data_DN1
#

_chem_comp.id                                   DN1
_chem_comp.name                                 
;3-({(2S)-2-[({(1R)-1-[({(1R)-1-[(R)-CARBOXY(HYDROXY)METHYL]-3,3-DIFLUOROPROPYL}AMINO)CARBONYL]-3-METHYLBUTYL}AMINO)CARB
ONYL]-2,3-DIHYDRO-1H-INDOL-2-YL}METHYL)THIOPHENE-2-CARBOXYLIC ACID
;

_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C26 H31 F2 N3 O7 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "PEPTIDOMIMETIC INHIBITOR"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2004-07-14
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       567.602
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    DN1
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       1W3C
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
DN1  N1    N1    N  0  1  N  N  N  65.013  25.387   3.574   0.226   0.471   3.284  N1    DN1   1  
DN1  C2    C2    C  0  1  N  N  S  65.928  24.187   3.760   0.331  -0.964   3.014  C2    DN1   2  
DN1  C1    C1    C  0  1  N  N  N  66.050  23.414   2.401   0.941  -1.198   1.656  C1    DN1   3  
DN1  O2    O2    O  0  1  N  N  N  65.271  22.486   2.085   1.662  -2.156   1.471  O2    DN1   4  
DN1  N3    N3    N  0  1  N  N  N  67.070  23.739   1.562   0.686  -0.342   0.646  N3    DN1   5  
DN1  C4    C4    C  0  1  N  N  R  67.781  22.723   0.825   1.390  -0.485  -0.630  C4    DN1   6  
DN1  C5    C5    C  0  1  N  N  N  68.609  23.266  -0.326   2.777   0.149  -0.523  C5    DN1   7  
DN1  C6    C6    C  0  1  N  N  N  66.884  24.958  -1.052   4.898   0.628  -1.753  C6    DN1   8  
DN1  C7    C7    C  0  1  N  N  N  69.291  25.435  -1.476   3.793  -1.600  -1.989  C7    DN1   9  
DN1  C8    C8    C  0  1  N  N  N  68.305  24.776  -0.524   3.553  -0.098  -1.818  C8    DN1  10  
DN1  C9    C9    C  0  1  N  N  N  67.489  21.266   0.916   0.604   0.203  -1.716  C9    DN1  11  
DN1  O10   O10   O  0  1  N  N  N  67.870  20.482   1.809  -0.323   0.927  -1.426  O10   DN1  12  
DN1  N11   N11   N  0  1  N  N  N  66.640  20.669  -0.038   0.934   0.014  -3.009  N11   DN1  13  
DN1  C12   C12   C  0  1  N  N  R  66.341  19.223   0.235   0.093   0.576  -4.069  C12   DN1  14  
DN1  C13   C13   C  0  1  N  N  N  66.635  18.881   1.690  -0.981  -0.439  -4.460  C13   DN1  15  
DN1  C14   C14   C  0  1  N  N  N  65.552  18.751   2.698  -1.846  -0.762  -3.240  C14   DN1  16  
DN1  F15   F15   F  0  1  N  N  N  64.411  19.089   2.426  -2.829  -1.691  -3.598  F15   DN1  17  
DN1  F16   F16   F  0  1  N  N  N  65.812  19.398   3.720  -1.043  -1.299  -2.228  F16   DN1  18  
DN1  C17   C17   C  0  1  N  N  R  67.141  18.300  -0.830   0.958   0.899  -5.289  C17   DN1  19  
DN1  C18   C18   C  0  1  N  N  N  67.666  16.999  -0.072   0.093   1.478  -6.379  C18   DN1  20  
DN1  O19   O19   O  0  1  N  N  N  68.127  17.057   1.108  -0.595   2.609  -6.161  O19   DN1  21  
DN1  O20   O20   O  0  1  N  N  N  67.548  15.894  -0.675   0.018   0.923  -7.450  O20   DN1  22  
DN1  O21   O21   O  0  1  N  N  N  68.312  19.004  -1.294   1.582  -0.296  -5.760  O21   DN1  23  
