data_ZV1 # _chem_comp.id ZV1 _chem_comp.name "N-{4-[5-(2-amino-4-oxo-3,4-dihydro-5H-pyrrolo[3,2-d]pyrimidin-5-yl)pentyl]-2-fluorobenzoyl}-D-glutamic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C23 H26 F N5 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-04-05 _chem_comp.pdbx_modified_date 2024-03-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 487.481 _chem_comp.one_letter_code ? _chem_comp.three_letter_code ZV1 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8GKU _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal ZV1 C12 C1 C 0 1 Y N N N N N -37.073 74.025 3.639 -3.277 -1.484 -0.026 C12 ZV1 1 ZV1 C13 C2 C 0 1 Y N N N N N -37.955 73.209 2.951 -2.623 -2.544 -0.662 C13 ZV1 2 ZV1 C14 C3 C 0 1 Y N N N N N -36.069 73.464 4.408 -2.638 -0.799 1.009 C14 ZV1 3 ZV1 C15 C4 C 0 1 Y N N N N N -37.826 71.831 3.025 -1.350 -2.905 -0.261 C15 ZV1 4 ZV1 C16 C5 C 0 1 Y N N N N N -35.937 72.087 4.483 -1.369 -1.171 1.398 C16 ZV1 5 ZV1 C17 C6 C 0 1 N N N N N N -37.226 75.542 3.558 -4.635 -1.086 -0.452 C17 ZV1 6 ZV1 C20 C7 C 0 1 N N R N N N -38.663 77.516 2.782 -6.606 0.333 -0.263 C20 ZV1 7 ZV1 C21 C8 C 0 1 N N N N N N -38.644 78.177 4.161 -7.625 -0.521 0.446 C21 ZV1 8 ZV1 C24 C9 C 0 1 N N N N N N -37.647 78.194 1.863 -6.840 1.804 0.088 C24 ZV1 9 ZV1 C25 C10 C 0 1 N N N N N N -38.328 78.751 0.613 -5.888 2.681 -0.727 C25 ZV1 10 ZV1 C26 C11 C 0 1 N N N N N N -38.385 80.277 0.605 -6.119 4.129 -0.381 C26 ZV1 11 ZV1 C29 C12 C 0 1 N N N N N N -35.126 66.166 5.626 5.544 -1.859 0.454 C29 ZV1 12 ZV1 C30 C13 C 0 1 N N N N N N -35.421 67.588 5.142 4.135 -1.454 0.016 C30 ZV1 13 ZV1 C31 C14 C 0 1 N N N N N N -36.511 68.288 5.954 3.103 -2.240 0.826 C31 ZV1 14 ZV1 C32 C15 C 0 1 N N N N N N -37.397 69.198 5.104 1.694 -1.834 0.387 C32 ZV1 15 ZV1 C33 C16 C 0 1 N N N N N N -36.675 69.756 3.878 0.661 -2.620 1.198 C33 ZV1 16 ZV1 C02 C17 C 0 1 N N N N N N -39.323 63.538 3.604 8.270 2.554 0.008 C02 ZV1 17 ZV1 C04 C18 C 0 1 N N N N N N -37.190 64.831 3.546 6.725 1.080 1.005 C04 ZV1 18 ZV1 C05 C19 C 0 1 Y N N N N N -37.952 64.508 7.143 7.994 -0.590 -1.900 C05 ZV1 19 ZV1 C06 C20 C 0 1 Y N N N N N -36.766 65.227 7.193 7.147 -1.540 -1.456 C06 ZV1 20 ZV1 C08 C21 C 0 1 Y N N N N N -37.191 64.890 5.078 6.994 0.158 -0.023 C08 ZV1 21 ZV1 C09 C22 C 0 1 Y N N N N N -38.221 64.291 5.784 7.923 0.505 -1.011 C09 ZV1 22 ZV1 C34 C23 C 0 1 Y N N N N N -36.817 71.272 3.791 -0.726 -2.221 0.766 C34 ZV1 23 ZV1 F35 F1 F 0 1 N N N N N N -38.947 73.766 2.197 -3.233 -3.213 -1.665 F35 ZV1 24 ZV1 N01 N1 N 0 1 N N N N N N -39.320 63.596 5.069 8.533 1.706 -0.958 N01 ZV1 25 ZV1 N03 N2 N 0 1 N N N N N N -38.251 64.160 2.853 7.374 2.265 0.996 N03 ZV1 26 ZV1 N07 N3 N 0 1 Y N N N N N -36.344 65.443 5.957 6.532 -1.107 -0.322 N07 ZV1 27 ZV1 N11 N4 N 0 1 N N N N N N -40.398 62.857 2.910 8.918 3.765 