data_A1ES2
# 
_chem_comp.id                                    A1ES2 
_chem_comp.name                                  "8-[3-[[(2~{S})-3-(1~{H}-indol-4-yloxy)-2-oxidanyl-propyl]amino]propyl]-8-azaspiro[4.5]decane-7,9-dione" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C23 H31 N3 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2025-07-07 
_chem_comp.pdbx_modified_date                    2025-11-07 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        413.510 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     A1ES2 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        9VMY 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBC 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
A1ES2 C1  C1  C 0 1 N N S N N N 149.140 153.716 181.394 -2.451  0.077  -0.056 C1  A1ES2 1  
A1ES2 C10 C2  C 0 1 Y N N N N N 144.091 156.598 184.075 -8.524  -2.606 0.128  C10 A1ES2 2  
A1ES2 C11 C3  C 0 1 N N N N N N 149.594 154.547 182.589 -1.371  1.157  0.033  C11 A1ES2 3  
A1ES2 C12 C4  C 0 1 N N N N N N 151.430 155.833 183.533 1.020   1.535  0.080  C12 A1ES2 4  
A1ES2 C13 C5  C 0 1 N N N N N N 152.886 155.839 183.968 2.384   0.842  0.040  C13 A1ES2 5  
A1ES2 C14 C6  C 0 1 N N N N N N 153.106 156.542 185.285 3.493   1.893  0.127  C14 A1ES2 6  
A1ES2 C15 C7  C 0 1 N N N N N N 151.377 155.983 186.953 5.379   1.027  -1.104 C15 A1ES2 7  
A1ES2 C16 C8  C 0 1 N N N N N N 150.567 154.772 187.298 6.729   0.367  -1.213 C16 A1ES2 8  
A1ES2 C17 C9  C 0 1 N N N N N N 151.391 153.664 187.969 6.921   -0.584 -0.033 C17 A1ES2 9  
A1ES2 C18 C10 C 0 1 N N N N N N 151.614 153.965 189.473 5.938   -1.758 -0.135 C18 A1ES2 10 
A1ES2 C19 C11 C 0 1 N N N N N N 150.336 153.488 190.161 6.794   -3.039 -0.229 C19 A1ES2 11 
A1ES2 C2  C12 C 0 1 N N N N N N 148.014 154.378 180.636 -3.833  0.734  -0.019 C2  A1ES2 12 
A1ES2 C20 C13 C 0 1 N N N N N N 149.600 152.603 189.171 8.145   -2.642 0.416  C20 A1ES2 13 
A1ES2 C21 C14 C 0 1 N N N N N N 150.579 152.349 188.038 8.339   -1.182 -0.066 C21 A1ES2 14 
A1ES2 C22 C15 C 0 1 N N N N N N 152.727 153.442 187.246 6.705   0.172  1.277  C22 A1ES2 15 
A1ES2 C23 C16 C 0 1 N N N N N N 153.432 154.717 186.898 5.356   0.842  1.245  C23 A1ES2 16 
A1ES2 C3  C17 C 0 1 Y N N N N N 145.891 155.291 181.222 -6.133  0.138  0.052  C3  A1ES2 17 
A1ES2 C4  C18 C 0 1 Y N N N N N 145.409 155.182 179.939 -6.428  1.488  0.054  C4  A1ES2 18 
A1ES2 C5  C19 C 0 1 Y N N N N N 144.106 155.602 179.648 -7.748  1.916  0.091  C5  A1ES2 19 
A1ES2 C6  C20 C 0 1 Y N N N N N 143.281 156.130 180.602 -8.782  1.007  0.125  C6  A1ES2 20 
A1ES2 C7  C21 C 0 1 Y N N N N N 143.775 156.232 181.897 -8.509  -0.359 0.124  C7  A1ES2 21 
A1ES2 C8  C22 C 0 1 Y N N N N N 145.079 155.816 182.222 -7.175  -0.797 0.086  C8  A1ES2 22 
A1ES2 C9  C23 C 0 1 Y N N N N N 145.252 156.057 183.619 -7.228  -2.261 0.094  C9  A1ES2 23 
A1ES2 N1  N1  N 0 1 Y N N N N N 143.194 156.699 183.048 -9.306  -1.482 0.145  N1  A1ES2 24 
A1ES2 N2  N2  N 0 1 N N N N N N 151.047 154.684 182.712 -0.044  0.527  -0.004 N2  A1ES2 25 
A1ES2 N3  N3  N 0 1 N N N N N N 152.628 155.730 186.434 4.798   1.230  0.088  N3  A1ES2 26 
A1ES2 O1  O1  O 0 1 N N N N N N 150.194 153.512 180.473 -2.301  -0.647 -1.279 O1  A1ES2 27 
A1ES2 O2  O2  O 0 1 N N N N N N 147.137 154.922 181.620 -4.840  -0.279 0.015  O2  A1ES2 28 
