data_PRDCC_900087
# 
_chem_comp.id                                    PRD_900087 
_chem_comp.name                                  "(1S)-1,5-anhydro-4-O-alpha-D-glucopyranosyl-1-(phosphonomethyl)-D-glucitol" 
_chem_comp.type                                  saccharide 
_chem_comp.formula                               "C13 H25 O13 P" 
_chem_comp.pdbx_release_status                   REF_ONLY 
_chem_comp.formula_weight                        420.304 
_chem_comp.pdbx_type                             ? 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    ? 
_chem_comp.pdbx_initial_date                     ? 
_chem_comp.pdbx_modified_date                    ? 
_chem_comp.pdbx_ambiguous_flag                   ? 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     ? 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   ? 
_chem_comp.pdbx_ideal_coordinates_details        ? 
_chem_comp.pdbx_ideal_coordinates_missing_flag   ? 
_chem_comp.pdbx_model_coordinates_db_code        ? 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_residue_numbering 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_polymer_type 
_chem_comp_atom.pdbx_ref_id 
_chem_comp_atom.pdbx_component_id 
_chem_comp_atom.pdbx_ordinal 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
PRD_900087 "C1'" C10 C 0 1 N N S 24.429 -30.556 282.115 2.892  0.844  -0.820 GPM 1 C1   polymer 1 1 1  ? ? ? 
PRD_900087 "C2'" C9  C 0 1 N N R 23.635 -29.909 281.014 2.157  2.171  -1.032 GPM 1 C2   polymer 1 1 2  ? ? ? 
PRD_900087 "C3'" C8  C 0 1 N N R 23.613 -30.805 279.889 0.824  2.133  -0.278 GPM 1 C3   polymer 1 1 3  ? ? ? 
PRD_900087 "C4'" C7  C 0 1 N N S 24.987 -31.029 279.368 0.008  0.933  -0.766 GPM 1 C4   polymer 1 1 4  ? ? ? 
PRD_900087 "C5'" C12 C 0 1 N N R 26.027 -31.326 280.438 0.826  -0.346 -0.565 GPM 1 C5   polymer 1 1 5  ? ? ? 
PRD_900087 "C6'" C13 C 0 1 N N N 27.439 -30.900 280.055 0.041  -1.544 -1.105 GPM 1 C6   polymer 1 1 6  ? ? ? 
PRD_900087 C     C11 C 0 1 N N N 23.865 -31.903 282.587 3.204  0.666  0.667  GPM 1 C7   polymer 1 1 7  ? ? ? 
PRD_900087 "O2'" O11 O 0 1 N N N 22.320 -29.594 281.510 2.958  3.245  -0.533 GPM 1 O2   polymer 1 1 8  ? ? ? 
PRD_900087 "O3'" O12 O 0 1 N N N 22.826 -30.163 278.913 0.099  3.339  -0.530 GPM 1 O3   polymer 1 1 9  ? ? ? 
PRD_900087 "O4'" O5  O 0 1 N N N 25.053 -32.203 278.548 -1.207 0.845  -0.019 GPM 1 O4   polymer 1 1 10 ? ? ? 
PRD_900087 "O5'" O9  O 0 1 N N N 25.823 -30.709 281.703 2.066  -0.233 -1.266 GPM 1 O5   polymer 1 1 11 ? ? ? 
PRD_900087 "O6'" O10 O 0 1 N N N 27.603 -29.535 279.790 0.740  -2.750 -0.794 GPM 1 O6   polymer 1 1 12 ? ? ? 
PRD_900087 P     P1  P 0 1 N N N 24.755 -32.728 283.961 4.207  -0.839 0.901  GPM 1 P    polymer 1 1 13 ? ? ? 
PRD_900087 OP2   O6  O 0 1 N N N 23.971 -33.937 284.385 5.415  -0.763 0.050  GPM 1 O1P  polymer 1 1 14 ? ? ? 
PRD_900087 OP1   O8  O 0 1 N N N 26.207 -33.088 283.569 3.340  -2.131 0.490  GPM 1 O2P  polymer 1 1 15 ? ? ? 
