data_ZXF # _chem_comp.id ZXF _chem_comp.name "Molybdopterin hydoxy-oxo-thiol-molybdenum" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C10 H14 Mo N5 O8 P S3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge ? _chem_comp.pdbx_initial_date 2026-04-20 _chem_comp.pdbx_modified_date 2026-08-07 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 555.356 _chem_comp.one_letter_code ? _chem_comp.three_letter_code ZXF _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details MetalCoord _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1V97 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? _chem_comp.pdbx_comp_type "metal-containing ligand" # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal ZXF N1 N1 N 0 1 N N N N N N 146.247 42.860 24.550 -4.857 2.040 -1.046 N1 ZXF 1 ZXF C2 C1 C 0 1 N N N N N N 144.999 42.245 24.543 -5.531 2.708 -0.106 C2 ZXF 2 ZXF N2 N2 N 0 1 N N N N N N 144.542 41.832 23.347 -6.839 2.898 -0.258 N2 ZXF 3 ZXF N3 N3 N 0 1 N N N N N N 144.329 42.092 25.704 -4.936 3.219 1.014 N3 ZXF 4 ZXF C4 C2 C 0 1 N N N N N N 144.821 42.521 26.928 -3.578 3.071 1.272 C4 ZXF 5 ZXF O4 O1 O 0 1 N N N N N N 144.195 42.393 28.069 -3.096 3.557 2.290 O4 ZXF 6 ZXF N5 N4 N 0 1 N N N N N N 146.765 43.815 28.285 -1.476 2.131 0.379 N5 ZXF 7 ZXF C6 C3 C 0 1 N N R N N N 147.836 44.770 28.134 -0.667 1.612 -0.726 C6 ZXF 8 ZXF C7 C4 C 0 1 N N R N N N 148.817 44.369 26.827 -1.497 0.696 -1.676 C7 ZXF 9 ZXF N8 N5 N 0 1 N N N N N N 148.167 43.939 25.615 -2.869 1.161 -1.835 N8 ZXF 10 ZXF C9 C5 C 0 1 N N N N N N 146.132 43.172 27.023 -2.839 2.359 0.257 C9 ZXF 11 ZXF C10 C6 C 0 1 N N N N N N 146.917 43.345 25.625 -3.528 1.845 -0.860 C10 ZXF 12 ZXF "C1'" C7 C 0 1 N N N N N N 148.600 45.102 29.284 0.592 0.908 -0.214 "C1'" ZXF 13 ZXF "S1'" S1 S -1 1 N N N N N N 147.944 46.238 30.277 1.795 1.885 0.421 "S1'" ZXF 14 ZXF "C2'" C8 C 0 1 N N N N N N 149.870 44.386 29.459 0.766 -0.430 -0.304 "C2'" ZXF 15 ZXF "S2'" S2 S -1 1 N N N N N N 150.772 44.818 30.863 2.266 -1.075 0.096 "S2'" ZXF 16 ZXF "C3'" C9 C 0 1 N N R N N N 150.402 43.292 28.444 -0.347 -1.350 -0.780 "C3'" ZXF 17 ZXF "O3'" O2 O 0 1 N N N N N N 149.609 43.229 27.238 -1.545 -0.654 -1.182 "O3'" ZXF 18 ZXF "C4'" C10 C 0 1 N N N N N N 150.623 42.026 29.208 -0.825 -2.344 0.278 "C4'" ZXF 19 ZXF "O4'" O3 O 0 1 N N N N N N 151.190 41.106 28.384 -1.687 -3.323 -0.330 "O4'" ZXF 20 ZXF P P1 P 0 1 N N N N N N 152.527 40.883 28.068 -2.052 -4.677 0.381 P ZXF 21 ZXF O3P O6 O 0 1 N N N N N N 152.706 39.585 27.709 -2.695 -4.467 1.709 O3P ZXF 22 ZXF O2P O5 O 0 1 N N N N N N 152.943 41.699 26.931 -2.969 -5.437 -0.600 O2P ZXF 23 ZXF O1P O4 O 0 1 N N N N N N 153.386 41.158 29.314 -0.747 -5.494 0.480 O1P ZXF 24 ZXF MO MO1 MO ? 