DN1  C22   C22   C  0  1  N  N  N  65.223  23.290   4.840  -1.046  -1.625   3.096  C22   DN1  24  
DN1  C23   C23   C  0  1  N  N  N  67.273  24.729   4.349   1.253  -1.515   4.114  C23   DN1  25  
DN1  C24   C24   C  0  1  Y  N  N  65.760  26.496   4.011   0.980   0.804   4.410  C24   DN1  26  
DN1  C25   C25   C  0  1  Y  N  N  67.030  26.199   4.469   1.610  -0.306   4.950  C25   DN1  27  
DN1  C26   C26   C  0  1  Y  N  N  65.279  27.789   4.018   1.162   2.048   5.017  C26   DN1  28  
DN1  C27   C27   C  0  1  Y  N  N  67.878  27.196   4.935   2.405  -0.183   6.073  C27   DN1  29  
DN1  C28   C28   C  0  1  Y  N  N  67.408  28.515   4.942   2.580   1.051   6.669  C28   DN1  30  
DN1  C29   C29   C  0  1  Y  N  N  66.111  28.818   4.484   1.957   2.165   6.138  C29   DN1  31  
DN1  C30   C30   C  0  1  Y  N  N  66.270  22.486   5.612  -1.943  -1.048   2.031  C30   DN1  32  
DN1  C31   C31   C  0  1  Y  N  N  67.214  21.581   5.011  -2.017  -1.604   0.779  C31   DN1  33  
DN1  C32   C32   C  0  1  Y  N  N  68.301  21.310   5.818  -2.842  -1.047  -0.146  C32   DN1  34  
DN1  S33   S33   S  0  1  Y  N  N  68.203  22.158   7.300  -3.551   0.285   0.706  S33   DN1  35  
DN1  C34   C34   C  0  1  Y  N  N  66.735  22.876   6.861  -2.735   0.063   2.276  C34   DN1  36  
DN1  C35   C35   C  0  1  N  N  N  66.014  23.924   7.617  -2.862   0.854   3.502  C35   DN1  37  
DN1  O36   O36   O  0  1  N  N  N  66.506  24.130   8.761  -2.220   0.551   4.490  O36   DN1  38  
DN1  O37   O37   O  0  1  N  N  N  65.025  24.446   7.020  -3.691   1.918   3.536  O37   DN1  39  
DN1  H1    H1    H  0  1  N  N  N  64.060  25.388   3.210  -0.291   1.099   2.756  H1    DN1  40  
DN1  H3    H3    H  0  1  N  N  N  67.337  24.717   1.452   0.037   0.368   0.765  H3    DN1  41  
DN1  H4    H4    H  0  1  N  N  N  68.638  22.684   1.537   1.492  -1.543  -0.872  H4    DN1  42  
DN1  H5C1  1H5C  H  0  0  N  N  N  68.459  22.681  -1.263   3.316  -0.294   0.314  H5C1  DN1  43  
DN1  H5C2  2H5C  H  0  0  N  N  N  69.698  23.072  -0.188   2.674   1.222  -0.361  H5C2  DN1  44  
DN1  H6C1  1H6C  H  0  0  N  N  N  66.666  26.042  -1.194   5.451   0.451  -2.676  H6C1  DN1  45  
DN1  H6C2  2H6C  H  0  0  N  N  N  66.129  24.462  -0.399   4.727   1.698  -1.631  H6C2  DN1  46  
DN1  H6C3  3H6C  H  0  0  N  N  N  66.706  24.370  -1.983   5.474   0.253  -0.907  H6C3  DN1  47  
DN1  H7C1  1H7C  H  0  0  N  N  N  69.073  26.519  -1.618   4.411  -1.965  -1.168  H7C1  DN1  48  
DN1  H7C2  2H7C  H  0  0  N  N  N  69.331  24.899  -2.453   2.837  -2.123  -1.984  H7C2  DN1  49  
DN1  H7C3  3H7C  H  0  0  N  N  N  70.343  25.274  -1.144   4.302  -1.781  -2.935  H7C3  DN1  50  
DN1  H8    H8    H  0  1  N  N  N  68.380  25.283   0.466   2.978   0.276  -2.664  H8    DN1  51  
DN1  H11   H11   H  0  1  N  N  N  66.263  21.173  -0.840   1.728  -0.493  -3.238  H11   DN1  52  
DN1  H12   H12   H  0  1  N  N  N  65.250  19.066   0.065  -0.383   1.489  -3.709  H12   DN1  53  