PRD_900087 OP3   O7  O 0 1 N N N 24.809 -31.702 285.142 4.645  -0.956 2.446  GPM 1 O3P  polymer 1 1 16 ? ? ? 
PRD_900087 C1    C3  C 0 1 N N R 24.728 -31.993 277.182 -2.388 0.924  -0.819 GLC 2 C1   polymer 1 1 17 ? ? ? 
PRD_900087 C2    C2  C 0 1 N N R 24.398 -33.354 276.597 -3.529 1.519  0.012  GLC 2 C2   polymer 1 1 18 ? ? ? 
PRD_900087 C3    C1  C 0 1 N N S 25.592 -34.196 276.434 -3.828 0.590  1.192  GLC 2 C3   polymer 1 1 19 ? ? ? 
PRD_900087 C4    C5  C 0 1 N N S 26.638 -33.490 275.657 -4.165 -0.806 0.657  GLC 2 C4   polymer 1 1 20 ? ? ? 
PRD_900087 C5    C4  C 0 1 N N R 26.988 -32.190 276.353 -3.000 -1.310 -0.199 GLC 2 C5   polymer 1 1 21 ? ? ? 
PRD_900087 C6    C6  C 0 1 N N N 28.107 -31.366 275.725 -3.353 -2.678 -0.787 GLC 2 C6   polymer 1 1 22 ? ? ? 
PRD_900087 O2    O13 O 0 1 N N N 23.468 -34.007 277.460 -3.143 2.804  0.502  GLC 2 O2   polymer 1 1 23 ? ? ? 
PRD_900087 O3    O1  O 0 1 N N N 25.241 -35.398 275.776 -4.940 1.099  1.931  GLC 2 O3   polymer 1 1 24 ? ? ? 
PRD_900087 O4    O3  O 0 1 N N N 27.763 -34.319 275.461 -4.375 -1.699 1.752  GLC 2 O4   polymer 1 1 25 ? ? ? 
PRD_900087 O5    O2  O 0 1 N N N 25.804 -31.344 276.448 -2.754 -0.385 -1.260 GLC 2 O5   polymer 1 1 26 ? ? ? 
PRD_900087 O6    O4  O 0 1 N N N 27.755 -30.801 274.482 -2.234 -3.187 -1.516 GLC 2 O6   polymer 1 1 27 ? ? ? 
PRD_900087 H14   H14 H 0 1 N N N 24.405 -29.877 282.980 3.822  0.849  -1.388 GPM 1 H1   polymer 1 1 28 ? ? ? 
PRD_900087 H13   H13 H 0 1 N N N 24.143 -28.978 280.724 1.971  2.319  -2.095 GPM 1 H2   polymer 1 1 29 ? ? ? 
PRD_900087 H12   H12 H 0 1 N N N 23.166 -31.768 280.177 1.011  2.037  0.791  GPM 1 H3   polymer 1 1 30 ? ? ? 
PRD_900087 H11   H11 H 0 1 N N N 25.308 -30.147 278.794 -0.223 1.054  -1.825 GPM 1 H4   polymer 1 1 31 ? ? ? 
PRD_900087 H19   H19 H 0 1 N N N 26.044 -32.416 280.581 1.021  -0.489 0.498  GPM 1 H5   polymer 1 1 32 ? ? ? 
PRD_900087 H20   H20 H 0 1 N N N 28.111 -31.168 280.884 -0.947 -1.567 -0.646 GPM 1 H61  polymer 1 1 33 ? ? ? 
PRD_900087 H21   H21 H 0 1 N N N 27.729 -31.458 279.153 -0.062 -1.452 -2.186 GPM 1 H62  polymer 1 1 34 ? ? ? 
PRD_900087 H15   H15 H 0 1 N N N 23.871 -32.588 281.726 2.272  0.572  1.225  GPM 1 H71  polymer 1 1 35 ? ? ? 
PRD_900087 H16   H16 H 0 1 N N N 22.828 -31.735 282.914 3.758  1.532  1.029  GPM 1 H72  polymer 1 1 36 ? ? ? 
