data_ZW9 # _chem_comp.id ZW9 _chem_comp.name "Molybdopterin dihydroxy-thioxo-molybdenum" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C10 H14 Mo N5 O8 P S3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge ? _chem_comp.pdbx_initial_date 2026-04-20 _chem_comp.pdbx_modified_date 2026-08-07 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 555.356 _chem_comp.one_letter_code ? _chem_comp.three_letter_code ZW9 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details MetalCoord _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1FIQ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y _chem_comp.pdbx_comp_type "metal-containing ligand" # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal ZW9 N1 N1 N 0 1 N N N N N N 20.785 18.708 100.862 -5.095 1.386 -0.576 N1 ZW9 1 ZW9 C2 C1 C 0 1 N N N N N N 20.189 20.002 100.925 -5.597 2.115 0.424 C2 ZW9 2 ZW9 N2 N2 N 0 1 N N N N N N 19.646 20.484 99.818 -6.914 2.132 0.615 N2 ZW9 3 ZW9 N3 N3 N 0 1 N N N N N N 20.213 20.673 102.118 -4.819 2.858 1.266 N3 ZW9 4 ZW9 C4 C2 C 0 1 N N N N N N 20.783 20.163 103.300 -3.433 2.904 1.157 C4 ZW9 5 ZW9 O4 O1 O 0 1 N Y N N N N 20.809 20.789 104.396 -2.784 3.594 1.937 O4 ZW9 6 ZW9 N5 N4 N 0 1 N N N N N N 22.059 18.060 104.506 -1.515 2.075 -0.155 N5 ZW9 7 ZW9 C6 C3 C 0 1 N N R N N N 23.143 16.979 104.142 -0.939 1.465 -1.355 C6 ZW9 8 ZW9 C7 C4 C 0 1 N N R N N N 22.540 15.993 102.897 -1.847 0.342 -1.943 C7 ZW9 9 ZW9 N8 N5 N 0 1 N N N N N N 21.954 16.730 101.763 -3.268 0.619 -1.768 N8 ZW9 10 ZW9 C9 C5 C 0 1 N N N N N N 21.416 18.805 103.329 -2.882 2.126 0.074 C9 ZW9 11 ZW9 C10 C6 C 0 1 N N N N N N 21.386 18.018 101.864 -3.749 1.371 -0.741 C10 ZW9 12 ZW9 "C1'" C7 C 0 1 N N N N N N 23.587 16.226 105.312 0.486 0.975 -1.082 "C1'" ZW9 13 ZW9 "S1'" S1 S -1 1 N N N N N N 24.721 16.944 106.168 1.643 2.156 -0.812 "S1'" ZW9 14 ZW9 "C2'" C8 C 0 1 N N N N N N 22.914 14.904 105.587 0.824 -0.334 -1.095 "C2'" ZW9 15 ZW9 "S2'" S2 S -1 1 N N N N N N 23.437 14.043 106.963 2.454 -0.738 -0.998 "S2'" ZW9 16 ZW9 "C3'" C9 C 0 1 N N R N N N 21.754 14.325 104.631 -0.225 -1.429 -1.212 "C3'" ZW9 17 ZW9 "O3'" O2 O 0 1 N N N N N N 21.436 15.214 103.493 -1.572 -0.927 -1.323 "O3'" ZW9 18 ZW9 "C4'" C10 C 0 1 N N N N N N 20.466 14.431 105.215 -0.280 -2.375 -0.013 "C4'" ZW9 19 ZW9 "O4'" O3 O 0 1 N N N N N N 19.500 13.401 104.978 -1.106 -3.511 -0.321 "O4'" ZW9 20 ZW9 P P1 P 0 1 N N N N N N 19.021 12.358 104.226 -1.134 -4.792 0.590 P ZW9 21 ZW9 O3P O6 O 0 1 N N N N N N 17.737 12.261 104.031 -1.525 -4.484 1.995 O3P ZW9 22 ZW9 O2P O5 O 0 1 N N N N N N 19.629 11.921 102.985 -2.113 -5.775 -0.086 O2P ZW9 23 ZW9 O1P O4 O 0 1 N N N N N N 19.369 11.391 105.353 0.265 -5.437 0.496 O1P ZW9 24 ZW9 MO MO1 MO ? 