data_ZX3 # _chem_comp.id ZX3 _chem_comp.name "3^3-ethyl-5^4-morpholino-6,9-dioxa-2,4-diaza-3(2,6)-pyrazina-1(4,1)-piperidina-5(1,3)-benzenacycloundecaphane-3^5-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C26 H37 N7 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-12-13 _chem_comp.pdbx_modified_date 2024-12-06 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 511.616 _chem_comp.one_letter_code ? _chem_comp.three_letter_code ZX3 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8XB1 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal ZX3 C1 C1 C 0 1 Y N N N N N -29.137 -3.991 -28.391 2.283 3.176 -0.024 C1 ZX3 1 ZX3 C10 C2 C 0 1 Y N N N N N -28.913 -9.820 -29.624 -3.068 2.136 -0.112 C10 ZX3 2 ZX3 C11 C3 C 0 1 Y N N N N N -29.458 -10.510 -28.557 -3.358 0.784 -0.192 C11 ZX3 3 ZX3 C12 C4 C 0 1 Y N N N N N -30.199 -9.805 -27.580 -2.361 -0.117 -0.568 C12 ZX3 4 ZX3 C13 C5 C 0 1 Y N N N N N -30.374 -8.420 -27.708 -1.086 0.354 -0.853 C13 ZX3 5 ZX3 C14 C6 C 0 1 N N N N N N -30.322 -12.929 -28.178 -4.992 0.582 1.510 C14 ZX3 6 ZX3 C15 C7 C 0 1 N N N N N N -29.936 -14.396 -28.477 -6.380 0.011 1.807 C15 ZX3 7 ZX3 C16 C8 C 0 1 N N N N N N -27.823 -13.982 -29.237 -7.028 0.350 -0.474 C16 ZX3 8 ZX3 C17 C9 C 0 1 N N N N N N -27.856 -12.488 -28.799 -5.644 0.926 -0.794 C17 ZX3 9 ZX3 C18 C10 C 0 1 N N N N N N -28.778 -5.731 -23.567 2.899 -1.630 0.135 C18 ZX3 10 ZX3 C19 C11 C 0 1 N N N N N N -28.570 -7.045 -24.301 2.774 -2.413 1.438 C19 ZX3 11 ZX3 C2 C12 C 0 1 Y N N N N N -29.634 -5.247 -27.967 1.571 2.049 -0.479 C2 ZX3 12 ZX3 C20 C13 C 0 1 N N N N N N -28.133 -8.151 -23.379 1.864 -3.623 1.235 C20 ZX3 13 ZX3 C21 C14 C 0 1 N N N N N N -28.945 -7.375 -21.547 2.454 -3.751 -1.110 C21 ZX3 14 ZX3 C22 C15 C 0 1 N N N N N N -29.406 -5.980 -22.174 3.386 -2.546 -0.981 C22 ZX3 15 ZX3 C23 C16 C 0 1 N N N N N N -28.772 -9.526 -21.882 1.586 -5.696 0.027 C23 ZX3 16 ZX3 C24 C17 C 0 1 N N N N N N -30.075 -10.364 -21.762 0.194 -5.295 -0.472 C24 ZX3 17 ZX3 C25 C18 C 0 1 N N N N N N -30.670 -10.773 -24.059 -1.079 -3.282 -0.751 C25 ZX3 18 ZX3 C26 C19 C 0 1 N N N N N N -30.777 -9.776 -25.248 -1.901 -2.346 0.137 C26 ZX3 19 ZX3 C3 C20 C 0 1 Y N N N N N -29.480 -4.559 -25.770 3.308 0.721 0.227 C3 ZX3 20 ZX3 C4 C21 C 0 1 Y N N N N N -28.986 -3.308 -26.188 4.026 1.843 0.629 C4 ZX3 21 ZX3 C5 C22 C 0 1 N N N N N N -28.622 -2.222 -25.151 5.412 1.687 1.201 C5 ZX3 22 ZX3 C6 C23 C 0 1 N N N N N N -29.235 -0.872 -25.561 6.440 1.750 0.070 C6 ZX3 23 ZX3 C7 C24 C 0 1 N N N N N N -28.948 -3.700 -29.895 1.678 4.516 -0.134 C7 ZX3 24 ZX3 C8 C25 C 0 1 Y N N N N N -29.812 -7.733 -28.789 -0.820 1.704 -0.823 C8 ZX3 25 ZX3 C9 C26 C 0 1 Y N N N N N -29.092 -8.439 -29.748 -1.816 2.607 -0.439 C9 ZX3 26 ZX3 N1 N1 N 0 1 Y N N N N N -29.798 -5.490 -26.669 2.099 0.836 -0.293 N1 ZX3 27 ZX3 N2 N2 N 0 1 Y N N N N N -28.833 -3.060 -27.487 3.495 3.041 0.509 N2 ZX3 28 ZX3 N3 N3 N 0 1 N N N N N N -29.668 -4.842 -24.325 3.934 -0.558 0.351 N3 ZX3 29 ZX3 N4 N4 N 0 1 N N N N N N -28.889 -2.319 -30.373 2.355 5.598 0.299 N4 ZX3 30 ZX3 N5 N5 N 0 1 N N N N N N -29.979 -6.269 -28.977 0.412 2.253 -1.192 N5 ZX3 31 ZX3 N6 N6 N 0 1 N N N N N N -29.221 -11.999 -28.501 -4.649 0.322 0.105 N6 ZX3 32 ZX3 N7 N7 N 0 1 N N N N N N -29.010 -8.358 -22.455 2.399 -4.474 0.163 N7 ZX3 33 ZX3 O1 O1 O 0 1 N N N N N N -28.842 -4.590 -30.662 0.569 4.645 -0.616 O1 ZX3 34 ZX3 O2 O2 O 0 1 N N N N N N -29.089 -14.463 -29.588 -7.329 0.585 0.904 O2 ZX3 35 ZX3 O3 O3 O 0 1 N N N N N N -30.959 -10.079 -22.839 -0.135 -4.002 0.046 O3 ZX3 36 ZX3 O4 O4 O 0 1 N N N N N N -30.771 -10.494 -26.470 -2.647 -1.440 -0.673 O4 ZX3 37 ZX3 H1 H1 H 0 1 N N N N N N -28.343 -10.354 -30.370 -3.832 2.828 0.208 H1 ZX3 38 ZX3 H2 H2 H 0 1 N N N N N N -30.946 -7.880 -26.968 -0.298 -0.343 -1.100 H2 ZX3 39 ZX3 H3 H3 H 0 1 N N N N N N -30.566 -12.835 -27.110 -4.994 1.657 1.691 H3 ZX3 40 ZX3 H4 H4 H 0 1 N N N N N N -31.203 -12.662 -28.780 -4.256 0.106 2.158 H4 ZX3 41 ZX3 H5 H5 H 0 1 N N N N N N -30.848 -14.976 -28.682 -6.364 -1.072 1.677 H5 ZX3 42 ZX3 H6 H6 H 0 1 N N N N N N -29.420 -14.820 -27.603 -6.662 0.250 2.832 H6 ZX3 43 ZX3 H7 H7 H 0 1 N N N N N N -27.434 -14.586 -28.404 -7.777 0.836 -1.099 H7 ZX3 44 ZX3 H8 H8 H 0 1 N N N N N N -27.154 -14.081 -30.105 -7.030 -0.722 -0.670 H8 ZX3 45 ZX3 H9 H9 H 0 1 N N N N N N -27.239 -12.375 -27.896 -5.385 0.698 -1.829 H9 ZX3 46 ZX3 H10 H10 H 0 1 N N N N N N -27.435 -11.876 -29.610 -5.656 2.006 -0.650 H10 ZX3 47 ZX3 H11 H11 H 0 1 N N N N N N -27.802 -5.243 -23.428 1.974 -1.147 -0.127 H11 ZX3 48 ZX3 H12 H12 H 0 1 N N N N N N -29.517 -7.337 -24.780 3.762 -2.752 1.752 H12 ZX3 49 ZX3 H13 H13 H 0 1 N N N N N N -27.798 -6.901 -25.072 2.353 -1.768 2.209 H13 ZX3 50 ZX3 H14 H14 H 0 1 N N N