data_UV0
# 
_chem_comp.id                                    UV0 
_chem_comp.name                                  "1-[[(2~{R},3~{S},4~{R},5~{R})-5-[8-[3-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl-methyl-amino]prop-1-ynyl]-6-azanyl-purin-9-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl]-3-naphthalen-1-yl-urea" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C35 H37 N13 O7" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-09-07 
_chem_comp.pdbx_modified_date                    2025-03-14 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        751.751 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     UV0 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8QGA 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
UV0 C4  C1  C 0 1 Y N N N N N 20.713 11.554 12.894 4.674   -4.396 0.025  C4  UV0 1  
UV0 C5  C2  C 0 1 Y N N N N N 20.374 12.679 12.169 4.639   -4.699 1.398  C5  UV0 2  
UV0 C6  C3  C 0 1 Y N N N N N 21.388 13.505 11.707 5.418   -5.777 1.859  C6  UV0 3  
UV0 C8  C4  C 0 1 Y N N N N N 18.565 11.646 12.717 3.323   -2.998 1.079  C8  UV0 4  
UV0 N1  N1  N 0 1 Y N N N N N 22.660 13.183 11.979 6.148   -6.453 0.978  N1  UV0 5  
UV0 N3  N2  N 0 1 Y N N N N N 22.004 11.289 13.133 5.435   -5.130 -0.780 N3  UV0 6  
UV0 C2  C5  C 0 1 Y N N N N N 22.949 12.096 12.678 6.147   -6.129 -0.303 C2  UV0 7  
UV0 CAA C6  C 0 1 N N N N N N 13.006 8.907  12.735 -1.242  -1.383 1.515  CAA UV0 8  
UV0 CAC C7  C 0 1 N N N N N N 14.571 10.692 13.093 0.698   0.037  1.804  CAC UV0 9  
UV0 CAD C8  C 0 1 N N N N N N 15.993 11.032 12.959 1.645   -1.058 1.543  CAD UV0 10 
UV0 CAE C9  C 0 1 N N N N N N 17.179 11.315 12.847 2.401   -1.932 1.334  CAE UV0 11 
UV0 CAP C10 C 0 1 N N R N N N 19.464 9.687  13.997 3.539   -2.653 -1.421 CAP UV0 12 
UV0 CAR C11 C 0 1 N N R N N N 18.036 8.058  14.654 2.686   -0.705 -2.337 CAR UV0 13 
UV0 CAS C12 C 0 1 N N N N N N 16.588 7.571  14.569 1.845   0.487  -1.876 CAS UV0 14 
UV0 CAU C13 C 0 1 N N N N N N 16.097 6.199  12.599 2.207   2.764  -1.087 CAU UV0 15 
UV0 CAX C14 C 0 1 Y N N N N N 15.602 5.039  10.639 2.479   5.030  -0.423 CAX UV0 16 
UV0 CAY C15 C 0 1 Y N N N N N 14.491 4.848  9.826  3.206   5.925  0.390  CAY UV0 17 
UV0 CAZ C16 C 0 1 Y N N N N N 13.531 5.847  9.714  4.479   5.595  0.881  CAZ UV0 18 
UV0 CBA C17 C 0 1 Y N N N N N 12.421 5.655  8.901  5.152   6.484  1.662  CBA UV0 19 
UV0 CBB C18 C 0 1 Y N N N N N 12.270 4.465  8.199  4.595   7.721  1.984  CBB UV0 20 
UV0 CBC C19 C 0 1 Y N N N N N 13.230 3.466  8.311  3.363   8.075  1.525  CBC UV0 21 
UV0 CBD C20 C 0 1 Y N N N N N 14.341 3.657  9.125  2.639   7.182  0.716  CBD UV0 22 
UV0 CBE C21 C 0 1 Y N N N N N 15.300 2.658  9.237  1.365   7.515  0.225  CBE UV0 23 
UV0 CBF C22 C 0 1 Y N N N N N 16.411 2.850  10.050 0.686   6.630  -0.557 CBF UV0 24 
