2018-10-10 REL PDBe PDBe PDBe 2018-07-31 2018-09-05 2018-09-26 2018-10-10 Retromer-Vps5: low-resolution overview map centred on the Vps35/29 arch. Kovtun O Leneva N Ariotti N Teasdale RD Owen DJ Collins BM Briggs JAG Kovtun O Leneva N Bykov YS Ariotti N Teasdale RD Schaffer M Engel BD Owen DJ Briggs JAG Collins BM Structure of the membrane-assembled retromer coat determined by cryo-electron tomography. Nature UK 561 561 564 2018 30224749 doi:10.1038/s41586-018-0526-z 1476-4687 0006 NATUAS EMD-0155 associated EM volume
Model of retromer-Vps5 complex assembled on membrane.
 Retromer-Vps5 complex assembled on the membrane. Retromer-Vps5 complex assembled on the membrane. 0 1 2 3 4
Vps26/Vps35/Vps29 trimer recruited to the membrane via Vps5 PX-BAR protein.
Chaetomium thermophilum var. thermophilum DSM 1495 Escherichia coli Vacuolar protein sorting-associated protein 35 LEVO MSTPAPPEEQARLLEDALIAVRQQTAMMRKFLDTPGKLMDALKCCSTLVSELRTSSLSPKQYYELYMAVFDALRYLSAHLRENHPVNHLADLYELVQYAGNIIPRLYLMITVGTAYMSIDGAPVKELMKDMMDMSRGVQHPVRGLFLRYYLSGQARDYLPTGDSDGPEGNLQDSINFILTNFVEMNKLWVRLQHQGHSRERDLRTQERRELQLLVGSNIVRLSQLVDLPTYRDSILGPLLEQIVQCRDILAQEYLLEVITQVFPDEYHLHTLDQFLGAVSRLNPHVNVKAIVIGMMNRLSDYAERESQNEPEEDRAKLEEEALAKLLEKTKLGQNSELEPQNGDHPDTEVSSTTDSAQAPSTADSDTTAVNGEEEPVRKRRGIPVNVPLYDIFFDQVQHLVQAQHLPIQDTIALCCSLANLSLNIYPERLDYVDGILAYALAKVKEHANSADLHSQPAQQSLLSLLQSPLRRYVSIFTALSLPTYVSLFQAQTYPTRRAIAGEIVRTLLKNQTLISTPAHLENVLEILKVLIKEGSQPPAGYPGVVQPRARPLETDETMEEQGWLARLVHLIHSDDNDTQFRLLQMTRKAYAEGNERIRTTTPPLITAGLKLARRFKAREHYDDNWSSQSSSLFKFLHSAISTLYTRVNGPGVADLCLRLFCSCGQVADMTEFEEVAYEFFAQAFTVYEESISDSKAQFQAVCVIASALHRTRNFGRENYDTLITKCAQHASKLLRKPDQCRAVYLASHLWWATPIAARGETEDTELYRDGKRVLECLQRALRVADSCMETATSIELFVEILDRYVYYFDQRNESVTTKYLNGLIELIHSNLAGNQQDSASVEASRKHFIQTLEMIQSKEFEGIVVAPK Vacuolar protein sorting-associated protein 26 LEVO MSYFFSTPVDIDIVLADADKRAMVDVKLDKNRREKVPLYMDGESVKGCVTVRPKDGKRLEHTGIKVQFIGTIEMFFDRGNHYEFLSLVQELAAPGELQHPQTFDFNFKNVEKQYESYNGINVKLRYFVRVTVSRRMADVIREKDIWVYSYRIPPELNSSIKMDVGIEDCLHIEFEYSKSKYHLKDVIVGRIYFLLVRLKIKHMELSIIRRETTGVAPNQYNESETLVRFEIMDGSPSRGETIPIRLFLGGFDLTPTFRDVNKKFSTRYYLSLVLIDEDARRYFKQSEIILYRQPPEYDNQLLPPPPDQKQVTAPLA Vacuolar protein sorting-associated protein 29 LEVO MAFLILVIGNLHIPDRALDIPPKFKKLLSPGKISQTLCLGNLTDRATYDYLRSISPDLKIVRGRMDVEATSLPLMQVVTHGSLRIGFLEGFTLVSEEPDVLLAEANKLDVDVLCWAGGSHRFECFEYMDKFFVNPGSATGAFTTDWLAEGEEVVPSFCLMDVQGISLTLYVYQLRKDENGTENVAVEKVTYTKPVEPTGAS Vacuolar protein sorting-associated protein 5 LEVO MEDPWADTASPNSSAPLSQHVEDSSSAPAAAAETPSNTATTTAPSISTSSRPSRATPRRIVAKPKSLEAVEDDPLGPLGAPTPSSDSDNNGLGGATARGVQPPVPPLKEQLPLRTTLPPSTTNRGGRGRRSGPPDPHHIDDDDDDAALFGSAGRGRPPPPVPASLPSPVKSSTAPSMSVEQAARPTFHITVGDPHKVGDLATSHIVYSVRTKTTSKAYKQPEFEVKRRYRDFLWLYNTLHSNNPGVVVPPPPEKQAVGRFESNFVESRRAALEKMLNKIAAHPTLQLDADLKLFLESESFNIDVKHKERKEPPLGESKGVFGSLGFGGGGNKFVEQDDWFHDRRVYLDALENQLKALLKAMDNMVAQRKAMAEAAADFSASLHALSTVELSPTLSGPLDALSELQLAIRDVYERQAQQDVLTFGIIIEEYIRLIGSVKQAFSQRQKAFHSWHSAESELMKKKAAQDKLLRQGKTQQDRLNQVNAEVIDAERKVHQARLLFEDMGRLLRSELDRFEREKVEDFKSGVETFLESAVEAQKELIEKWETFLMQLDAEDDESVFYRPPPVQTKKPAGDTAVDRARARIDEDSD subtomogramAveraging threeDArray 1.1 7.5 20.0 C8H19KN2O5S HEPES-KOH 200.0 NaCl sodium chloride C-flat-2/1 COPPER 300 CARBON HOLEY GLOW DISCHARGE AIR 0.039 ETHANE 95 292 LEICA EM GP
The solution-assembled complex was incubated with Folch liposomes at room temperature.
FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 70.0 2.7 2.5 6.5 105000. FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN GIF Quantum LS 20 GATAN K2 QUANTUM (4k x 4k) SUPER-RESOLUTION 2 3.17
Tomographic tilt series were acquired with the dose-symmetric tilt-scheme (Hagen et al., J Struct Biol. 2017)
 1
After motion correction in "alignframes" (IMOD), each of the images in the tilt series was low-pass filtered according to the electron-dose acquired by the sample (Grant and Grigorieff, 2015).
C2 BACK PROJECTION 11.8 FSC 0.143 CUT-OFF 18680 71 194885 reference-free geometrical seeding along the surface of manually traced tubules CTFFIND 4 IMOD
CTF correction was performed with ctfphaseflip IMOD command using defocus values measured by CTFFIND4 on non-dose-filtered images.
 OTHER AV3 TOM
Image processing was performed in TOM Toolbox, AV3 and Dynamo toolboxes.
 emd_0155.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 144 144 144 0 0 0 144 144 144 388.80002 388.80002 388.80002 90.0 90.0 90.0 X Y Z -0.36882836 0.6182291 0.0026788167 0.05111802 2.7 2.7 2.7 0.14 AUTHOR Low-resolution overview map of retromer-Vps5 centered on the Vps35/Vps29 arch.