A1ES2 O3  O3  O 0 1 N N N N N N 154.631 154.874 187.022 4.765   1.039  2.285  O3  A1ES2 29 
A1ES2 O4  O4  O 0 1 N N N N N N 150.977 157.120 187.107 4.809   1.385  -2.112 O4  A1ES2 30 
A1ES2 H2  H1  H 0 1 N N N N N N 148.782 152.745 181.767 -2.351  -0.607 0.786  H2  A1ES2 31 
A1ES2 H9  H2  H 0 1 N N N N N N 143.905 156.902 185.095 -8.896  -3.620 0.138  H9  A1ES2 32 
A1ES2 H11 H3  H 0 1 N N N N N N 149.160 155.553 182.493 -1.471  1.842  -0.809 H11 A1ES2 33 
A1ES2 H12 H4  H 0 1 N N N N N N 149.214 154.070 183.504 -1.485  1.709  0.966  H12 A1ES2 34 
A1ES2 H14 H5  H 0 1 N N N N N N 151.241 156.748 182.953 0.922   2.090  1.013  H14 A1ES2 35 
A1ES2 H15 H6  H 0 1 N N N N N N 150.802 155.835 184.436 0.937   2.223  -0.762 H15 A1ES2 36 
A1ES2 H16 H7  H 0 1 N N N N N N 153.227 154.798 184.065 2.467   0.155  0.882  H16 A1ES2 37 
A1ES2 H17 H8  H 0 1 N N N N N N 153.480 156.349 183.195 2.482   0.288  -0.893 H17 A1ES2 38 
A1ES2 H18 H9  H 0 1 N N N N N N 154.182 156.735 185.409 3.409   2.580  -0.715 H18 A1ES2 39 
A1ES2 H19 H10 H 0 1 N N N N N N 152.561 157.497 185.273 3.395   2.448  1.060  H19 A1ES2 40 
A1ES2 H20 H11 H 0 1 N N N N N N 149.762 155.074 187.985 6.786   -0.193 -2.146 H20 A1ES2 41 
A1ES2 H21 H12 H 0 1 N N N N N N 150.128 154.370 186.373 7.509   1.129  -1.197 H21 A1ES2 42 
A1ES2 H22 H13 H 0 1 N N N N N N 152.487 153.414 189.853 5.306   -1.795 0.753  H22 A1ES2 43 
A1ES2 H23 H14 H 0 1 N N N N N N 151.762 155.043 189.635 5.322   -1.653 -1.028 H23 A1ES2 44 
A1ES2 H24 H15 H 0 1 N N N N N N 150.586 152.915 191.066 6.328   -3.851 0.329  H24 A1ES2 45 
A1ES2 H25 H16 H 0 1 N N N N N N 149.710 154.350 190.434 6.938   -3.326 -1.271 H25 A1ES2 46 
A1ES2 H3  H17 H 0 1 N N N N N N 148.407 155.178 179.992 -3.914  1.358  0.871  H3  A1ES2 47 
A1ES2 H4  H18 H 0 1 N N N N N N 147.483 153.638 180.019 -3.967  1.350  -0.908 H4  A1ES2 48 
A1ES2 H26 H19 H 0 1 N N N N N N 149.310 151.655 189.647 8.081   -2.684 1.503  H26 A1ES2 49 
A1ES2 H27 H20 H 0 1 N N N N N N 148.702 153.114 188.794 8.950   -3.280 0.050  H27 A1ES2 50 
A1ES2 H28 H21 H 0 1 N N N N N N 151.232 151.494 188.266 8.738   -1.164 -1.080 H28 A1ES2 51 
A1ES2 H29 H22 H 0 1 N N N N N N 150.048 152.163 187.093 8.997   -0.640 0.613  H29 A1ES2 52 
A1ES2 H30 H23 H 0 1 N N N N N N 153.383 152.848 187.899 6.744   -0.528 2.112  H30 A1ES2 53 
A1ES2 H31 H24 H 0 1 N N N N N N 152.533 152.886 186.317 7.483   0.925  1.395  H31 A1ES2 54 
A1ES2 H5  H25 H 0 1 N N N N N N 146.034 154.774 179.158 -5.628  2.213  0.029  H5  A1ES2 55 
A1ES2 H6  H26 H 0 1 N N N N N N 143.740 155.506 178.636 -7.966  2.974  0.093  H6  A1ES2 56 
A1ES2 H7  H27 H 0 1 N N N N N N 142.281 156.456 180.358 -9.804  1.353  0.154  H7  A1ES2 57 
A1ES2 H8  H28 H 0 1 N N N N N N 146.137 155.849 184.202 -6.384  -2.934 0.076  H8  A1ES2 58 
A1ES2 H10 H29 H 0 1 N N N N N N 142.263 157.056 183.124 -10.275 -1.477 0.166  H10 A1ES2 59 
A1ES2 H13 H30 H 0 1 N N N N N N 151.414 153.853 183.131 0.050   -0.160 0.729  H13 A1ES2 60 
A1ES2 H1  H32 H 0 1 N N N N N N 150.925 153.095 180.915 -2.379  -0.099 -2.073 H1  A1ES2 61 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
A1ES2 O1  C1  SING N N 1  
A1ES2 C1  C2  SING N N 2  
A1ES2 C2  O2  SING N N 3  
A1ES2 O2  C3  SING N N 4  
A1ES2 C3  C4  DOUB Y N 5  
A1ES2 C4  C5  SING Y N 6  
A1ES2 C5  C6  DOUB Y N 7  