UV0 CBG C23 C 0 1 Y N N N N N 16.562 4.040  10.751 1.233   5.394  -0.884 CBG UV0 25 
UV0 CBH C24 C 0 1 N N S N N N 18.212 8.919  15.906 1.764   -1.837 -2.830 CBH UV0 26 
UV0 CBJ C25 C 0 1 N N R N N N 19.174 10.022 15.462 2.128   -3.043 -1.929 CBJ UV0 27 
UV0 CBL C26 C 0 1 N N N N N N 14.160 9.884  10.870 -1.407  0.993  1.084  CBL UV0 28 
UV0 CBM C27 C 0 1 N N R N N N 15.526 9.750  10.194 -2.551  0.823  0.082  CBM UV0 29 
UV0 CBO C28 C 0 1 N N R N N N 16.822 8.390  8.930  -4.682  0.011  -0.183 CBO UV0 30 
UV0 CBP C29 C 0 1 N N R N N N 16.346 9.461  7.947  -4.867  1.546  -0.126 CBP UV0 31 
UV0 CBR C30 C 0 1 N N S N N N 15.471 10.380 8.801  -3.433  2.091  0.052  CBR UV0 32 
UV0 CBU C31 C 0 1 Y N N N N N 15.908 6.549  7.495  -5.816  -1.038 1.813  CBU UV0 33 
UV0 CBW C32 C 0 1 Y N N N N N 17.528 5.133  7.507  -7.714  -1.658 0.968  CBW UV0 34 
UV0 CBX C33 C 0 1 Y N N N N N 17.891 6.224  8.272  -6.980  -1.042 -0.060 CBX UV0 35 
UV0 CBZ C34 C 0 1 Y N N N N N 19.930 5.228  8.713  -8.726  -1.417 -1.507 CBZ UV0 36 
UV0 CCB C35 C 0 1 Y N N N N N 18.426 4.085  7.371  -8.997  -2.146 0.666  CCB UV0 37 
UV0 N6  N3  N 0 1 N N N N N N 21.102 14.597 11.004 5.426   -6.123 3.198  N6  UV0 38 
UV0 N7  N4  N 0 1 Y N N N N N 19.049 12.710 12.075 3.802   -3.817 1.986  N7  UV0 39 
UV0 N9  N5  N 0 1 Y N N N N N 19.580 10.939 13.217 3.834   -3.325 -0.153 N9  UV0 40 
UV0 NAB N6  N 0 1 N N N N N N 14.273 9.501  12.285 -0.535  -0.188 1.037  NAB UV0 41 
UV0 NAT N7  N 0 1 N N N N N N 16.209 7.401  13.159 2.730   1.600  -1.523 NAT UV0 42 
UV0 NAW N8  N 0 1 N N N N N N 15.747 6.181  11.312 3.021   3.788  -0.761 NAW UV0 43 
UV0 NBT N9  N 0 1 Y N N N N N 16.874 7.079  8.246  -5.786  -0.666 0.502  NBT UV0 44 
UV0 NBV N10 N 0 1 Y N N N N N 16.305 5.359  7.041  -6.948  -1.620 2.084  NBV UV0 45 
UV0 NBY N11 N 0 1 Y N N N N N 19.094 6.244  8.861  -7.521  -0.944 -1.270 NBY UV0 46 
UV0 NCA N12 N 0 1 Y N N N N N 19.615 4.167  7.987  -9.453  -2.003 -0.574 NCA UV0 47 
UV0 NCC N13 N 0 1 N N N N N N 18.114 3.017  6.643  -9.767  -2.763 1.637  NCC UV0 48 
UV0 OAQ O1  O 0 1 N N N N N N 18.301 8.962  13.571 3.448   -1.225 -1.234 OAQ UV0 49 
UV0 OAV O2  O 0 1 N N N N N N 16.307 5.171  13.243 1.002   2.890  -0.988 OAV UV0 50 
UV0 OBI O3  O 0 1 N N N N N N 18.822 8.141  16.939 2.030   -2.138 -4.201 OBI UV0 51 
UV0 OBK O4  O 0 1 N N N N N N 20.383 9.935  16.220 2.175   -4.251 -2.690 OBK UV0 52 
UV0 OBN O5  O 0 1 N N N N N N 15.799 8.364  9.938  -3.437  -0.236 0.507  OBN UV0 53 
UV0 OBQ O6  O 0 1 N N N N N N 17.472 10.194 7.458  -5.438  2.026  -1.345 OBQ UV0 54 
UV0 OBS O7  O 0 1 N N N N N N 16.050 11.687 8.845  -3.073  2.924  -1.052 OBS UV0 55 
UV0 H1  H1  H 0 1 N N N N N N 23.983 11.862 12.882 6.755   -6.706 -0.984 H1  UV0 56 
UV0 H2  H2  H 0 1 N N N N N N 13.090 8.620  13.794 -2.112  -1.566 0.885  H2  UV0 57 
