data_ZXO # _chem_comp.id ZXO _chem_comp.name "aquabis(carbonyl-kappaC)ruthenium(2+)" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C2 H2 O3 Ru" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge ? _chem_comp.pdbx_initial_date 2026-04-20 _chem_comp.pdbx_modified_date 2026-08-07 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 175.105 _chem_comp.one_letter_code ? _chem_comp.three_letter_code ? _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details MetalCoord _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3WVW _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y _chem_comp.pdbx_comp_type "metal-containing ligand" # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal ZXO O1 O1 O 1 1 N N N N N N 16.932 -7.906 36.087 -2.482 -0.009 0.162 O1 ZXO 1 ZXO C1 C1 C -1 1 N N N N N N 17.615 -7.418 36.960 -1.451 -0.107 -0.483 C1 ZXO 2 ZXO RU RU1 RU ? 0 N N N N N N 18.633 -6.483 38.355 -0.032 -0.243 -1.371 RU ZXO 3 ZXO C2 C2 C -1 1 N N N N N N 17.765 -7.537 39.843 0.324 -1.683 -0.582 C2 ZXO 4 ZXO O2 O2 O 1 1 N N N N N N 17.253 -8.044 40.726 0.582 -2.728 -0.009 O2 ZXO 5 ZXO O3 O3 O 0 1 N N N N N N 21.005 -7.600 37.622 0.975 0.795 0.070 O3 ZXO 6 ZXO H1 H1 H 0 1 N N N N N N ? ? ? 0.513 1.486 0.304 H1 ZXO 7 ZXO H2 H2 H 0 1 N N N N N N ? ? ? 1.723 1.081 -0.251 H2 ZXO 8 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_metal_coordination_flag _chem_comp_bond.pdbx_metal_pi_flag ZXO O1 C1 TRIP N N 1 N N ZXO C1 RU SING N N 2 Y N ZXO RU C2 SING N N 3 Y N ZXO C2 O2 TRIP N N 4 N N ZXO RU O3 SING N N 5 Y N ZXO O3 H1 SING N N 6 N N ZXO O3 H2 SING N N 7 N N # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ZXO SMILES ACDLabs 14.52 "[O+]#C[Ru]([OH2])C#[O+]" ZXO InChI InChI 1.06 InChI=1S/2CO.H2O.Ru/c2*1-2;;/h;;1H2;/q2*+1;; ZXO InChIKey InChI 1.06 NBWJEQOXJSVJLY-UHFFFAOYSA-N ZXO SMILES_CANONICAL CACTVS 3.385 "O.[O+]#C[Ru]C#[O+]" ZXO SMILES CACTVS 3.385 "O.[O+]#C[Ru]C#[O+]" ZXO SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "C(#[O+])[Ru](C#[O+])[OH2]" ZXO SMILES "OpenEye OEToolkits" 3.1.0.0 "C(#[O+])[Ru](C#[O+])[OH2]" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ZXO "SYSTEMATIC NAME" ACDLabs 14.52 "aquabis(carbonyl-kappaC)ruthenium(2+)" ZXO "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "$l^{3}-oxidanyl-bis(oxidaniumylidynemethyl)ruthenium" # _pdbx_chem_comp_atom_coordination.geometry_id 1 _pdbx_chem_comp_atom_coordination.comp_id ZXO _pdbx_chem_comp_atom_coordination.atom_id RU _pdbx_chem_comp_atom_coordination.number 5 _pdbx_chem_comp_atom_coordination.geometry_calculated "square pyramid" _pdbx_chem_comp_atom_coordination.geometry_generic "square pyramidal" _pdbx_chem_comp_atom_coordination.geometry_abbr SPY _pdbx_chem_comp_atom_coordination.provenance FindGeo _pdbx_chem_comp_atom_coordination.representative_entry_id 3WVW # loop_ _pdbx_chem_comp_pcm.pcm_id _pdbx_chem_comp_pcm.comp_id _pdbx_chem_comp_pcm.modified_residue_id _pdbx_chem_comp_pcm.type _pdbx_chem_comp_pcm.category _pdbx_chem_comp_pcm.polypeptide_position _pdbx_chem_comp_pcm.comp_id_linking_atom _pdbx_chem_comp_pcm.modified_residue_id_linking_atom _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession _pdbx_chem_comp_pcm.position 1 ZXO CYS None "Metal coordination" "Any position" RU SG ? ? "Amino-acid side chain" 2 ZXO GLU None "Metal coordination" "Any position" RU OE1 ? ? "Amino-acid side chain" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site ZXO "Create component" 2026-04-20 RCSB ZXO "Modify subcomponent list" 2026-06-15 RCSB ZXO "Other modification" 2026-07-31 RCSB ZXO "Initial release" 2026-08-12 RCSB #