0.029 N11 ZV1 28 ZV1 N19 N5 N 0 1 N N N N N N -38.408 76.088 2.907 -5.260 -0.061 0.159 N19 ZV1 29 ZV1 O17 O1 O 0 1 N N N N N N -36.321 65.335 2.918 5.922 0.816 1.885 O17 ZV1 30 ZV1 O18 O2 O 0 1 N N N N N N -36.394 76.245 4.028 -5.188 -1.685 -1.354 O18 ZV1 31 ZV1 O22 O3 O 0 1 N N N N N N -38.324 79.389 4.273 -7.264 -1.372 1.224 O22 ZV1 32 ZV1 O23 O4 O 0 1 N N N N N N -38.951 77.509 5.184 -8.934 -0.337 0.213 O23 ZV1 33 ZV1 O27 O5 O 0 1 N N N N N N -39.237 80.867 -0.110 -6.959 4.430 0.433 O27 ZV1 34 ZV1 O28 O6 O 0 1 N N N N N N -37.585 80.943 1.313 -5.391 5.086 -0.978 O28 ZV1 35 ZV1 H1 H1 H 0 1 N N N N N N -35.387 74.101 4.951 -3.137 0.021 1.505 H1 ZV1 36 ZV1 H2 H2 H 0 1 N N N N N N -38.512 71.194 2.486 -0.843 -3.724 -0.750 H2 ZV1 37 ZV1 H3 H3 H 0 1 N N N N N N -35.150 71.650 5.080 -0.874 -0.641 2.199 H3 ZV1 38 ZV1 H4 H4 H 0 1 N N N N N N -39.663 77.663 2.349 -6.703 0.197 -1.340 H4 ZV1 39 ZV1 H5 H5 H 0 1 N N N N N N -36.887 77.458 1.561 -7.871 2.073 -0.145 H5 ZV1 40 ZV1 H6 H6 H 0 1 N N N N N N -37.163 79.019 2.407 -6.656 1.958 1.151 H6 ZV1 41 ZV1 H7 H7 H 0 1 N N N N N N -39.355 78.360 0.568 -4.858 2.412 -0.494 H7 ZV1 42 ZV1 H8 H8 H 0 1 N N N N N N -37.768 78.415 -0.272 -6.072 2.527 -1.790 H8 ZV1 43 ZV1 H9 H9 H 0 1 N N N N N N -34.595 65.623 4.831 5.671 -1.641 1.515 H9 ZV1 44 ZV1 H10 H10 H 0 1 N N N N N N -34.490 66.220 6.522 5.684 -2.927 0.284 H10 ZV1 45 ZV1 H11 H11 H 0 1 N N N N N N -34.497 68.180 5.214 3.995 -0.386 0.186 H11 ZV1 46 ZV1 H12 H12 H 0 1 N N N N N N -35.744 67.540 4.092 4.008 -1.672 -1.044 H12 ZV1 47 ZV1 H13 H13 H 0 1 N N N N N N -36.031 68.896 6.735 3.243 -3.307 0.656 H13 ZV1 48 ZV1 H14 H14 H 0 1 N N N N N N -37.145 67.522 6.424 3.230 -2.021 1.886 H14 ZV1 49 ZV1 H15 H15 H 0 1 N N N N N N -37.734 70.040 5.726 1.554 -0.767 0.558 H15 ZV1 50 ZV1 H16 H16 H 0 1 N N N N N N -38.270 68.621 4.765 1.567 -2.053 -0.673 H16 ZV1 51 ZV1 H17 H17 H 0 1 N N N N N N -37.105 69.304 2.972 0.802 -3.688 1.027 H17 ZV1 52 ZV1 H18 H18 H 0 1 N N N N N N -35.607 69.500 3.944 0.789 -2.402 2.258 H18 ZV1 53 ZV1 H19 H19 H 0 1 N N N N N N -38.548 64.181 7.982 8.618 -0.655 -2.780 H19 ZV1 54 ZV1 H20 H20 H 0 1 N N N N N N -36.269 65.556 8.093 6.981 -2.497 -1.928 H20 ZV1 55 ZV1 H21 H21 H 0 1 N N N N N N -38.251 64.121 1.854 7.202 2.914 1.695 H21 ZV1 56 ZV1 H22 H22 H 0 1 N N N N N N -41.136 62.428 3.430 9.561 3.982 -0.665 H22 ZV1 57 ZV1 H23 H23 H 0 1 N N N N N N -40.402 62.817 1.911 8.734 4.402 0.736 H23 ZV1 58 ZV1 H24 H24 H 0 1 N N N N N N -39.078 75.451 2.527 -4.818 0.417 0.879 H24 ZV1 59 ZV1 H25 H25 H 0 1 N N N N N N -38.891 78.062 5.954 -9.550 -0.909 0.691 H25 ZV1 60 ZV1 H26 H26 H 0 1 N N N N N N -37.754 81.870 1.195 -5.575 6.001 -0.724 H26 ZV1 61 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ZV1 O27 C26 DOUB N N 1 ZV1 C26 C25 SING N N 2 ZV1 C26 O28 SING N N 3 ZV1 