N N N -28.001 -9.074 -23.962 1.811 -4.196 2.161 H14 ZX3 51 ZX3 H15 H15 H 0 1 N N N N N N -27.177 -7.873 -22.911 0.865 -3.283 0.963 H15 ZX3 52 ZX3 H16 H16 H 0 1 N N N N N N -29.603 -7.623 -20.701 1.454 -3.408 -1.376 H16 ZX3 53 ZX3 H17 H17 H 0 1 N N N N N N -27.908 -7.283 -21.191 2.828 -4.416 -1.888 H17 ZX3 54 ZX3 H18 H18 H 0 1 N N N N N N -29.100 -5.169 -21.497 3.399 -1.995 -1.922 H18 ZX3 55 ZX3 H19 H19 H 0 1 N N N N N N -30.501 -5.981 -22.274 4.395 -2.891 -0.752 H19 ZX3 56 ZX3 H20 H20 H 0 1 N N N N N N -28.042 -10.082 -22.488 1.502 -6.191 0.994 H20 ZX3 57 ZX3 H21 H21 H 0 1 N N N N N N -28.360 -9.356 -20.876 2.054 -6.370 -0.691 H21 ZX3 58 ZX3 H22 H22 H 0 1 N N N N N N -30.574 -10.121 -20.812 0.193 -5.262 -1.561 H22 ZX3 59 ZX3 H23 H23 H 0 1 N N N N N N -29.819 -11.434 -21.779 -0.540 -6.024 -0.129 H23 ZX3 60 ZX3 H24 H24 H 0 1 N N N N N N -31.392 -11.591 -24.198 -1.745 -3.986 -1.250 H24 ZX3 61 ZX3 H25 H25 H 0 1 N N N N N N -29.652 -11.187 -24.015 -0.547 -2.694 -1.500 H25 ZX3 62 ZX3 H26 H26 H 0 1 N N N N N N -29.922 -9.085 -25.225 -2.585 -2.935 0.747 H26 ZX3 63 ZX3 H27 H27 H 0 1 N N N N N N -31.713 -9.204 -25.164 -1.231 -1.782 0.786 H27 ZX3 64 ZX3 H28 H28 H 0 1 N N N N N N -29.013 -2.515 -24.165 5.604 2.490 1.912 H28 ZX3 65 ZX3 H29 H29 H 0 1 N N N N N N -27.528 -2.123 -25.097 5.489 0.725 1.709 H29 ZX3 66 ZX3 H30 H30 H 0 1 N N N N N N -28.970 -0.107 -24.816 6.364 2.711 -0.438 H30 ZX3 67 ZX3 H31 H31 H 0 1 N N N N N N -28.844 -0.576 -26.546 7.443 1.637 0.484 H31 ZX3 68 ZX3 H32 H32 H 0 1 N N N N N N -30.330 -0.968 -25.614 6.248 0.947 -0.641 H32 ZX3 69 ZX3 H33 H33 H 0 1 N N N N N N -28.669 -7.917 -30.593 -1.604 3.666 -0.398 H33 ZX3 70 ZX3 H34 H34 H 0 1 N N N N N N -29.633 -3.956 -23.863 4.872 -0.710 0.543 H34 ZX3 71 ZX3 H35 H35 H 0 1 N N N N N N -28.759 -2.132 -31.347 3.239 5.495 0.684 H35 ZX3 72 ZX3 H36 H36 H 0 1 N N N N N N -28.978 -1.562 -29.726 1.957 6.480 0.227 H36 ZX3 73 ZX3 H37 H37 H 0 1 N N N N N N -30.352 -5.952 -29.849 0.451 2.804 -1.990 H37 ZX3 74 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ZX3 O1 C7 DOUB N N 1 ZX3 N4 C7 SING N N 2 ZX3 C7 C1 SING N N 3 ZX3 C9 C10 DOUB Y N 4 ZX3 C9 C8 SING Y N 5 ZX3 C10 C11 SING Y N 6 ZX3 O2 C16 SING N N 7 ZX3 O2 C15 SING N N 8 ZX3 C16 C17 SING N N 9 ZX3 N5 C8 SING N N 10 ZX3 N5 C2 SING N N 11 ZX3 C17 N6 SING N N 12 ZX3 C8 C13 DOUB Y N 13 ZX3 C11 N6 SING N N 