PRD_900087 H23   H23 H 0 1 N N N 22.393 -29.002 282.249 2.551  4.116  -0.630 GPM 1 HO2  polymer 1 1 37 ? ? ? 
PRD_900087 H24   H24 H 0 1 N N N 21.950 -30.024 279.253 0.558  4.141  -0.245 GPM 1 HO3  polymer 1 1 38 ? ? ? 
PRD_900087 H22   H22 H 0 1 N N N 28.509 -29.363 279.561 0.256  -3.556 -1.023 GPM 1 HO6  polymer 1 1 39 ? ? ? 
PRD_900087 H18   H18 H 0 1 N N N 26.340 -34.023 283.670 2.531  -2.244 1.008  GPM 1 HOP2 polymer 1 1 40 ? ? ? 
PRD_900087 H17   H17 H 0 1 N N N 24.335 -32.051 285.888 5.183  -1.735 2.644  GPM 1 HOP3 polymer 1 1 41 ? ? ? 
PRD_900087 H4    H4  H 0 1 N N N 23.826 -31.367 277.116 -2.200 1.560  -1.684 GLC 2 H1   polymer 1 1 42 ? ? ? 
PRD_900087 H3    H3  H 0 1 N N N 23.935 -33.201 275.611 -4.419 1.618  -0.609 GLC 2 H2   polymer 1 1 43 ? ? ? 
PRD_900087 H2    H2  H 0 1 N N N 25.996 -34.430 277.430 -2.955 0.530  1.841  GLC 2 H3   polymer 1 1 44 ? ? ? 
PRD_900087 H6    H6  H 0 1 N N N 26.213 -33.234 274.676 -5.068 -0.754 0.049  GLC 2 H4   polymer 1 1 45 ? ? ? 
PRD_900087 H5    H5  H 0 1 N N N 27.306 -32.443 277.375 -2.106 -1.400 0.419  GLC 2 H5   polymer 1 1 46 ? ? ? 
PRD_900087 H8    H8  H 0 1 N N N 28.371 -30.552 276.416 -3.604 -3.366 0.020  GLC 2 H61  polymer 1 1 47 ? ? ? 
PRD_900087 H9    H9  H 0 1 N N N 28.980 -32.019 275.577 -4.207 -2.576 -1.456 GLC 2 H62  polymer 1 1 48 ? ? ? 
PRD_900087 H25   H25 H 0 1 N N N 22.697 -33.463 277.565 -2.938 3.445  -0.193 GLC 2 HO2  polymer 1 1 49 ? ? ? 
PRD_900087 H1    H1  H 0 1 N N N 24.571 -35.849 276.276 -4.796 1.981  2.300  GLC 2 HO3  polymer 1 1 50 ? ? ? 
PRD_900087 H7    H7  H 0 1 N N N 28.420 -33.849 274.962 -5.097 -1.438 2.339  GLC 2 HO4  polymer 1 1 51 ? ? ? 
