data_ZVP # _chem_comp.id ZVP _chem_comp.name "7-[7-oxo-5-(piperazin-1-yl)-7H-thieno[3,2-b]pyran-3-yl]-N-[(pyridin-3-yl)methyl]-2,3-dihydro-1,4-benzodioxine-5-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C26 H24 N4 O5 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-06-01 _chem_comp.pdbx_modified_date 2020-07-31 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 504.558 _chem_comp.one_letter_code ? _chem_comp.three_letter_code ZVP _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6X7B _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal ZVP C03 C1 C 0 1 N N N -6.968 0.494 -3.977 1.138 5.084 -1.193 C03 ZVP 1 ZVP C04 C2 C 0 1 N N N -6.311 0.623 -5.349 -0.380 5.017 -0.976 C04 ZVP 2 ZVP C05 C3 C 0 1 Y N N -5.401 2.715 -4.611 -0.153 2.665 -1.242 C05 ZVP 3 ZVP C06 C4 C 0 1 Y N N -5.454 2.201 -3.224 1.144 2.749 -0.749 C06 ZVP 4 ZVP C07 C5 C 0 1 Y N N -4.791 2.994 -2.162 1.858 1.579 -0.457 C07 ZVP 5 ZVP C08 C6 C 0 1 Y N N -4.159 4.174 -2.524 1.262 0.332 -0.660 C08 ZVP 6 ZVP C09 C7 C 0 1 Y N N -4.136 4.625 -3.843 -0.034 0.258 -1.151 C09 ZVP 7 ZVP C10 C8 C 0 1 Y N N -4.746 3.912 -4.874 -0.740 1.427 -1.441 C10 ZVP 8 ZVP C11 C9 C 0 1 N N N -4.789 2.559 -0.727 3.236 1.663 0.064 C11 ZVP 9 ZVP C14 C10 C 0 1 N N N -5.772 1.244 1.055 5.288 0.621 0.863 C14 ZVP 10 ZVP C16 C11 C 0 1 Y N N -5.913 -1.226 0.580 6.497 -1.434 0.084 C16 ZVP 11 ZVP C17 C12 C 0 1 Y N N -6.487 -0.084 1.126 5.825 -0.768 1.092 C17 ZVP 12 ZVP C18 C13 C 0 1 Y N N -7.728 -0.168 1.740 5.652 -1.394 2.316 C18 ZVP 13 ZVP C19 C14 C 0 1 Y N N -8.359 -1.402 1.782 6.163 -2.673 2.482 C19 ZVP 14 ZVP C20 C15 C 0 1 Y N N -7.746 -2.516 1.223 6.823 -3.276 1.429 C20 ZVP 15 ZVP C22 C16 C 0 1 N N N -2.408 9.351 -2.836 -3.642 -3.147 -0.762 C22 ZVP 16 ZVP C23 C17 C 0 1 N N N -2.954 9.294 -1.553 -4.459 -2.268 -0.023 C23 ZVP 17 ZVP C24 C18 C 0 1 N N N -3.648 8.157 -1.111 -4.001 -1.017 0.252 C24 ZVP 18 ZVP C26 C19 C 0 1 Y N N -2.606 8.153 -3.685 -2.327 -2.658 -1.201 C26 ZVP 19 ZVP C27 C20 C 0 1 Y N N -3.343 7.020 -3.134 -1.948 -1.374 -0.876 C27 ZVP 20 ZVP C28 C21 C 0 1 Y N N -3.436 5.905 -4.133 -0.671 -1.065 -1.367 C28 ZVP 21 ZVP C29 C22 C 0 1 Y N N -2.795 6.237 -5.345 -0.067 -2.049 -2.047 C29 ZVP 22 ZVP C30 C23 C 0 1 N N N -5.075 6.978 0.487 -4.751 1.291 0.740 C30 ZVP 23 ZVP C31 C24 C 0 1 N N N -4.689 6.452 1.863 -4.555 1.994 2.088 C31 ZVP 24 ZVP C33 C25 C 0 1 N N N -3.642 8.489 2.490 -5.486 0.109 3.297 C33 ZVP 25 ZVP C34 C26 C 0 1 N N N -3.906 9.153 1.143 -5.720 -0.671 1.999 C34 ZVP 26 ZVP N13 N1 N 0 1 N N N -5.631 1.607 -0.340 3.920 0.537 0.345 N13 ZVP 27 ZVP N15 N2 N 0 1 Y N N -6.547 -2.404 0.639 6.970 -2.650 0.278 N15 ZVP 28 ZVP N32 