0 N N N N N N 149.192 45.869 32.324 3.703 0.656 0.417 MO ZXF 25 ZXF S S3 S -1 1 N N N N N N 148.471 48.052 33.055 5.092 2.548 0.753 S ZXF 26 ZXF O1 O7 O -1 1 N Y N N N N 150.735 46.164 33.669 5.043 -0.323 0.398 O1 ZXF 27 ZXF O2 O8 O -2 1 N N N N N N 148.454 44.770 33.385 3.578 0.455 2.060 O2 ZXF 28 ZXF H1 H1 H 0 1 N N N N N N 145.093 41.974 22.525 -7.250 2.586 -0.969 H1 ZXF 29 ZXF H2 H2 H 0 1 N N N N N N 143.651 41.383 23.280 -7.300 3.333 0.349 H2 ZXF 30 ZXF H14 H14 H 0 1 N N N N N N 143.434 41.647 25.681 -5.429 3.656 1.598 H14 ZXF 31 ZXF H15 H15 H 0 1 N N N N N N 146.028 44.280 28.776 -1.098 2.309 1.142 H15 ZXF 32 ZXF H3 H3 H 0 1 N N N N N N 147.355 45.706 27.812 -0.371 2.384 -1.272 H3 ZXF 33 ZXF H4 H4 H 0 1 N N N N N N 149.467 45.233 26.627 -1.073 0.694 -2.570 H4 ZXF 34 ZXF H5 H5 H 0 1 N N N N N N 148.087 44.751 25.037 -3.294 0.997 -2.593 H5 ZXF 35 ZXF H6 H6 H 0 1 N N N N N N 151.401 43.643 28.144 0.004 -1.865 -1.554 H6 ZXF 36 ZXF H7 H7 H 0 1 N N N N N N 151.292 42.221 30.059 -1.308 -1.859 0.982 H7 ZXF 37 ZXF H8 H8 H 0 1 N N N N N N 149.660 41.646 29.578 -0.051 -2.786 0.687 H8 ZXF 38 ZXF H10 H10 H 0 1 N N N N N N 153.234 41.134 26.225 -3.203 -6.214 -0.243 H10 ZXF 39 ZXF H9 H9 H 0 1 N N N N N N 153.851 40.367 29.559 -0.428 -5.641 -0.333 H9 ZXF 40 ZXF H11 H11 H 0 1 N N N N N N 149.031 48.144 34.224 4.421 3.568 0.658 H11 ZXF 41 ZXF H12 H12 H 0 1 N Y N N N N 150.589 45.630 34.441 5.008 -0.850 -0.288 H12 ZXF 42 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_metal_coordination_flag _chem_comp_bond.pdbx_metal_pi_flag ZXF N1 C2 DOUB N N 1 N N ZXF N1 C10 SING N N 2 N N ZXF C2 N2 SING N N 3 N N ZXF C2 N3 SING N N 4 N N ZXF N3 C4 SING N N 5 N N ZXF C4 C9 SING N N 6 N N ZXF C4 O4 DOUB N N 7 N N ZXF N5 C9 SING N N 8 N N ZXF N5 C6 SING N N 9 N N ZXF C6 C7 SING N N 10 N N ZXF C6 "C1'" SING N N 11 N N ZXF C7 N8 SING N N 12 N N ZXF C7 "O3'" SING N N 13 N N ZXF N8 C10 SING N N 14 N N ZXF C9 C10 DOUB N N 15 N N ZXF "C1'" "S1'" SING N N 16 N N ZXF "C1'" "C2'" DOUB N N 17 N N ZXF "S1'" MO SING N N 18 Y N ZXF "C2'" "C3'" SING N N 19 N N ZXF "C2'" "S2'" SING N N 20 N N ZXF "S2'" MO SING N N 21 Y N ZXF "C3'" "O3'" SING N N 22 N N ZXF "C3'" "C4'" SING N N 23 N N ZXF "C4'" "O4'" SING N N 24 N N ZXF "O4'" P SING N N 25 N N ZXF P O3P DOUB N N 26 N N ZXF P O2P SING N N 27 N N ZXF P O1P SING N N 28 N N ZXF MO O2 DOUB N N 29 Y N ZXF MO O1 SING N N 30 Y N ZXF MO S SING N N 31 Y N ZXF N2 H1 SING N N 32 N N ZXF N2 H2 SING N N 33 N N ZXF C6 H3 SING N N 34 N N ZXF C7 H4 SING N N 35 N N ZXF N8 H5 SING N N 36 N N ZXF "C3'" H6 SING N N 37 N N ZXF "C4'" H7 SING N N 38 N N ZXF "C4'" H8 SING N N 39 N N ZXF O1P H9 SING N N 40 N N ZXF