DN1  H13   H13   H  0  1  N  N  N  67.370  19.626   2.074  -1.607  -0.021  -5.249  H13   DN1  54  
DN1  H13D  H13D  H  0  0  N  N  N  67.230  17.938   1.705  -0.505  -1.351  -4.820  H13D  DN1  55  
DN1  H14   H14   H  0  1  N  N  N  65.511  17.677   2.995  -2.322   0.149  -2.881  H14   DN1  56  
DN1  H17   H17   H  0  1  N  N  N  66.482  18.021  -1.685   1.723   1.623  -5.010  H17   DN1  57  
DN1  H19   H19   H  0  1  N  N  N  68.439  16.281   1.559  -1.150   2.980  -6.860  H19   DN1  58  
DN1  H21   H21   H  0  1  N  N  N  68.781  18.463  -1.918   0.871  -0.908  -5.996  H21   DN1  59  
DN1  H221  1H22  H  0  0  N  N  N  64.438  22.636   4.393  -0.944  -2.699   2.943  H221  DN1  60  
DN1  H222  2H22  H  0  0  N  N  N  64.570  23.887   5.518  -1.480  -1.437   4.078  H222  DN1  61  
DN1  H231  1H23  H  0  0  N  N  N  68.179  24.456   3.760   0.725  -2.253   4.719  H231  DN1  62  
DN1  H232  2H23  H  0  0  N  N  N  67.597  24.235   5.294   2.150  -1.952   3.676  H232  DN1  63  
DN1  H26   H26   H  0  1  N  N  N  64.258  28.010   3.663   0.678   2.922   4.608  H26   DN1  64  
DN1  H27   H27   H  0  1  N  N  N  68.894  26.955   5.290   2.891  -1.055   6.487  H27   DN1  65  
DN1  H28   H28   H  0  1  N  N  N  68.060  29.325   5.310   3.202   1.145   7.547  H28   DN1  66  
DN1  H29   H29   H  0  1  N  N  N  65.751  29.861   4.492   2.093   3.131   6.602  H29   DN1  67  
DN1  H31   H31   H  0  1  N  N  N  67.082  21.147   4.006  -1.427  -2.474   0.532  H31   DN1  68  
DN1  H32   H32   H  0  1  N  N  N  69.127  20.633   5.542  -3.014  -1.359  -1.165  H32   DN1  69  
DN1  H37   H37   H  0  1  N  N  N  64.562  25.118   7.505  -3.775   2.440   4.345  H37   DN1  70  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
DN1  N1   C2    SING  N  N   1  
DN1  N1   C24   SING  N  N   2  
DN1  N1   H1    SING  N  N   3  
DN1  C2   C1    SING  N  N   4  
DN1  C2   C22   SING  N  N   5  
DN1  C2   C23   SING  N  N   6  
DN1  C1   O2    DOUB  N  N   7  
DN1  C1   N3    SING  N  N   8  
DN1  N3   C4    SING  N  N   9  
DN1  N3   H3    SING  N  N  10  
DN1  C4   C5    SING  N  N  11  
DN1  C4   C9    SING  N  N  12  
DN1  C4   H4    SING  N  N  13  
DN1  C5   C8    SING  N  N  14  
DN1  C5   H5C1  SING  N  N  15  
DN1  C5   H5C2  SING  N  N  16  
DN1  C6   C8    SING  N  N  17  
DN1  C6   H6C1  SING  N  N  18  
DN1  C6   H6C2  SING  N  N  19  
DN1  C6   H6C3  SING  N  N  20  
DN1  C7   C8    SING  N  N  21  
DN1  C7   H7C1  SING  N  N  22  
DN1  C7   H7C2  SING  N  N  23  
DN1  C7   H7C3  SING  N  N  24  
DN1  C8   H8    SING  N  N  25  
DN1  C9   O10   DOUB  N  N  26  
DN1  C9   N11   SING  N  N  27  
DN1  N11  C12   SING  N  N  28  
DN1  N11  H11   SING  N  N  29  
DN1  C12  C13   SING  N  N  30  
DN1  C12  C17   SING  N  N  31  
DN1  C12  H12   SING  N  N  32  
DN1  C13  C14   SING  N  N  33  
DN1  C13  H13   SING  N  N  34  
DN1  C13  H13D  SING  N  N  35  
DN1  C14  F15   SING  N  N  36  
DN1  C14  F16   SING  N  N  37  
DN1  C14  H14   SING  N  N  38  
DN1  C17  C18   SING  N  N  39  