PRD_900087 H10   H10 H 0 1 N N N 28.488 -30.302 274.142 -2.412 -4.015 -1.981 GLC 2 HO6  polymer 1 1 52 ? ? ? 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
PRD_900087 P     OP2   DOUB N N 1  
PRD_900087 P     C     SING N N 2  
PRD_900087 P     OP1   SING N N 3  
PRD_900087 P     OP3   SING N N 4  
PRD_900087 O3    C3    SING N N 5  
PRD_900087 C3    C4    SING N N 6  
PRD_900087 C3    C2    SING N N 7  
PRD_900087 C2    O2    SING N N 8  
PRD_900087 C2    C1    SING N N 9  
PRD_900087 C1    O5    SING N N 10 
PRD_900087 C1    "O4'" SING N N 11 
PRD_900087 O5    C5    SING N N 12 
PRD_900087 C5    C4    SING N N 13 
PRD_900087 C5    C6    SING N N 14 
PRD_900087 C4    O4    SING N N 15 
PRD_900087 C6    O6    SING N N 16 
PRD_900087 "O4'" "C4'" SING N N 17 
PRD_900087 "C4'" "C5'" SING N N 18 
PRD_900087 "C4'" "C3'" SING N N 19 
PRD_900087 "C3'" "O3'" SING N N 20 
PRD_900087 "C3'" "C2'" SING N N 21 
PRD_900087 "C2'" "O2'" SING N N 22 
PRD_900087 "C2'" "C1'" SING N N 23 
PRD_900087 "C1'" "O5'" SING N N 24 
PRD_900087 "C1'" C     SING N N 25 
PRD_900087 "O5'" "C5'" SING N N 26 
PRD_900087 "C5'" "C6'" SING N N 27 
PRD_900087 "C6'" "O6'" SING N N 28 
PRD_900087 O3    H1    SING N N 29 
PRD_900087 C3    H2    SING N N 30 
PRD_900087 C2    H3    SING N N 31 
PRD_900087 C1    H4    SING N N 32 
PRD_900087 C5    H5    SING N N 33 
PRD_900087 C4    H6    SING N N 34 
PRD_900087 O4    H7    SING N N 35 
PRD_900087 C6    H8    SING N N 36 
PRD_900087 C6    H9    SING N N 37 
PRD_900087 O6    H10   SING N N 38 
PRD_900087 "C4'" H11   SING N N 39 
PRD_900087 "C3'" H12   SING N N 40 
PRD_900087 "C2'" H13   SING N N 41 
PRD_900087 "C1'" H14   SING N N 42 
PRD_900087 C     H15   SING N N 43 
PRD_900087 C     H16   SING N N 44 
PRD_900087 OP3   H17   SING N N 45 
PRD_900087 OP1   H18   SING N N 46 
PRD_900087 "C5'" H19   SING N N 47 
PRD_900087 "C6'" H20   SING N N 48 
PRD_900087 "C6'" H21   SING N N 49 
PRD_900087 "O6'" H22   SING N N 50 
PRD_900087 "O2'" H23   SING N N 51 
PRD_900087 "O3'" H24   SING N N 52 
PRD_900087 O2    H25   SING N N 53 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
PRD_900087 InChI            InChI                1.06  "InChI=1S/C13H25O13P/c14-1-4-7(16)9(18)11(20)13(25-4)26-12-5(2-15)24-6(3-27(21,22)23)8(17)10(12)19/h4-20H,1-3H2,(H2,21,22,23)/t4-,5-,6-,7-,8+,9+,10-,11-,12-,13-/m1/s1" 
PRD_900087 InChIKey         InChI                1.06  LIGBAXRYIYXSON-NVYKSAHZSA-N                                                                                                                                             
PRD_900087 SMILES_CANONICAL CACTVS               3.385 "OC[C@H]1O[C@H](O[C@H]2[C@H](O)[C@@H](O)[C@@H](C[P](O)(O)=O)O[C@@H]2CO)[C@H](O)[C@@H](O)[C@@H]1O"                                                                       
PRD_900087 SMILES           CACTVS               3.385 "OC[CH]1O[CH](O[CH]2[CH](O)[CH](O)[CH](C[P](O)(O)=O)O[CH]2CO)[CH](O)[CH](O)[CH]1O"                                                                                      
PRD_900087 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C([C@@H]1[C@H]([C@@H]([C@H]([C@H](O1)O[C@@H]2[C@H](O[C@@H]([C@@H]([C@H]2O)O)CP(=O)(O)O)CO)O)O)O)O"                                                                     
PRD_900087 SMILES           "OpenEye OEToolkits" 2.0.7 "C(C1C(C(C(C(O1)OC2C(OC(C(C2O)O)CP(=O)(O)O)CO)O)O)O)O"                                                                                                                  
# 
_pdbx_chem_comp_identifier.comp_id           PRD_900087 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        
;[(2~{S},3~{R},4~{R},5~{S},6~{R})-6-(hydroxymethyl)-5-[(2~{R},3~{R},4~{S},5~{S},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxid
 anyl)oxan-2-yl]oxy-3,4-bis(oxidanyl)oxan-2-yl]methylphosphonic acid
;
# 