O2P H10 SING N N 41 N N ZXF S H11 SING N N 42 N N ZXF O1 H12 SING N N 43 N N ZXF N3 H14 SING N N 44 N N ZXF N5 H15 SING N N 45 N N # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ZXF SMILES ACDLabs 14.52 "O=P(O)(O)OCC1OC2NC=3N=C(N)NC(=O)C=3NC2C=2S[Mo](O)(=O)(S)SC=21" ZXF InChI InChI 1.06 "InChI=1S/C10H14N5O6PS2.Mo.H2O.O.H2S/c11-10-14-7-4(8(16)15-10)12-3-6(24)5(23)2(21-9(3)13-7)1-20-22(17,18)19;;;;/h2-3,9,12,23-24H,1H2,(H2,17,18,19)(H4,11,13,14,15,16);;1H2;;1H2/q;+4;;;/p-4/t2-,3+,9-;;;;/m1..../s1" ZXF InChIKey InChI 1.06 KIFQXVGEKPMGCB-BKZHXLINSA-J ZXF SMILES_CANONICAL CACTVS 3.385 "NC1=NC2=C(N[C@@H]3[C@H](N2)O[C@H](CO[P](O)(O)=O)C4=C3S[Mo](O)(S)(=O)S4)C(=O)N1" ZXF SMILES CACTVS 3.385 "NC1=NC2=C(N[CH]3[CH](N2)O[CH](CO[P](O)(O)=O)C4=C3S[Mo](O)(S)(=O)S4)C(=O)N1" ZXF SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "C([C@@H]1C2=C([C@H]3[C@@H](O1)NC4=C(N3)C(=O)NC(=N4)N)S[Mo](=O)(S2)(O)S)OP(=O)(O)O" ZXF SMILES "OpenEye OEToolkits" 3.1.0.0 "C(C1C2=C(C3C(O1)NC4=C(N3)C(=O)NC(=N4)N)S[Mo](=O)(S2)(O)S)OP(=O)(O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ZXF "SYSTEMATIC NAME" ACDLabs 14.52 "[(5aR,8R,9aR)-2-amino-4-oxo-8-[(phosphonooxy)methyl]-3,5,5a,8,9a,10-hexahydro-4H-pyrano[3,2-g]pteridine-6,7-bis(thiolato)-kappa~2~S~6~,S~7~](hydrosulfido)hydroxido(oxido)molybdenum" ZXF "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "[(1~{R},10~{R},16~{R})-5-azanyl-13-oxidanyl-7,13-bis(oxidanylidene)-13-sulfanyl-17-oxa-12,14-dithia-2,4,6,9-tetraza-13$l^{6}-molybdatetracyclo[8.7.0.0^{3,8}.0^{11,15}]heptadeca-3(8),4,11(15)-trien-16-yl]methyl dihydrogen phosphate" # _pdbx_chem_comp_atom_coordination.geometry_id 1 _pdbx_chem_comp_atom_coordination.comp_id ZXF _pdbx_chem_comp_atom_coordination.atom_id MO _pdbx_chem_comp_atom_coordination.number 5 _pdbx_chem_comp_atom_coordination.geometry_calculated square-pyramid _pdbx_chem_comp_atom_coordination.geometry_generic "square pyramidal" _pdbx_chem_comp_atom_coordination.geometry_abbr SQP _pdbx_chem_comp_atom_coordination.provenance MetalCoord _pdbx_chem_comp_atom_coordination.representative_entry_id 1V97 # _pdbx_chem_comp_atom_coordination_sphere.id 1 _pdbx_chem_comp_atom_coordination_sphere.geometry_id 1 _pdbx_chem_comp_atom_coordination_sphere.comp_id ZXF _pdbx_chem_comp_atom_coordination_sphere.atom_id MO _pdbx_chem_comp_atom_coordination_sphere.descriptor "@SQP{Mo,O,S,S,S,O}" _pdbx_chem_comp_atom_coordination_sphere.provenance MetalCoord _pdbx_chem_comp_atom_coordination_sphere.representative_entry_id 1V97 # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site ZXF "Create component" 2026-04-20 RCSB ZXF "Other modification" 2026-07-31 RCSB ZXF "Initial release" 2026-08-12 RCSB #