N3 N 0 1 N N N -4.728 7.558 2.827 -5.595 1.549 3.025 N32 ZVP 29 ZVP N35 N4 N 0 1 N N N -4.195 8.100 0.176 -4.798 -0.161 0.974 N35 ZVP 30 ZVP O01 O1 O 0 1 N N N -6.005 1.994 -5.604 -0.859 3.791 -1.538 O01 ZVP 31 ZVP O02 O2 O 0 1 N N N -6.100 1.021 -2.972 1.733 3.956 -0.543 O02 ZVP 32 ZVP O12 O3 O 0 1 N N N -4.019 3.094 0.054 3.753 2.749 0.241 O12 ZVP 33 ZVP O21 O4 O 0 1 N N N -3.828 7.049 -1.905 -2.802 -0.594 -0.157 O21 ZVP 34 ZVP O36 O5 O 0 1 N N N -1.787 10.356 -3.251 -4.013 -4.281 -1.027 O36 ZVP 35 ZVP S25 S1 S 0 1 Y N N -2.104 7.843 -5.249 -1.051 -3.439 -2.123 S25 ZVP 36 ZVP H1 H1 H 0 1 N N N -7.915 1.054 -3.972 1.358 5.051 -2.260 H1 ZVP 37 ZVP H2 H2 H 0 1 N N N -7.168 -0.567 -3.767 1.531 6.005 -0.765 H2 ZVP 38 ZVP H3 H3 H 0 1 N N N -7.000 0.251 -6.122 -0.600 5.043 0.091 H3 ZVP 39 ZVP H4 H4 H 0 1 N N N -5.384 0.031 -5.369 -0.860 5.861 -1.471 H4 ZVP 40 ZVP H5 H5 H 0 1 N N N -3.670 4.761 -1.761 1.809 -0.572 -0.436 H5 ZVP 41 ZVP H6 H6 H 0 1 N N N -4.709 4.293 -5.884 -1.748 1.365 -1.823 H6 ZVP 42 ZVP H7 H7 H 0 1 N N N -4.779 1.158 1.520 5.288 1.171 1.804 H7 ZVP 43 ZVP H8 H8 H 0 1 N N N -6.358 2.011 1.582 5.919 1.140 0.140 H8 ZVP 44 ZVP H9 H9 H 0 1 N N N -4.946 -1.163 0.103 6.632 -0.955 -0.874 H9 ZVP 45 ZVP H10 H10 H 0 1 N N N -8.191 0.706 2.174 5.131 -0.898 3.122 H10 ZVP 46 ZVP H11 H11 H 0 1 N N N -9.328 -1.497 2.250 6.046 -3.190 3.423 H11 ZVP 47 ZVP H12 H12 H 0 1 N N N -8.239 -3.476 1.260 7.224 -4.271 1.550 H12 ZVP 48 ZVP H13 H13 H 0 1 N N N -2.841 10.139 -0.889 -5.434 -2.583 0.320 H13 ZVP 49 ZVP H14 H14 H 0 1 N N N -2.738 5.592 -6.209 0.915 -1.973 -2.489 H14 ZVP 50 ZVP H15 H15 H 0 1 N N N -6.122 7.315 0.495 -5.687 1.619 0.288 H15 ZVP 51 ZVP H16 H16 H 0 1 N N N -4.951 6.185 -0.265 -3.920 1.531 0.077 H16 ZVP 52 ZVP H17 H17 H 0 1 N N N -5.398 5.670 2.171 -3.573 1.745 2.489 H17 ZVP 53 ZVP H18 H18 H 0 1 N N N -3.673 6.032 1.825 -4.628 3.073 1.949 H18 ZVP 54 ZVP H19 H19 H 0 1 N N N -2.693 7.935 2.441 -6.234 -0.179 4.035 H19 ZVP 55 ZVP H20 H20 H 0 1 N N N -3.575 9.263 3.268 -4.491 -0.114 3.681 H20 ZVP 56 ZVP H21 H21 H 0 1 N N N -3.019 9.720 0.825 -5.528 -1.731 2.169 H21 ZVP 57 ZVP H22 H22 H 0 1 N N N -4.766 9.834 1.224 -6.750 -0.534 1.670 H22 ZVP 58 ZVP H23 H23 H 0 1 N N N -6.180 1.131 -1.027 3.507 -0.329 0.205 H23 ZVP 59 ZVP H24 H24 H 0 1 N N N -5.609 8.028 2.769 -5.562 2.082 3.881 H24 ZVP 60 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ZVP O01 C04 SING N N 1 ZVP O01 C05 SING N N 2 ZVP C04 C03 SING N N 3 ZVP C29 S25 SING Y N 4 ZVP C29 C28 DOUB Y N 5 ZVP S25 C26 SING Y N 6 ZVP C10 C05 DOUB Y N 7 ZVP C10 C09 SING Y N 8 ZVP C05 C06 SING Y N 9 ZVP C28 C09 SING N N 10 ZVP C28 C27 SING Y N 