C25 C24 SING N N 4 ZV1 C24 C20 SING N N 5 ZV1 F35 C13 SING N N 6 ZV1 C20 N19 SING N N 7 ZV1 C20 C21 SING N N 8 ZV1 N03 C04 SING N N 9 ZV1 N03 C02 SING N N 10 ZV1 N19 C17 SING N N 11 ZV1 N11 C02 SING N N 12 ZV1 O17 C04 DOUB N N 13 ZV1 C13 C15 DOUB Y N 14 ZV1 C13 C12 SING Y N 15 ZV1 C15 C34 SING Y N 16 ZV1 C04 C08 SING N N 17 ZV1 C17 C12 SING N N 18 ZV1 C17 O18 DOUB N N 19 ZV1 C02 N01 DOUB N N 20 ZV1 C12 C14 DOUB Y N 21 ZV1 C34 C33 SING N N 22 ZV1 C34 C16 DOUB Y N 23 ZV1 C33 C32 SING N N 24 ZV1 C21 O22 DOUB N N 25 ZV1 C21 O23 SING N N 26 ZV1 C14 C16 SING Y N 27 ZV1 N01 C09 SING N N 28 ZV1 C08 C09 DOUB Y N 29 ZV1 C08 N07 SING Y N 30 ZV1 C32 C31 SING N N 31 ZV1 C30 C29 SING N N 32 ZV1 C30 C31 SING N N 33 ZV1 C29 N07 SING N N 34 ZV1 C09 C05 SING Y N 35 ZV1 N07 C06 SING Y N 36 ZV1 C05 C06 DOUB Y N 37 ZV1 C14 H1 SING N N 38 ZV1 C15 H2 SING N N 39 ZV1 C16 H3 SING N N 40 ZV1 C20 H4 SING N N 41 ZV1 C24 H5 SING N N 42 ZV1 C24 H6 SING N N 43 ZV1 C25 H7 SING N N 44 ZV1 C25 H8 SING N N 45 ZV1 C29 H9 SING N N 46 ZV1 C29 H10 SING N N 47 ZV1 C30 H11 SING N N 48 ZV1 C30 H12 SING N N 49 ZV1 C31 H13 SING N N 50 ZV1 C31 H14 SING N N 51 ZV1 C32 H15 SING N N 52 ZV1 C32 H16 SING N N 53 ZV1 C33 H17 SING N N 54 ZV1 C33 H18 SING N N 55 ZV1 C05 H19 SING N N 56 ZV1 C06 H20 SING N N 57 ZV1 N11 H22 SING N N 58 ZV1 N11 H23 SING N N 59 ZV1 N19 H24 SING N N 60 ZV1 O23 H25 SING N N 61 ZV1 O28 H26 SING N N 62 ZV1 N03 H21 SING N N 63 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ZV1 SMILES ACDLabs 12.01 "O=C(O)C(CCC(=O)O)NC(=O)c1ccc(cc1F)CCCCCn1ccc2N=C(N)NC(=O)c21" ZV1 InChI InChI 1.06 "InChI=1S/C23H26FN5O6/c24-15-12-13(5-6-14(15)20(32)26-17(22(34)35)7-8-18(30)31)4-2-1-3-10-29-11-9-16-19(29)21(33)28-23(25)27-16/h5-6,9,11-12,17H,1-4,7-8,10H2,(H,26,32)(H,30,31)(H,34,35)(H3,25,27,28,33)/t17-/m1/s1" ZV1 InChIKey InChI 1.06 SPSKTOLBULFCQW-QGZVFWFLSA-N ZV1 SMILES_CANONICAL CACTVS 3.385 "NC1=Nc2ccn(CCCCCc3ccc(c(F)c3)C(=O)N[C@H](CCC(O)=O)C(O)=O)c2C(=O)N1" ZV1 SMILES CACTVS 3.385 "NC1=Nc2ccn(CCCCCc3ccc(c(F)c3)C(=O)N[CH](CCC(O)=O)C(O)=O)c2C(=O)N1" ZV1 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(c(cc1CCCCCn2ccc3c2C(=O)NC(=N3)N)F)C(=O)N[C@H](CCC(=O)O)C(=O)O" ZV1 SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(c(cc1CCCCCn2ccc3c2C(=O)NC(=N3)N)F)C(=O)NC(CCC(=O)O)C(=O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ZV1 "SYSTEMATIC NAME" ACDLabs 12.01 "N-{4-[5-(2-amino-4-oxo-3,4-dihydro-5H-pyrrolo[3,2-d]pyrimidin-5-yl)pentyl]-2-fluorobenzoyl}-D-glutamic acid" ZV1 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{R})-2-[[4-[5-(2-azanyl-4-oxidanylidene-3~{H}-pyrrolo[3,2-d]pyrimidin-5-yl)pentyl]-2-fluoranyl-phenyl]carbonylamino]pentanedioic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site ZV1 "Create component" 2023-04-05 RCSB ZV1 "Initial release" 2024-03-20 RCSB #