data_ZZC # _chem_comp.id ZZC _chem_comp.name "[(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY-OXOLAN-2-YL]METHYL [[(2R,3R)-2,3-DIHYDROXY-4-OXO-PENTOXY]-OXIDO-PHOSPHORYL] PHOSPHATE" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C15 H21 N5 O13 P2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -2 _chem_comp.pdbx_initial_date 2009-07-23 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 541.300 _chem_comp.one_letter_code ? _chem_comp.three_letter_code ZZC _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal ZZC N1 N1 N 0 1 Y N N N N N 27.792 -9.002 -17.998 -8.043 3.096 0.369 N1 ZZC 1 ZZC C2 C2 C 0 1 Y N N N N N 28.331 -8.707 -19.203 -7.868 2.206 1.329 C2 ZZC 2 ZZC N3 N3 N 0 1 Y N N N N N 29.612 -8.997 -19.528 -6.852 1.370 1.340 N3 ZZC 3 ZZC C4 C4 C 0 1 Y N N N N N 30.437 -9.593 -18.651 -5.946 1.391 0.367 C4 ZZC 4 ZZC C5 C5 C 0 1 Y N N N N N 29.933 -9.950 -17.325 -6.088 2.320 -0.678 C5 ZZC 5 ZZC C6 C6 C 0 1 Y N N N N N 28.522 -9.626 -17.036 -7.190 3.192 -0.646 C6 ZZC 6 ZZC N6 N6 N 0 1 N N N N N N 28.014 -9.935 -15.834 -7.382 4.127 -1.647 N6 ZZC 7 ZZC N7 N7 N 0 1 Y N N N N N 30.939 -10.532 -16.670 -5.047 2.132 -1.524 N7 ZZC 8 ZZC C8 C8 C 0 1 Y N N N N N 32.012 -10.538 -17.504 -4.294 1.170 -1.076 C8 ZZC 9 ZZC N9 N9 N 0 1 Y N N N N N 31.698 -9.985 -18.691 -4.806 0.680 0.089 N9 ZZC 10 ZZC PA PA P 0 1 N N N N N N 37.057 -11.701 -18.306 1.045 -2.224 -0.735 PA ZZC 11 ZZC PB PB P 0 1 N N N N N N 37.865 -14.450 -18.401 3.542 -0.703 -1.222 PB ZZC 12 ZZC "C1'A" "C1'A" C 0 0 N N N N N N 41.771 -13.238 -22.563 9.302 1.410 2.417 "C1'A" ZZC 13 ZZC "C2'A" "C2'A" C 0 0 N N N N N N 40.421 -13.723 -22.115 8.588 2.273 1.409 "C2'A" ZZC 14 ZZC "C3'A" "C3'A" C 0 0 N N R N N N 40.153 -15.202 -22.036 7.912 1.640 0.220 "C3'A" ZZC 15 ZZC "C4'A" "C4'A" C 0 0 N N R N N N 38.662 -15.552 -22.062 6.554 1.079 0.645 "C4'A" ZZC 16 ZZC "C5'A" "C5'A" C 0 0 N N N N N N 37.814 -14.911 -20.972 5.868 0.436 -0.562 "C5'A" ZZC 17 ZZC "O2'A" "O2'A" O 0 0 N N N N N N 39.534 -12.936 -21.812 8.557 3.472 1.554 "O2'A" ZZC 18 ZZC "O3'A" "O3'A" O 0 0 N N N N N N 40.727 -15.818 -23.180 7.723 2.624 -0.799 "O3'A" ZZC 19 ZZC "O4'A" "O4'A" O 0 0 N N N N N N 38.104 -15.174 -23.311 6.743 0.095 1.664 "O4'A" ZZC 20 ZZC "O5'A" "O5'A" O 0 0 N N N N N N 38.545 -14.937 -19.761 4.552 0.016 -0.194 "O5'A" ZZC 21 ZZC "C1'" "C1'" C 0 1 N N R N N N 32.552 -9.754 -19.871 -4.243 -0.405 0.895 "C1'" ZZC 22 ZZC O1A O1A O 0 1 N N N N N N 36.462 -11.848 -16.940 0.688 -2.192 -2.238 O1A ZZC 23 ZZC O1B O1B O -1 1 N N N N N N 36.421 -14.863 -18.360 3.168 0.283 -2.351 O1B ZZC 24 ZZC "C2'" "C2'" C 0 1 N N R N N N 33.719 -8.850 -19.490 -4.909 -1.757 0.531 "C2'" ZZC 25 ZZC "O2'" "O2'" O 0 1 N N N N N N 33.339 -7.484 -19.572 -6.108 -1.954 1.283 "O2'" ZZC 26 ZZC O2A O2A O -1 1 N N N N N N 37.723 -10.418 -18.742 1.535 -3.638 -0.353 O2A ZZC 27 ZZC O2B O2B O 0 1 N N N N N N 38.793 -14.823 -17.285 