UV0 H3  H3  H 0 1 N N N N N N 12.195 9.641  12.617 -0.573  -2.243 1.470  H3  UV0 58 
UV0 H4  H4  H 0 1 N N N N N N 12.784 8.015  12.130 -1.564  -1.228 2.544  H4  UV0 59 
UV0 H5  H5  H 0 1 N N N N N N 13.958 11.535 12.743 0.463   0.068  2.868  H5  UV0 60 
UV0 H6  H6  H 0 1 N N N N N N 14.341 10.485 14.149 1.145   0.984  1.504  H6  UV0 61 
UV0 H7  H7  H 0 1 N N N N N N 20.378 9.081  13.915 4.296   -2.895 -2.167 H7  UV0 62 
UV0 H8  H8  H 0 1 N N N N N N 18.733 7.207  14.665 3.357   -0.398 -3.139 H8  UV0 63 
UV0 H9  H9  H 0 1 N N N N N N 15.924 8.311  15.040 1.179   0.795  -2.682 H9  UV0 64 
UV0 H10 H10 H 0 1 N N N N N N 16.494 6.608  15.092 1.255   0.201  -1.006 H10 UV0 65 
UV0 H11 H11 H 0 1 N N N N N N 13.648 6.772  10.259 4.922   4.640  0.640  H11 UV0 66 
UV0 H12 H12 H 0 1 N N N N N N 11.675 6.431  8.814  6.131   6.228  2.039  H12 UV0 67 
UV0 H13 H13 H 0 1 N N N N N N 11.407 4.317  7.567  5.149   8.409  2.605  H13 UV0 68 
UV0 H14 H14 H 0 1 N N N N N N 13.113 2.541  7.766  2.944   9.036  1.782  H14 UV0 69 
UV0 H15 H15 H 0 1 N N N N N N 15.182 1.733  8.693  0.925   8.470  0.468  H15 UV0 70 
UV0 H16 H16 H 0 1 N N N N N N 17.157 2.074  10.137 -0.293  6.894  -0.930 H16 UV0 71 
UV0 H17 H17 H 0 1 N N N N N N 17.425 4.189  11.383 0.676   4.713  -1.511 H17 UV0 72 
UV0 H18 H18 H 0 1 N N N N N N 17.249 9.347  16.222 0.717   -1.562 -2.697 H18 UV0 73 
UV0 H19 H19 H 0 1 N N N N N N 18.699 11.010 15.548 1.427   -3.134 -1.099 H19 UV0 74 
UV0 H20 H20 H 0 1 N N N N N N 13.816 10.927 10.799 -0.829  1.882  0.827  H20 UV0 75 
UV0 H21 H21 H 0 1 N N N N N N 13.437 9.224  10.368 -1.816  1.103  2.088  H21 UV0 76 
UV0 H22 H22 H 0 1 N N N N N N 16.310 10.222 10.804 -2.156  0.611  -0.912 H22 UV0 77 
UV0 H23 H23 H 0 1 N N N N N N 17.803 8.660  9.348  -4.615  -0.324 -1.218 H23 UV0 78 
UV0 H24 H24 H 0 1 N N N N N N 15.758 9.009  7.134  -5.490  1.825  0.724  H24 UV0 79 
UV0 H25 H25 H 0 1 N N N N N N 14.438 10.396 8.422  -3.346  2.639  0.990  H25 UV0 80 
UV0 H26 H26 H 0 1 N N N N N N 14.954 7.011  7.287  -5.017  -0.877 2.521  H26 UV0 81 
UV0 H27 H27 H 0 1 N N N N N N 20.894 5.266  9.197  -9.136  -1.321 -2.502 H27 UV0 82 
UV0 H28 H28 H 0 1 N N N N N N 21.950 15.065 10.755 5.967   -6.867 3.504  H28 UV0 83 
UV0 H29 H29 H 0 1 N N N N N N 20.608 14.339 10.174 4.889   -5.622 3.832  H29 UV0 84 
UV0 H31 H31 H 0 1 N N N N N N 16.030 8.213  12.604 3.691   1.500  -1.602 H31 UV0 85 
UV0 H32 H32 H 0 1 N N N N N N 15.589 7.048  10.839 3.983   3.662  -0.762 H32 UV0 86 
UV0 H33 H33 H 0 1 N N N N N N 18.875 2.369  6.658  -9.422  -2.862 2.538  H33 UV0 87 
UV0 H34 H34 H 0 1 N N N N N N 17.298 2.582  7.023  -10.651 -3.096 1.416  H34 UV0 88 
UV0 H35 H35 H 0 1 N N N N N N 18.931 8.676  17.716 1.478   -2.844 -4.563 H35 UV0 89 