0 N N N N N N 24.645 15.383 108.204 3.576 1.097 -0.241 MO ZW9 25 ZW9 S S3 S -2 1 N N N N N N 23.398 16.146 109.517 2.706 0.713 1.953 S ZW9 26 ZW9 O1 O7 O -1 1 N N N N N N 25.339 13.676 109.904 4.950 0.243 0.136 O1 ZW9 27 ZW9 O2 O8 O -1 1 N N N N N N 25.958 16.558 109.028 4.319 2.489 0.279 O2 ZW9 28 ZW9 H1 H1 H 0 1 N N N N N N 19.663 19.944 98.976 -7.442 1.669 0.088 H1 ZW9 29 ZW9 H2 H2 H 0 1 N N N N N N 19.219 21.388 99.823 -7.264 2.604 1.268 H2 ZW9 30 ZW9 H4 H4 H 0 1 N N N N N N 19.800 21.583 102.152 -5.204 3.324 1.906 H4 ZW9 31 ZW9 H3 H3 H 0 1 N N N N N N 22.494 18.741 105.096 -0.990 2.425 0.443 H3 ZW9 32 ZW9 H5 H5 H 0 1 N N N N N N 24.006 17.511 103.716 -0.879 2.167 -2.051 H5 ZW9 33 ZW9 H6 H6 H 0 1 N N N N N N 23.352 15.332 102.560 -1.672 0.266 -2.914 H6 ZW9 34 ZW9 H7 H7 H 0 1 N N N N N N 22.685 16.809 101.085 -3.845 0.290 -2.352 H7 ZW9 35 ZW9 H9 H9 H 0 1 N N N N N N 22.001 13.304 104.306 -0.009 -1.963 -2.022 H9 ZW9 36 ZW9 H10 H10 H 0 1 N N N N N N 20.612 14.489 106.304 -0.643 -1.893 0.762 H10 ZW9 37 ZW9 H11 H11 H 0 1 N N N N N N 20.026 15.372 104.853 0.627 -2.673 0.213 H11 ZW9 38 ZW9 H13 H13 H 0 1 N N N N N N 18.949 11.683 102.366 -2.163 -6.518 0.394 H13 ZW9 39 ZW9 H12 H12 H 0 1 N N N N N N 18.581 10.949 105.647 0.434 -5.654 -0.346 H12 ZW9 40 ZW9 H15 H15 H 0 1 N Y N N N N 24.639 13.553 110.534 4.745 -0.499 0.532 H15 ZW9 41 ZW9 H16 H16 H 0 1 N N N N N N 25.547 17.050 109.729 3.772 2.964 0.754 H16 ZW9 42 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_metal_coordination_flag _chem_comp_bond.pdbx_metal_pi_flag ZW9 N1 C2 DOUB N N 1 N N ZW9 N1 C10 SING N N 2 N N ZW9 C2 N2 SING N N 3 N N ZW9 C2 N3 SING N N 4 N N ZW9 N3 C4 SING N N 5 N N ZW9 C4 C9 SING N N 6 N N ZW9 C4 O4 DOUB N N 7 N N ZW9 N5 C9 SING N N 8 N N ZW9 N5 C6 SING N N 9 N N ZW9 C6 C7 SING N N 10 N N ZW9 C6 "C1'" SING N N 11 N N ZW9 C7 "O3'" SING N N 12 N N ZW9 C7 N8 SING N N 13 N N ZW9 N8 C10 SING N N 14 N N ZW9 C9 C10 DOUB N N 15 N N ZW9 "C1'" "C2'" DOUB N N 16 N N ZW9 "C1'" "S1'" SING N N 17 N N ZW9 "S1'" MO SING N N 18 Y N ZW9 "C2'" "C3'" SING N N 19 N N ZW9 "C2'" "S2'" SING N N 20 N N ZW9 "S2'" MO SING N N 21 Y N ZW9 "C3'" "O3'" SING N N 22 N N ZW9 "C3'" "C4'" SING N N 23 N N ZW9 "C4'" "O4'" SING N N 24 N N ZW9 "O4'" P SING N N 25 N N ZW9 P O3P DOUB N N 26 N N ZW9 P O2P SING N N 27 N N ZW9 P O1P SING N N 28 N N ZW9 MO O1 SING N N 29 Y N ZW9 MO S DOUB N N 30 Y N ZW9 MO O2 SING N N 31 Y N ZW9 N2 H1 SING N N 32 N N ZW9 N2 H2 SING N N 33 N N ZW9 N5 H3 SING N N 34 N N ZW9 C6 H5 SING N N 35 N N ZW9 C7 H6 SING N N 36 N N ZW9 N8 H7 SING N N 37 N N ZW9 "C3'" H9 SING N N 38 N N ZW9 "C4'" H10 SING N N 39 N N ZW9 "C4'" H11 SING