4.227 -1.948 -1.831 O2B ZZC 28 ZZC "C3'" "C3'" C 0 1 N N S N N N 34.785 -9.276 -20.489 -3.821 -2.777 0.949 "C3'" ZZC 29 ZZC "O3'" "O3'" O 0 1 N N N N N N 34.628 -8.606 -21.746 -4.106 -3.309 2.245 "O3'" ZZC 30 ZZC O3A O3A O 0 1 N N N N N N 38.141 -12.862 -18.576 2.210 -1.153 -0.438 O3A ZZC 31 ZZC "C4'" "C4'" C 0 1 N N R N N N 34.489 -10.771 -20.576 -2.521 -1.951 0.979 "C4'" ZZC 32 ZZC "O4'" "O4'" O 0 1 N N N N N N 33.087 -10.922 -20.489 -2.853 -0.615 0.566 "O4'" ZZC 33 ZZC "C5'" "C5'" C 0 1 N N N N N N 34.842 -11.446 -19.286 -1.498 -2.555 0.014 "C5'" ZZC 34 ZZC "O5'" "O5'" O 0 1 N N N N N N 36.021 -12.164 -19.388 -0.259 -1.854 0.134 "O5'" ZZC 35 ZZC H2 H2 H 0 1 N N N N N N 27.711 -8.218 -19.939 -8.586 2.163 2.135 H2 ZZC 36 ZZC HN6 HN6 H 0 1 N N N N N N 28.756 -10.012 -15.168 -8.147 4.723 -1.613 HN6 ZZC 37 ZZC HN6A HN6A H 0 0 N N N N N N 27.380 -9.217 -15.546 -6.753 4.187 -2.382 HN6A ZZC 38 ZZC H8 H8 H 0 1 N N N N N N 32.985 -10.933 -17.249 -3.395 0.812 -1.556 H8 ZZC 39 ZZC "H1'A" "H1'A" H 0 0 N N N N N N 41.774 -13.119 -23.657 10.344 1.290 2.119 "H1'A" ZZC 40 ZZC "H1'B" "H1'B" H 0 0 N N N N N N 41.988 -12.270 -22.089 9.257 1.884 3.398 "H1'B" ZZC 41 ZZC "H1'C" "H1'C" H 0 0 N N N N N N 42.539 -13.970 -22.272 8.823 0.433 2.464 "H1'C" ZZC 42 ZZC "H3'A" "H3'A" H 0 0 N N N N N N 40.579 -15.551 -21.084 8.535 0.833 -0.165 "H3'A" ZZC 43 ZZC "H4'A" "H4'A" H 0 0 N N N N N N 38.634 -16.638 -21.888 5.931 1.886 1.030 "H4'A" ZZC 44 ZZC "H5'A" "H5'A" H 0 0 N N N N N N 37.581 -13.871 -21.244 5.804 1.162 -1.373 "H5'A" ZZC 45 ZZC "H5'B" "H5'B" H 0 0 N N N N N N 36.871 -15.465 -20.854 6.446 -0.427 -0.892 "H5'B" ZZC 46 ZZC "H3'B" "H3'B" H 0 0 N N N N N N 40.855 -15.167 -23.860 7.177 3.373 -0.526 "H3'B" ZZC 47 ZZC "H4'B" "H4'B" H 0 0 N N N N N N 37.162 -15.090 -23.225 7.289 -0.654 1.391 "H4'B" ZZC 48 ZZC "H1'" "H1'" H 0 1 N N N N N N 31.879 -9.295 -20.610 -4.361 -0.193 1.958 "H1'" ZZC 49 ZZC "H2'" "H2'" H 0 1 N N N N N N 34.076 -8.946 -18.454 -5.108 -1.817 -0.539 "H2'" ZZC 50 ZZC "HO2'" "HO2'" H 0 0 N N N N N N 33.254 -7.125 -18.696 -6.561 -2.786 1.091 "HO2'" ZZC 51 ZZC "H3'" "H3'" H 0 1 N N N N N N 35.820 -9.037 -20.203 -3.749 -3.580 0.216 "H3'" ZZC 52 ZZC "HO3'" "HO3'" H 0 0 N N N N N N 34.593 -7.667 -21.603 -4.943 -3.789 2.297 "HO3'" ZZC 53 ZZC "H4'" "H4'" H 0 1 N N N N N N 35.002 -11.156 -21.470 -2.115 -1.935 1.991 "H4'" ZZC 54 ZZC "H5'" "H5'" H 0 1 N N N N N N 34.963 -10.678 -18.508 -1.346 -3.606 0.258 "H5'" ZZC 55 ZZC "H5'C" "H5'C" H 0 0 N N N N N N 34.033 -12.148 -19.033 -1.867 -2.468 -1.007 "H5'C" ZZC 56 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ZZC N1 C2 DOUB Y N 1 ZZC N1 C6 SING Y N 2 ZZC C2 N3 SING Y N 3 ZZC N3 C4 DOUB Y N 4 ZZC C4 C5 SING Y N 5 ZZC C4 N9 SING Y N 6 ZZC C5 C6 DOUB Y N 7 ZZC C5 N7 SING Y N 8 ZZC C6 N6 SING N N 9 ZZC N7 C8 DOUB Y N 10 ZZC C8 N9 SING Y N 11 ZZC N9 "C1'" SING N N 12 ZZC PA O1A DOUB N N 13 ZZC PA O2A