A1ES2 C6  C7  SING Y N 8  
A1ES2 C7  C8  DOUB Y N 9  
A1ES2 C8  C9  SING Y N 10 
A1ES2 C9  C10 DOUB Y N 11 
A1ES2 C10 N1  SING Y N 12 
A1ES2 C1  C11 SING N N 13 
A1ES2 C11 N2  SING N N 14 
A1ES2 N2  C12 SING N N 15 
A1ES2 C12 C13 SING N N 16 
A1ES2 C13 C14 SING N N 17 
A1ES2 C14 N3  SING N N 18 
A1ES2 N3  C15 SING N N 19 
A1ES2 C15 C16 SING N N 20 
A1ES2 C16 C17 SING N N 21 
A1ES2 C17 C18 SING N N 22 
A1ES2 C18 C19 SING N N 23 
A1ES2 C19 C20 SING N N 24 
A1ES2 C20 C21 SING N N 25 
A1ES2 C17 C22 SING N N 26 
A1ES2 C22 C23 SING N N 27 
A1ES2 C23 O3  DOUB N N 28 
A1ES2 C15 O4  DOUB N N 29 
A1ES2 C3  C8  SING Y N 30 
A1ES2 C7  N1  SING Y N 31 
A1ES2 N3  C23 SING N N 32 
A1ES2 C17 C21 SING N N 33 
A1ES2 C1  H2  SING N N 34 
A1ES2 C10 H9  SING N N 35 
A1ES2 C11 H11 SING N N 36 
A1ES2 C11 H12 SING N N 37 
A1ES2 C12 H14 SING N N 38 
A1ES2 C12 H15 SING N N 39 
A1ES2 C13 H16 SING N N 40 
A1ES2 C13 H17 SING N N 41 
A1ES2 C14 H18 SING N N 42 
A1ES2 C14 H19 SING N N 43 
A1ES2 C16 H20 SING N N 44 
A1ES2 C16 H21 SING N N 45 
A1ES2 C18 H22 SING N N 46 
A1ES2 C18 H23 SING N N 47 
A1ES2 C19 H24 SING N N 48 
A1ES2 C19 H25 SING N N 49 
A1ES2 C2  H3  SING N N 50 
A1ES2 C2  H4  SING N N 51 
A1ES2 C20 H26 SING N N 52 
A1ES2 C20 H27 SING N N 53 
A1ES2 C21 H28 SING N N 54 
A1ES2 C21 H29 SING N N 55 
A1ES2 C22 H30 SING N N 56 
A1ES2 C22 H31 SING N N 57 
A1ES2 C4  H5  SING N N 58 
A1ES2 C5  H6  SING N N 59 
A1ES2 C6  H7  SING N N 60 
A1ES2 C9  H8  SING N N 61 
A1ES2 N1  H10 SING N N 62 
A1ES2 N2  H13 SING N N 63 
A1ES2 O1  H1  SING N N 64 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
A1ES2 InChI            InChI                1.06  "InChI=1S/C23H31N3O4/c27-17(16-30-20-6-3-5-19-18(20)7-11-25-19)15-24-10-4-12-26-21(28)13-23(14-22(26)29)8-1-2-9-23/h3,5-7,11,17,24-25,27H,1-2,4,8-10,12-16H2/t17-/m0/s1" 
A1ES2 InChIKey         InChI                1.06  KVCDXJUCIQSGFP-KRWDZBQOSA-N                                                                                                                                              
A1ES2 SMILES_CANONICAL CACTVS               3.385 "O[C@@H](CNCCCN1C(=O)CC2(CCCC2)CC1=O)COc3cccc4[nH]ccc34"                                                                                                                 
A1ES2 SMILES           CACTVS               3.385 "O[CH](CNCCCN1C(=O)CC2(CCCC2)CC1=O)COc3cccc4[nH]ccc34"                                                                                                                   
A1ES2 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc2c(cc[nH]2)c(c1)OC[C@H](CNCCCN3C(=O)CC4(CCCC4)CC3=O)O"                                                                                                              
A1ES2 SMILES           "OpenEye OEToolkits" 2.0.7 "c1cc2c(cc[nH]2)c(c1)OCC(CNCCCN3C(=O)CC4(CCCC4)CC3=O)O"                                                                                                                  
# 
_pdbx_chem_comp_identifier.comp_id           A1ES2 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "8-[3-[[(2~{S})-3-(1~{H}-indol-4-yloxy)-2-oxidanyl-propyl]amino]propyl]-8-azaspiro[4.5]decane-7,9-dione" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
A1ES2 "Create component" 2025-07-07 PDBC 
A1ES2 "Initial release"  2025-11-12 RCSB 
# 