N N 40 N N ZW9 O1P H12 SING N N 41 N N ZW9 O2P H13 SING N N 42 N N ZW9 O1 H15 SING N N 43 N N ZW9 O2 H16 SING N N 44 N N ZW9 N3 H4 SING N N 45 N N # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ZW9 SMILES ACDLabs 14.52 "O=P(O)(O)OCC1OC2NC=3N=C(N)NC(=O)C=3NC2C=2S[Mo](O)(O)(=S)SC=21" ZW9 InChI InChI 1.06 "InChI=1S/C10H14N5O6PS2.Mo.2H2O.S/c11-10-14-7-4(8(16)15-10)12-3-6(24)5(23)2(21-9(3)13-7)1-20-22(17,18)19;;;;/h2-3,9,12,23-24H,1H2,(H2,17,18,19)(H4,11,13,14,15,16);;2*1H2;/q;+4;;;/p-4/t2-,3+,9-;;;;/m1..../s1" ZW9 InChIKey InChI 1.06 JAIJTNMSMAOJKF-BKZHXLINSA-J ZW9 SMILES_CANONICAL CACTVS 3.385 "NC1=NC2=C(N[C@@H]3[C@H](N2)O[C@H](CO[P](O)(O)=O)C4=C3S[Mo](O)(O)(=S)S4)C(=O)N1" ZW9 SMILES CACTVS 3.385 "NC1=NC2=C(N[CH]3[CH](N2)O[CH](CO[P](O)(O)=O)C4=C3S[Mo](O)(O)(=S)S4)C(=O)N1" ZW9 SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "C([C@@H]1C2=C([C@H]3[C@@H](O1)NC4=C(N3)C(=O)NC(=N4)N)S[Mo](=S)(S2)(O)O)OP(=O)(O)O" ZW9 SMILES "OpenEye OEToolkits" 3.1.0.0 "C(C1C2=C(C3C(O1)NC4=C(N3)C(=O)NC(=N4)N)S[Mo](=S)(S2)(O)O)OP(=O)(O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ZW9 "SYSTEMATIC NAME" ACDLabs 14.52 "[(5aR,8R,9aR)-2-amino-4-oxo-8-[(phosphonooxy)methyl]-3,5,5a,8,9a,10-hexahydro-4H-pyrano[3,2-g]pteridine-6,7-bis(thiolato)-kappa~2~S~6~,S~7~]dihydroxido(sulfido)molybdenum" ZW9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "[(1~{R},10~{R},16~{R})-5-azanyl-13,13-bis(oxidanyl)-7-oxidanylidene-13-sulfanylidene-17-oxa-12,14-dithia-2,4,6,9-tetraza-13$l^{6}-molybdatetracyclo[8.7.0.0^{3,8}.0^{11,15}]heptadeca-3(8),4,11(15)-trien-16-yl]methyl dihydrogen phosphate" # _pdbx_chem_comp_atom_coordination.geometry_id 1 _pdbx_chem_comp_atom_coordination.comp_id ZW9 _pdbx_chem_comp_atom_coordination.atom_id MO _pdbx_chem_comp_atom_coordination.number 5 _pdbx_chem_comp_atom_coordination.geometry_calculated "square pyramid" _pdbx_chem_comp_atom_coordination.geometry_generic "square pyramidal" _pdbx_chem_comp_atom_coordination.geometry_abbr SPY _pdbx_chem_comp_atom_coordination.provenance FindGeo _pdbx_chem_comp_atom_coordination.representative_entry_id 1FIQ # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id ZW9 _pdbx_chem_comp_pcm.modified_residue_id GLU _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Metal coordination" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom MO _pdbx_chem_comp_pcm.modified_residue_id_linking_atom OE2 _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? _pdbx_chem_comp_pcm.position "Amino-acid side chain" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site ZW9 "Create component" 2026-04-20 RCSB ZW9 "Other modification" 2026-07-31 RCSB ZW9 "Initial release" 2026-08-12 RCSB #