 -5.932 -2.210 H13 ZUD 39 ZUD H11 H5 H 0 1 N N N N N N 174.977 191.381 195.239 1.833 -4.305 -2.209 H11 ZUD 40 ZUD H12 H6 H 0 1 N N N N N N 174.525 192.281 196.726 2.170 -5.428 -0.870 H12 ZUD 41 ZUD H111 H7 H 0 0 N N N N N N 184.955 196.006 198.250 -1.131 4.619 0.326 H111 ZUD 42 ZUD H121 H8 H 0 0 N N N N N N 184.981 197.406 196.224 1.031 4.480 -0.834 H121 ZUD 43 ZUD H141 H9 H 0 0 N N N N N N 180.734 197.112 195.960 0.450 0.309 -1.495 H141 ZUD 44 ZUD H151 H10 H 0 0 N N N N N N 181.802 196.626 193.179 3.368 -0.127 -0.927 H151 ZUD 45 ZUD H152 H11 H 0 0 N N N N N N 183.201 195.576 192.771 2.739 0.687 0.526 H152 ZUD 46 ZUD H162 H12 H 0 0 N N N N N N 181.671 196.233 190.827 5.691 0.547 -0.231 H162 ZUD 47 ZUD H161 H13 H 0 0 N N N N N N 182.296 197.906 191.022 5.007 1.201 1.277 H161 ZUD 48 ZUD H171 H14 H 0 0 N N N N N N 184.180 195.501 190.615 4.670 -1.690 0.350 H171 ZUD 49 ZUD H181 H15 H 0 0 N N N N N N 184.099 195.809 188.472 6.740 -2.104 1.237 H181 ZUD 50 ZUD H182 H16 H 0 0 N N N N N N 182.408 196.215 188.922 6.944 -0.361 1.589 H182 ZUD 51 ZUD H192 H17 H 0 0 N N N N N N 183.919 197.963 187.571 6.669 -2.316 3.568 H192 ZUD 52 ZUD H191 H18 H 0 0 N N N N N N 182.816 198.521 188.874 6.201 -0.599 3.800 H191 ZUD 53 ZUD H202 H19 H 0 0 N N N N N N 185.831 198.218 188.905 4.428 -2.958 2.956 H202 ZUD 54 ZUD H201 H20 H 0 0 N N N N N N 184.794 199.375 189.806 4.113 -1.726 4.221 H201 ZUD 55 ZUD H212 H21 H 0 0 N N N N N N 186.759 197.826 190.692 2.780 -2.604 1.449 H212 ZUD 56 ZUD H213 H22 H 0 0 N N N N N N 185.986 196.379 191.423 1.916 -1.514 2.560 H213 ZUD 57 ZUD H211 H23 H 0 0 N N N N N N 186.183 196.487 189.641 2.292 -0.981 0.904 H211 ZUD 58 ZUD H221 H24 H 0 0 N N N N N N 183.434 196.480 200.606 -2.410 4.243 1.943 H221 ZUD 59 ZUD H222 H25 H 0 0 N N N N N N 184.622 195.168 200.298 -3.222 4.605 0.401 H222 ZUD 60 ZUD H232 H26 H 0 0 N N N N N N 182.488 193.768 201.376 -5.258 3.436 1.199 H232 ZUD 61 ZUD H231 H27 H 0 0 N N N N N N 183.922 194.330 202.300 -4.446 3.074 2.741 H231 ZUD 62 ZUD H243 H28 H 0 0 N N N N N N 181.816 194.945 203.449 -5.897 5.075 2.947 H243 ZUD 63 ZUD H242 H29 H 0 0 N N N N N N 182.712 196.407 202.915 -4.183 5.502 3.172 H242 ZUD 64 ZUD H241 H30 H 0 0 N N N N N N 181.278 195.845 201.991 -4.995 5.864 1.630 H241 ZUD 65 ZUD H253 H31 H 0 0 N N N N N N 175.120 193.560 200.597 -5.136 -4.133 1.574 H253 ZUD 66 ZUD H251 H32 H 0 0 N N N N N N 176.671 193.651 201.498 -5.976 -2.987 0.502 H251 ZUD 67 ZUD H252 H33 H 0 0 N N N N N N 175.850 195.159 200.970 -5.690 -4.660 -0.033 H252 ZUD 68 ZUD H32 H34 H 0 1 N N N N N N 177.176 191.923 196.025 -0.440 -3.297 -2.453 H32 ZUD 69 ZUD H31 H35 H 0 1 N N N N N N 177.910 193.418 195.352 -1.162 -4.924 -2.453 H31 ZUD 70 ZUD H51 H36 H 0 1 N N N N N N 184.486 197.111 193.556 4.260 2.611 -0.718 H51 ZUD 71 ZUD H2 H38 H 0 1 N N N N N N 179.747 194.640 196.456 -0.638 -1.094 -1.251 H2 ZUD 72 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ZUD C1 C2 SING N N 1 ZUD C10 C11 DOUB Y N 2 ZUD C10 C9 SING Y N 3 ZUD C10 O4 SING N N 4 ZUD C11 C12 SING Y N 5 ZUD C12 C13 DOUB Y N 6 ZUD C13 C14 SING Y N 7 ZUD C13 S1 SING N N 8 ZUD C14 C9 DOUB Y N 9 ZUD C15 C16 SING N N 10 ZUD C15 N5 SING N N 11 ZUD C16 C17 SING N N 12 ZUD C17 C18 SING N N 13 ZUD C17 N6 SING N N 14 ZUD C18 C19 SING N N 15 ZUD C19 C20 SING N N 16 ZUD C2 C3 SING N N 17 ZUD C20 N6 SING N N 18 ZUD C21 N6 SING N N 19 ZUD C22 C23 SING N N 20 ZUD C22 O4 SING N N 21 ZUD C23 C24 SING N N 22 ZUD C25 N2 SING N N 23 ZUD C3 C4 SING N N 24 ZUD C4 C6 SING Y N 25 ZUD C4 N1 DOUB Y N 26 ZUD C5 C6 DOUB Y N 27 ZUD C5 C8 SING N N 28 ZUD C5 N2 SING Y N 29 ZUD C6 N3 SING N N 30 ZUD C7 C9 SING N N 31 ZUD C7 N3 SING N N 32 ZUD C7 N4 DOUB N N 33 ZUD C8 N4 SING N N 34 ZUD C8 O1 DOUB N N 35 ZUD N1 N2 SING Y N 36 ZUD N5 S1 SING N N 37 ZUD O2 S1 DOUB N N 38 ZUD O3 S1 DOUB N N 39 ZUD C2 H23 SING N N 40 ZUD C2 H22 SING N N 41 ZUD C1 H13 SING N N 42 ZUD C1 H11 SING N N 43 ZUD C1 H12 SING N N 44 ZUD C11 H111 SING N N 45 ZUD C12 H121 SING N N 46 ZUD C14 H141 SING N N 47 ZUD C15 H151 SING N N 48 ZUD C15 H152 SING N N 49 ZUD C16 H162 SING N N 50 ZUD C16 H161 SING N N 51 ZUD C17 H171 SING N N 52 ZUD C18 H181 SING N N 53 ZUD C18 H182 SING N N 54 ZUD C19 H192 SING N N 55 ZUD C19 H191 SING N N 56 ZUD C20 H202 SING N N 57 ZUD C20 H201 SING N N 58 ZUD C21 H212 SING N N 59 ZUD C21 H213 SING N N 60 ZUD C21 H211 SING N N 61 ZUD C22 H221 SING N N 62 ZUD C22 H222 SING N N 63 ZUD C23 H232 SING N N 64 ZUD C23 H231 SING N N 65 ZUD C24 H243 SING N N 66 ZUD C24 H242 SING N N 67 ZUD C24 H241 SING N N 68 ZUD C25 H253 SING N N 69 ZUD C25 H251 SING N N 70 ZUD C25 H252 SING N N 71 ZUD C3 H32 SING N N 72 ZUD C3 H31 SING N N 73 ZUD N5 H51 SING N N 74 ZUD N3 H2 SING N N 75 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ZUD SMILES ACDLabs 12.01 "CN1CCCC1CCNS(=O)(=O)c1cc(C2=NC(=O)c3c(N2)c(nn3C)CCC)c(OCCC)cc1" ZUD InChI InChI 1.06 "InChI=1S/C25H36N6O4S/c1-5-8-20-22-23(31(4)29-20)25(32)28-24(27-22)19-16-18(10-11-21(19)35-15-6-2)36(33,34)26-13-12-17-9-7-14-30(17)3/h10-11,16-17,26H,5-9,12-15H2,1-4H3,(H,27,28,32)/t17-/m1/s1" ZUD InChIKey InChI 1.06 IYFNEFQTYQPVOC-QGZVFWFLSA-N ZUD SMILES_CANONICAL CACTVS 3.385 "CCCOc1ccc(cc1C2=NC(=O)c3n(C)nc(CCC)c3N2)[S](=O)(=O)NCC[C@H]4CCCN4C" ZUD SMILES CACTVS 3.385 "CCCOc1ccc(cc1C2=NC(=O)c3n(C)nc(CCC)c3N2)[S](=O)(=O)NCC[CH]4CCCN4C" ZUD SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCc1c2c(n(n1)C)C(=O)N=C(N2)c3cc(ccc3OCCC)S(=O)(=O)NCC[C@H]4CCCN4C" ZUD SMILES "OpenEye OEToolkits" 2.0.7 "CCCc1c2c(n(n1)C)C(=O)N=C(N2)c3cc(ccc3OCCC)S(=O)(=O)NCCC4CCCN4C" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ZUD "SYSTEMATIC NAME" ACDLabs 12.01 "(3P)-3-(1-methyl-7-oxo-3-propyl-4,7-dihydro-1H-pyrazolo[4,3-d]pyrimidin-5-yl)-N-{2-[(2R)-1-methylpyrrolidin-2-yl]ethyl}-4-propoxybenzene-1-sulfonamide" ZUD "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "3-(1-methyl-7-oxidanylidene-3-propyl-4~{H}-pyrazolo[4,3-d]pyrimidin-5-yl)-~{N}-[2-[(2~{R})-1-methylpyrrolidin-2-yl]ethyl]-4-propoxy-benzenesulfonamide" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id ZUD _pdbx_chem_comp_synonyms.name "(3P)-3-(1-methyl-7-oxo-3-propyl-4,7-dihydro-1H-pyrazolo[4,3-d]pyrimidin-5-yl)-N-{2-[(2R)-1-methylpyrrolidin-2-yl]ethyl}-4-propoxybenzene-1-sulfonamide" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site ZUD "Create component" 2023-10-06 RCSB ZUD "Initial release" 2024-01-17 RCSB #