DN1  C17  O21   SING  N  N  40  
DN1  C17  H17   SING  N  N  41  
DN1  C18  O19   SING  N  N  42  
DN1  C18  O20   DOUB  N  N  43  
DN1  O19  H19   SING  N  N  44  
DN1  O21  H21   SING  N  N  45  
DN1  C22  C30   SING  N  N  46  
DN1  C22  H221  SING  N  N  47  
DN1  C22  H222  SING  N  N  48  
DN1  C23  C25   SING  N  N  49  
DN1  C23  H231  SING  N  N  50  
DN1  C23  H232  SING  N  N  51  
DN1  C24  C25   DOUB  Y  N  52  
DN1  C24  C26   SING  Y  N  53  
DN1  C25  C27   SING  Y  N  54  
DN1  C26  C29   DOUB  Y  N  55  
DN1  C26  H26   SING  N  N  56  
DN1  C27  C28   DOUB  Y  N  57  
DN1  C27  H27   SING  N  N  58  
DN1  C28  C29   SING  Y  N  59  
DN1  C28  H28   SING  N  N  60  
DN1  C29  H29   SING  N  N  61  
DN1  C30  C31   SING  Y  N  62  
DN1  C30  C34   DOUB  Y  N  63  
DN1  C31  C32   DOUB  Y  N  64  
DN1  C31  H31   SING  N  N  65  
DN1  C32  S33   SING  Y  N  66  
DN1  C32  H32   SING  N  N  67  
DN1  S33  C34   SING  Y  N  68  
DN1  C34  C35   SING  N  N  69  
DN1  C35  O36   DOUB  N  N  70  
DN1  C35  O37   SING  N  N  71  
DN1  O37  H37   SING  N  N  72  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
DN1  SMILES            ACDLabs               10.04  "O=C(O)C(O)C(NC(=O)C(NC(=O)C2(Nc1ccccc1C2)Cc3c(scc3)C(=O)O)CC(C)C)CC(F)F"  
DN1  SMILES_CANONICAL  CACTVS                3.341  "CC(C)C[C@@H](NC(=O)[C@]1(Cc2ccccc2N1)Cc3ccsc3C(O)=O)C(=O)N[C@H](CC(F)F)[C@@H](O)C(O)=O"  
DN1  SMILES            CACTVS                3.341  "CC(C)C[CH](NC(=O)[C]1(Cc2ccccc2N1)Cc3ccsc3C(O)=O)C(=O)N[CH](CC(F)F)[CH](O)C(O)=O"  
DN1  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "CC(C)CC(C(=O)N[C@H](CC(F)F)[C@H](C(=O)O)O)NC(=O)[C@]1(Cc2ccccc2N1)Cc3ccsc3C(=O)O"  
DN1  SMILES            "OpenEye OEToolkits"  1.5.0  "CC(C)CC(C(=O)NC(CC(F)F)C(C(=O)O)O)NC(=O)C1(Cc2ccccc2N1)Cc3ccsc3C(=O)O"  
DN1  InChI             InChI                 1.03   "InChI=1S/C26H31F2N3O7S/c1-13(2)9-18(22(33)29-17(10-19(27)28)20(32)23(34)35)30-25(38)26(11-14-5-3-4-6-16(14)31-26)12-15-7-8-39-21(15)24(36)37/h3-8,13,17-20,31-32H,9-12H2,1-2H3,(H,29,33)(H,30,38)(H,34,35)(H,36,37)/t17-,18-,20-,26+/m1/s1"  
DN1  InChIKey          InChI                 1.03   BEFPIHVRQQQFFB-DUFVWYDBSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
DN1  "SYSTEMATIC NAME"  ACDLabs               10.04  "3-{[N-({(2S)-2-[(2-carboxythiophen-3-yl)methyl]-2,3-dihydro-1H-indol-2-yl}carbonyl)-D-leucyl]amino}-3,4,5-trideoxy-5,5-difluoro-D-erythro-pentonic acid"  
DN1  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "3-[[(2S)-2-[[1-[[(2R,3R)-5,5-difluoro-1,2-dihydroxy-1-oxo-pentan-3-yl]amino]-4-methyl-1-oxo-pentan-2-yl]carbamoyl]-1,3-dihydroindol-2-yl]methyl]thiophene-2-carboxylic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
DN1  "Create component"   2004-07-14  EBI   
DN1  "Modify descriptor"  2011-06-04  RCSB  
DN1  "Modify synonyms"    2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     DN1
_pdbx_chem_comp_synonyms.name        "PEPTIDOMIMETIC INHIBITOR"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