11 ZVP C03 O02 SING N N 12 ZVP C09 C08 DOUB Y N 13 ZVP C26 C27 DOUB Y N 14 ZVP C26 C22 SING N N 15 ZVP O36 C22 DOUB N N 16 ZVP C06 O02 SING N N 17 ZVP C06 C07 DOUB Y N 18 ZVP C27 O21 SING N N 19 ZVP C22 C23 SING N N 20 ZVP C08 C07 SING Y N 21 ZVP C07 C11 SING N N 22 ZVP O21 C24 SING N N 23 ZVP C23 C24 DOUB N N 24 ZVP C24 N35 SING N N 25 ZVP C11 N13 SING N N 26 ZVP C11 O12 DOUB N N 27 ZVP N13 C14 SING N N 28 ZVP N35 C30 SING N N 29 ZVP N35 C34 SING N N 30 ZVP C30 C31 SING N N 31 ZVP C16 N15 DOUB Y N 32 ZVP C16 C17 SING Y N 33 ZVP N15 C20 SING Y N 34 ZVP C14 C17 SING N N 35 ZVP C17 C18 DOUB Y N 36 ZVP C34 C33 SING N N 37 ZVP C20 C19 DOUB Y N 38 ZVP C18 C19 SING Y N 39 ZVP C31 N32 SING N N 40 ZVP C33 N32 SING N N 41 ZVP C03 H1 SING N N 42 ZVP C03 H2 SING N N 43 ZVP C04 H3 SING N N 44 ZVP C04 H4 SING N N 45 ZVP C08 H5 SING N N 46 ZVP C10 H6 SING N N 47 ZVP C14 H7 SING N N 48 ZVP C14 H8 SING N N 49 ZVP C16 H9 SING N N 50 ZVP C18 H10 SING N N 51 ZVP C19 H11 SING N N 52 ZVP C20 H12 SING N N 53 ZVP C23 H13 SING N N 54 ZVP C29 H14 SING N N 55 ZVP C30 H15 SING N N 56 ZVP C30 H16 SING N N 57 ZVP C31 H17 SING N N 58 ZVP C31 H18 SING N N 59 ZVP C33 H19 SING N N 60 ZVP C33 H20 SING N N 61 ZVP C34 H21 SING N N 62 ZVP C34 H22 SING N N 63 ZVP N13 H23 SING N N 64 ZVP N32 H24 SING N N 65 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ZVP SMILES ACDLabs 12.01 "C6Oc1c(cc(cc1C(NCc2cnccc2)=O)c5c4c(C(C=C(N3CCNCC3)O4)=O)sc5)OC6" ZVP InChI InChI 1.03 "InChI=1S/C26H24N4O5S/c31-20-12-22(30-6-4-27-5-7-30)35-24-19(15-36-25(20)24)17-10-18(23-21(11-17)33-8-9-34-23)26(32)29-14-16-2-1-3-28-13-16/h1-3,10-13,15,27H,4-9,14H2,(H,29,32)" ZVP InChIKey InChI 1.03 AECKABHTJWABMG-UHFFFAOYSA-N ZVP SMILES_CANONICAL CACTVS 3.385 "O=C(NCc1cccnc1)c2cc(cc3OCCOc23)c4csc5C(=O)C=C(Oc45)N6CCNCC6" ZVP SMILES CACTVS 3.385 "O=C(NCc1cccnc1)c2cc(cc3OCCOc23)c4csc5C(=O)C=C(Oc45)N6CCNCC6" ZVP SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(cnc1)CNC(=O)c2cc(cc3c2OCCO3)c4csc5c4OC(=CC5=O)N6CCNCC6" ZVP SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(cnc1)CNC(=O)c2cc(cc3c2OCCO3)c4csc5c4OC(=CC5=O)N6CCNCC6" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ZVP "SYSTEMATIC NAME" ACDLabs 12.01 "7-[7-oxo-5-(piperazin-1-yl)-7H-thieno[3,2-b]pyran-3-yl]-N-[(pyridin-3-yl)methyl]-2,3-dihydro-1,4-benzodioxine-5-carboxamide" ZVP "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "7-(7-oxidanylidene-5-piperazin-1-yl-thieno[3,2-b]pyran-3-yl)-~{N}-(pyridin-3-ylmethyl)-2,3-dihydro-1,4-benzodioxine-5-carboxamide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site ZVP "Create component" 2020-06-01 RCSB ZVP "Initial release" 2020-08-05 RCSB ##