UV0 H36 H36 H 0 1 N N N N N N 20.203 10.143 17.129 1.316   -4.536 -3.030 H36 UV0 90 
UV0 H37 H37 H 0 1 N N N N N N 18.016 9.623  6.928  -5.521  2.989  -1.388 H37 UV0 91 
UV0 H38 H38 H 0 1 N N N N N N 15.506 12.257 9.376  -3.634  3.705  -1.155 H38 UV0 92 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
UV0 NCC CCB SING N N 1  
UV0 NBV CBU DOUB Y N 2  
UV0 NBV CBW SING Y N 3  
UV0 CCB CBW DOUB Y N 4  
UV0 CCB NCA SING Y N 5  
UV0 OBQ CBP SING N N 6  
UV0 CBU NBT SING Y N 7  
UV0 CBW CBX SING Y N 8  
UV0 CBP CBR SING N N 9  
UV0 CBP CBO SING N N 10 
UV0 NCA CBZ DOUB Y N 11 
UV0 CBB CBC DOUB Y N 12 
UV0 CBB CBA SING Y N 13 
UV0 NBT CBX SING Y N 14 
UV0 NBT CBO SING N N 15 
UV0 CBX NBY DOUB Y N 16 
UV0 CBC CBD SING Y N 17 
UV0 CBZ NBY SING Y N 18 
UV0 CBR OBS SING N N 19 
UV0 CBR CBM SING N N 20 
UV0 CBA CAZ DOUB Y N 21 
UV0 CBO OBN SING N N 22 
UV0 CBD CBE DOUB Y N 23 
UV0 CBD CAY SING Y N 24 
UV0 CBE CBF SING Y N 25 
UV0 CAZ CAY SING Y N 26 
UV0 CAY CAX DOUB Y N 27 
UV0 OBN CBM SING N N 28 
UV0 CBF CBG DOUB Y N 29 
UV0 CBM CBL SING N N 30 
UV0 CAX CBG SING Y N 31 
UV0 CAX NAW SING N N 32 
UV0 CBL NAB SING N N 33 
UV0 N6  C6  SING N N 34 
UV0 NAW CAU SING N N 35 
UV0 C6  N1  DOUB Y N 36 
UV0 C6  C5  SING Y N 37 
UV0 N1  C2  SING Y N 38 
UV0 N7  C5  SING Y N 39 
UV0 N7  C8  DOUB Y N 40 
UV0 C5  C4  DOUB Y N 41 
UV0 NAB CAA SING N N 42 
UV0 NAB CAC SING N N 43 
UV0 CAU NAT SING N N 44 
UV0 CAU OAV DOUB N N 45 
UV0 C2  N3  DOUB Y N 46 
UV0 C8  CAE SING N N 47 
UV0 C8  N9  SING Y N 48 
UV0 CAE CAD TRIP N N 49 
UV0 C4  N3  SING Y N 50 
UV0 C4  N9  SING Y N 51 
UV0 CAD CAC SING N N 52 
UV0 NAT CAS SING N N 53 
UV0 N9  CAP SING N N 54 
UV0 OAQ CAP SING N N 55 
UV0 OAQ CAR SING N N 56 
UV0 CAP CBJ SING N N 57 
UV0 CAS CAR SING N N 58 
UV0 CAR CBH SING N N 59 
UV0 CBJ CBH SING N N 60 
UV0 CBJ OBK SING N N 61 
UV0 CBH OBI SING N N 62 
UV0 C2  H1  SING N N 63 
UV0 CAA H2  SING N N 64 
UV0 CAA H3  SING N N 65 
UV0 CAA H4  SING N N 66 
UV0 CAC H5  SING N N 67 
UV0 CAC H6  SING N N 68 
UV0 CAP H7  SING N N 69 
UV0 CAR H8  SING N N 70 
UV0 CAS H9  SING N N 71 
UV0 CAS H10 SING N N 72 
UV0 CAZ H11 SING N N 73 
UV0 CBA H12 SING N N 74 
UV0 CBB H13 SING N N 75 
UV0 CBC H14 SING N N 76 
UV0 CBE H15 SING N N 77 
UV0 CBF H16 SING N N 78 
UV0 CBG H17 SING N N 79 
UV0 CBH H18 SING N N 80 
UV0 CBJ H19 SING N N 81 
UV0 CBL H20 SING N N 82 
UV0 CBL H21 SING N N 83 
UV0 CBM H22 SING N N 84 
UV0 CBO H23 SING N N 85 
UV0 CBP H24 SING N N 86 
UV0 CBR H25 SING N N 87 
UV0 CBU H26 SING N N 88 
UV0 CBZ H27 SING N N 89 
UV0 N6  H28 SING N N 90 
UV0 N6  H29 SING N N 91 
UV0 NAT H31 SING N N 92 
UV0 NAW H32 SING N N 93 
UV0 NCC H33 SING N N 94 
UV0 NCC H34 SING N N 95 
UV0 OBI H35 SING N N 96 
UV0 OBK H36 SING N N 97 
UV0 OBQ H37 SING N N 98 
UV0 OBS H38 SING N N 99 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