SING N N 14 ZZC PA O3A SING N N 15 ZZC PA "O5'" SING N N 16 ZZC PB "O5'A" SING N N 17 ZZC PB O1B SING N N 18 ZZC PB O2B DOUB N N 19 ZZC PB O3A SING N N 20 ZZC "C1'A" "C2'A" SING N N 21 ZZC "C2'A" "C3'A" SING N N 22 ZZC "C2'A" "O2'A" DOUB N N 23 ZZC "C3'A" "C4'A" SING N N 24 ZZC "C3'A" "O3'A" SING N N 25 ZZC "C4'A" "C5'A" SING N N 26 ZZC "C4'A" "O4'A" SING N N 27 ZZC "C5'A" "O5'A" SING N N 28 ZZC "C1'" "C2'" SING N N 29 ZZC "C1'" "O4'" SING N N 30 ZZC "C2'" "O2'" SING N N 31 ZZC "C2'" "C3'" SING N N 32 ZZC "C3'" "O3'" SING N N 33 ZZC "C3'" "C4'" SING N N 34 ZZC "C4'" "O4'" SING N N 35 ZZC "C4'" "C5'" SING N N 36 ZZC "C5'" "O5'" SING N N 37 ZZC C2 H2 SING N N 38 ZZC N6 HN6 SING N N 39 ZZC N6 HN6A SING N N 40 ZZC C8 H8 SING N N 41 ZZC "C1'A" "H1'A" SING N N 42 ZZC "C1'A" "H1'B" SING N N 43 ZZC "C1'A" "H1'C" SING N N 44 ZZC "C3'A" "H3'A" SING N N 45 ZZC "C4'A" "H4'A" SING N N 46 ZZC "C5'A" "H5'A" SING N N 47 ZZC "C5'A" "H5'B" SING N N 48 ZZC "O3'A" "H3'B" SING N N 49 ZZC "O4'A" "H4'B" SING N N 50 ZZC "C1'" "H1'" SING N N 51 ZZC "C2'" "H2'" SING N N 52 ZZC "O2'" "HO2'" SING N N 53 ZZC "C3'" "H3'" SING N N 54 ZZC "O3'" "HO3'" SING N N 55 ZZC "C4'" "H4'" SING N N 56 ZZC "C5'" "H5'" SING N N 57 ZZC "C5'" "H5'C" SING N N 58 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ZZC SMILES_CANONICAL CACTVS 3.352 "CC(=O)[C@H](O)[C@H](O)CO[P]([O-])(=O)O[P]([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3c(N)ncnc23" ZZC SMILES CACTVS 3.352 "CC(=O)[CH](O)[CH](O)CO[P]([O-])(=O)O[P]([O-])(=O)OC[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(N)ncnc23" ZZC SMILES_CANONICAL "OpenEye OEToolkits" 1.6.1 "CC(=O)[C@@H]([C@@H](CO[P@](=O)([O-])O[P@@](=O)([O-])OC[C@@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2ncnc3N)O)O)O)O" ZZC SMILES "OpenEye OEToolkits" 1.6.1 "CC(=O)C(C(COP(=O)([O-])OP(=O)([O-])OCC1C(C(C(O1)n2cnc3c2ncnc3N)O)O)O)O" ZZC InChI InChI 1.03 "InChI=1S/C15H23N5O13P2/c1-6(21)10(23)7(22)2-30-34(26,27)33-35(28,29)31-3-8-11(24)12(25)15(32-8)20-5-19-9-13(16)17-4-18-14(9)20/h4-5,7-8,10-12,15,22-25H,2-3H2,1H3,(H,26,27)(H,28,29)(H2,16,17,18)/p-2/t7-,8-,10+,11-,12-,15-/m1/s1" ZZC InChIKey InChI 1.03 IZTPERUWNZCNNH-GHVQHMAVSA-L # _pdbx_chem_comp_identifier.comp_id ZZC _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 1.6.1 _pdbx_chem_comp_identifier.identifier "[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methyl [[(2R,3R)-2,3-dihydroxy-4-oxo-pentoxy]-oxido-phosphoryl] phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site ZZC "Create component" 2009-07-23 EBI ZZC "Modify aromatic_flag" 2011-06-04 RCSB ZZC "Modify descriptor" 2011-06-04 RCSB ZZC "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id ZZC _pdbx_chem_comp_pcm.modified_residue_id LYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom "C1'A" _pdbx_chem_comp_pcm.modified_residue_id_linking_atom NZ _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #