data_ZV4
#
_chem_comp.id ZV4
_chem_comp.name "(2S)-2-azanyl-3-(4-phosphonophenyl)propanoic acid"
_chem_comp.type "L-peptide linking"
_chem_comp.pdbx_type ATOMP
_chem_comp.formula "C9 H12 N O5 P"
_chem_comp.mon_nstd_parent_comp_id PHE
_chem_comp.pdbx_synonyms phosphophenylalanine
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2023-04-06
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 245.169
_chem_comp.one_letter_code F
_chem_comp.three_letter_code ZV4
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag Y
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 2K9E
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBJ
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
ZV4 CA CA C 0 1 N N S Y N N -3.280 11.189 -12.778 -3.151 -0.062 0.434 CA ZV4 1
ZV4 N N N 0 1 N N N Y Y N -2.225 12.156 -13.193 -2.884 -1.460 0.799 N ZV4 2
ZV4 CB CB C 0 1 N N N N N N -3.391 10.072 -13.817 -2.408 0.278 -0.859 CB ZV4 3
ZV4 CG CG C 0 1 Y N N N N N -4.122 8.895 -13.215 -0.922 0.205 -0.620 CG ZV4 4
ZV4 CD1 CD1 C 0 1 Y N N N N N -5.513 8.925 -13.084 -0.248 -0.986 -0.818 CD1 ZV4 5
ZV4 CD2 CD2 C 0 1 Y N N N N N -3.406 7.774 -12.787 -0.232 1.329 -0.207 CD2 ZV4 6
ZV4 CE1 CE1 C 0 1 Y N N N N N -6.188 7.834 -12.524 1.115 -1.053 -0.599 CE1 ZV4 7
ZV4 CE2 CE2 C 0 1 Y N N N N N -4.080 6.682 -12.227 1.131 1.262 0.012 CE2 ZV4 8
ZV4 CZ CZ C 0 1 Y N N N N N -5.476 6.707 -12.092 1.804 0.070 -0.181 CZ ZV4 9
ZV4 PZ PZ P 0 1 N N N N N N -6.332 5.326 -11.387 3.593 -0.018 0.108 PZ ZV4 10
ZV4 O1P O1P O 0 1 N N N N N N -5.689 5.026 -10.031 3.910 -1.199 1.155 O1P ZV4 11
ZV4 O2P O2P O 0 1 N N N N N N -6.180 4.146 -12.349 4.286 -0.292 -1.171 O2P ZV4 12
ZV4 O3P O3P O 0 1 N N N N N N -7.800 5.725 -11.228 4.109 1.384 0.708 O3P ZV4 13
ZV4 C C C 0 1 N N N Y N Y -2.915 10.600 -11.421 -4.631 0.130 0.229 C ZV4 14
ZV4 O O O 0 1 N N N Y N Y -1.861 9.984 -11.266 -5.340 -0.825 0.013 O ZV4 15
ZV4 HA HA H 0 1 N N N Y N N -4.247 11.707 -12.700 -2.806 0.594 1.234 HA ZV4 16
ZV4 H H2 H 0 1 N N N Y Y N -2.154 12.885 -12.512 -3.194 -2.089 0.073 H3N ZV4 17
ZV4 H2 H3 H 0 1 N Y N Y Y N -1.348 11.681 -13.265 -1.906 -1.600 1.005 H1N ZV4 18
ZV4 H2B H2B H 0 1 N N N N N N -2.383 9.758 -14.127 -2.687 -0.435 -1.636 H2B ZV4 19
ZV4 H1B H1B H 0 1 N N N N N N -3.946 10.440 -14.693 -2.676 1.285 -1.178 H1B ZV4 20
ZV4 HD1 HD1 H 0 1 N N N N N N -6.068 9.791 -13.415 -0.786 -1.863 -1.145 HD1 ZV4 21
ZV4 HD2 HD2 H 0 1 N N N N N N -2.331 7.750 -12.888 -0.758 2.260 -0.057 HD2 ZV4 22
ZV4 HE1 HE1 H 0 1 N N N N N N -7.263 7.861 -12.424 1.642 -1.983 -0.753 HE1 ZV4 23
ZV4 HE2 HE2 H 0 1 N N N N N N -3.523 5.817 -11.898 1.670 2.141 0.334 HE2 ZV4 24
ZV4 H11 H11 H 0 1 N N N N N N -5.313 4.154 -10.044 3.487 -1.085 2.017 H1 ZV4 25
ZV4 H12 H12 H 0 1 N N N N N N -8.343 5.158 -11.763 5.059 1.409 0.887 H2 ZV4 26
ZV4 OXT OXT O 0 1 N Y N Y N Y ? ? ? -5.162 1.361 0.288 OXT ZV4 27
ZV4 HXT HXT H 0 1 N Y N Y N Y ? ? ? -6.117 1.434 0.150 H3 ZV4 28
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
ZV4 CB CG SING N N 1
ZV4 CB CA SING N N 2
ZV4 CG CD1 DOUB Y N 3
ZV4 CG CD2 SING Y N 4
ZV4 N CA SING N N 5
ZV4 CD1 CE1 SING Y N 6
ZV4 CD2 CE2 DOUB Y N 7
ZV4 CA C SING N N 8
ZV4 CE1 CZ DOUB Y N 9
ZV4 O2P PZ DOUB N N 10
ZV4 CE2 CZ SING Y N 11
ZV4 CZ PZ SING N N 12
ZV4 C O DOUB N N 13
ZV4 PZ O3P SING N N 14
ZV4 PZ O1P SING N N 15
ZV4 CA HA SING N N 16
ZV4 N H SING N N 17
ZV4 N H2 SING N N 18
ZV4 CB H2B SING N N 19
ZV4 CB H1B SING N N 20
ZV4 CD1 HD1 SING N N 21
ZV4 CD2 HD2 SING N N 22
ZV4 CE1 HE1 SING N N 23
ZV4 CE2 HE2 SING N N 24
ZV4 O1P H11 SING N N 25
ZV4 O3P H12 SING N N 26
ZV4 C OXT SING N N 27
ZV4 OXT HXT SING N N 28
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
ZV4 InChI InChI 1.06 "InChI=1S/C9H12NO5P/c10-8(9(11)12)5-6-1-3-7(4-2-6)16(13,14)15/h1-4,8H,5,10H2,(H,11,12)(H2,13,14,15)/t8-/m0/s1"
ZV4 InChIKey InChI 1.06 DGIHNAYKZDFPPV-QMMMGPOBSA-N
ZV4 SMILES_CANONICAL CACTVS 3.385 "N[C@@H](Cc1ccc(cc1)[P](O)(O)=O)C(O)=O"
ZV4 SMILES CACTVS 3.385 "N[CH](Cc1ccc(cc1)[P](O)(O)=O)C(O)=O"
ZV4 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1C[C@@H](C(=O)O)N)P(=O)(O)O"
ZV4 SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1CC(C(=O)O)N)P(=O)(O)O"
#
_pdbx_chem_comp_identifier.comp_id ZV4
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier "(2~{S})-2-azanyl-3-(4-phosphonophenyl)propanoic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
ZV4 "Create component" 2023-04-06 PDBJ
ZV4 "Initial release" 2023-04-19 RCSB
ZV4 "Modify backbone" 2023-11-03 PDBE
ZV4 "Modify PCM" 2024-09-27 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id ZV4
_pdbx_chem_comp_synonyms.name phosphophenylalanine
_pdbx_chem_comp_synonyms.provenance PDB
_pdbx_chem_comp_synonyms.type ?
#
_pdbx_chem_comp_pcm.pcm_id 1
_pdbx_chem_comp_pcm.comp_id ZV4
_pdbx_chem_comp_pcm.modified_residue_id PHE
_pdbx_chem_comp_pcm.type Phosphorylation
_pdbx_chem_comp_pcm.category "Named protein modification"
_pdbx_chem_comp_pcm.position "Amino-acid side chain"
_pdbx_chem_comp_pcm.polypeptide_position "Any position"
_pdbx_chem_comp_pcm.comp_id_linking_atom ?
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom ?
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ?
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ?
#