14 ZX3 C11 C12 DOUB Y N 15 ZX3 N6 C14 SING N N 16 ZX3 C15 C14 SING N N 17 ZX3 C1 C2 DOUB Y N 18 ZX3 C1 N2 SING Y N 19 ZX3 C2 N1 SING Y N 20 ZX3 C13 C12 SING Y N 21 ZX3 C12 O4 SING N N 22 ZX3 N2 C4 DOUB Y N 23 ZX3 N1 C3 DOUB Y N 24 ZX3 O4 C26 SING N N 25 ZX3 C4 C3 SING Y N 26 ZX3 C4 C5 SING N N 27 ZX3 C3 N3 SING N N 28 ZX3 C6 C5 SING N N 29 ZX3 C26 C25 SING N N 30 ZX3 N3 C18 SING N N 31 ZX3 C19 C18 SING N N 32 ZX3 C19 C20 SING N N 33 ZX3 C25 O3 SING N N 34 ZX3 C18 C22 SING N N 35 ZX3 C20 N7 SING N N 36 ZX3 O3 C24 SING N N 37 ZX3 N7 C23 SING N N 38 ZX3 N7 C21 SING N N 39 ZX3 C22 C21 SING N N 40 ZX3 C23 C24 SING N N 41 ZX3 C10 H1 SING N N 42 ZX3 C13 H2 SING N N 43 ZX3 C14 H3 SING N N 44 ZX3 C14 H4 SING N N 45 ZX3 C15 H5 SING N N 46 ZX3 C15 H6 SING N N 47 ZX3 C16 H7 SING N N 48 ZX3 C16 H8 SING N N 49 ZX3 C17 H9 SING N N 50 ZX3 C17 H10 SING N N 51 ZX3 C18 H11 SING N N 52 ZX3 C19 H12 SING N N 53 ZX3 C19 H13 SING N N 54 ZX3 C20 H14 SING N N 55 ZX3 C20 H15 SING N N 56 ZX3 C21 H16 SING N N 57 ZX3 C21 H17 SING N N 58 ZX3 C22 H18 SING N N 59 ZX3 C22 H19 SING N N 60 ZX3 C23 H20 SING N N 61 ZX3 C23 H21 SING N N 62 ZX3 C24 H22 SING N N 63 ZX3 C24 H23 SING N N 64 ZX3 C25 H24 SING N N 65 ZX3 C25 H25 SING N N 66 ZX3 C26 H26 SING N N 67 ZX3 C26 H27 SING N N 68 ZX3 C5 H28 SING N N 69 ZX3 C5 H29 SING N N 70 ZX3 C6 H30 SING N N 71 ZX3 C6 H31 SING N N 72 ZX3 C6 H32 SING N N 73 ZX3 C9 H33 SING N N 74 ZX3 N3 H34 SING N N 75 ZX3 N4 H35 SING N N 76 ZX3 N4 H36 SING N N 77 ZX3 N5 H37 SING N N 78 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ZX3 InChI InChI 1.06 "InChI=1S/C26H37N7O4/c1-2-20-25-28-18-5-7-32(8-6-18)9-12-36-15-16-37-22-17-19(29-26(31-25)23(30-20)24(27)34)3-4-21(22)33-10-13-35-14-11-33/h3-4,17-18H,2,5-16H2,1H3,(H2,27,34)(H2,28,29,31)" ZX3 InChIKey InChI 1.06 LXUHFRDECMQRJE-UHFFFAOYSA-N ZX3 SMILES_CANONICAL CACTVS 3.385 "CCc1nc(C(N)=O)c2Nc3ccc(N4CCOCC4)c(OCCOCCN5CCC(CC5)Nc1n2)c3" ZX3 SMILES CACTVS 3.385 "CCc1nc(C(N)=O)c2Nc3ccc(N4CCOCC4)c(OCCOCCN5CCC(CC5)Nc1n2)c3" ZX3 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCc1c2nc(c(n1)C(=O)N)Nc3ccc(c(c3)OCCOCCN4CCC(N2)CC4)N5CCOCC5" ZX3 SMILES "OpenEye OEToolkits" 2.0.7 "CCc1c2nc(c(n1)C(=O)N)Nc3ccc(c(c3)OCCOCCN4CCC(N2)CC4)N5CCOCC5" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site ZX3 "Create component" 2023-12-13 PDBJ ZX3 "Initial release" 2024-12-11 RCSB #