UV0 InChI            InChI                1.06  "InChI=1S/C35H37N13O7/c1-46(13-21-26(50)27(51)33(55-21)47-16-43-23-29(36)39-14-41-31(23)47)11-5-10-22-45-24-30(37)40-15-42-32(24)48(22)34-28(52)25(49)20(54-34)12-38-35(53)44-19-9-4-7-17-6-2-3-8-18(17)19/h2-4,6-9,14-16,20-21,25-28,33-34,49-52H,11-13H2,1H3,(H2,36,39,41)(H2,37,40,42)(H2,38,44,53)/t20-,21-,25-,26-,27-,28-,33-,34-/m1/s1" 
UV0 InChIKey         InChI                1.06  BRQIPZXOSHMOJF-YMWZHQEDSA-N                                                                                                                                                                                                                                                                                                                    
UV0 SMILES_CANONICAL CACTVS               3.385 "CN(CC#Cc1nc2c(N)ncnc2n1[C@@H]3O[C@H](CNC(=O)Nc4cccc5ccccc45)[C@@H](O)[C@H]3O)C[C@H]6O[C@H]([C@H](O)[C@@H]6O)n7cnc8c(N)ncnc78"                                                                                                                                                                                                                 
UV0 SMILES           CACTVS               3.385 "CN(CC#Cc1nc2c(N)ncnc2n1[CH]3O[CH](CNC(=O)Nc4cccc5ccccc45)[CH](O)[CH]3O)C[CH]6O[CH]([CH](O)[CH]6O)n7cnc8c(N)ncnc78"                                                                                                                                                                                                                            
UV0 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN(CC#Cc1nc2c(ncnc2n1[C@H]3[C@@H]([C@@H]([C@H](O3)CNC(=O)Nc4cccc5c4cccc5)O)O)N)C[C@@H]6[C@H]([C@H]([C@@H](O6)n7cnc8c7ncnc8N)O)O"                                                                                                                                                                                                              
UV0 SMILES           "OpenEye OEToolkits" 2.0.7 "CN(CC#Cc1nc2c(ncnc2n1C3C(C(C(O3)CNC(=O)Nc4cccc5c4cccc5)O)O)N)CC6C(C(C(O6)n7cnc8c7ncnc8N)O)O"                                                                                                                                                                                                                                                  
# 
_pdbx_chem_comp_identifier.comp_id           UV0 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "1-[[(2~{R},3~{S},4~{R},5~{R})-5-[8-[3-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl-methyl-amino]prop-1-ynyl]-6-azanyl-purin-9-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl]-3-naphthalen-1-yl-urea" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
UV0 "Create component" 2023-09-07 PDBE 
UV0 "Initial release"  2025-03-19 RCSB 
# 
