data_WB3
# 
_chem_comp.id                                    WB3 
_chem_comp.name                                  "(2E)-3-[4-({2-[(1-{[4-(methanesulfonyl)phenyl]methyl}piperidin-4-yl)amino]pyrido[2,3-d]pyrimidin-4-yl}oxy)-3,5-dimethylphenyl]prop-2-enenitrile" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C31 H32 N6 O3 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-05-27 
_chem_comp.pdbx_modified_date                    2025-05-02 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        568.689 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     WB3 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8D0N 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
WB3 N   N1  N 0 1 N N N N N N 49.501 -30.890 34.667 -2.287 1.546  1.056  N   WB3 1  
WB3 C   C1  C 0 1 Y N N N N N 50.582 -35.556 36.652 -6.859 -0.102 0.056  C   WB3 2  
WB3 O   O1  O 0 1 N N N N N N 52.653 -36.837 37.565 -9.360 0.028  0.353  O   WB3 3  
WB3 C1  C2  C 0 1 Y N N N N N 49.444 -35.006 37.216 -6.700 0.831  1.064  C1  WB3 4  
WB3 C10 C3  C 0 1 N N N N N N 50.636 -29.464 33.033 -1.363 2.240  -1.104 C10 WB3 5  
WB3 C11 C4  C 0 1 N N N N N N 51.062 -28.708 34.279 -0.082 2.703  -0.405 C11 WB3 6  
WB3 C12 C5  C 0 1 Y N N N N N 52.454 -26.626 34.624 2.238  1.876  -0.293 C12 WB3 7  
WB3 C13 C6  C 0 1 Y N N N N N 52.200 -25.343 36.460 4.398  1.054  -0.190 C13 WB3 8  
WB3 C14 C7  C 0 1 Y N N N N N 50.712 -25.878 38.276 4.741  -1.243 -0.234 C14 WB3 9  
WB3 C15 C8  C 0 1 Y N N N N N 51.085 -27.071 38.895 4.547  -1.849 -1.469 C15 WB3 10 
WB3 C16 C9  C 0 1 N N N N N N 52.505 -27.575 38.879 4.905  -1.112 -2.734 C16 WB3 11 
WB3 C17 C10 C 0 1 Y N N N N N 50.087 -27.789 39.548 4.028  -3.123 -1.540 C17 WB3 12 
WB3 C18 C11 C 0 1 Y N N N N N 48.765 -27.341 39.589 3.695  -3.806 -0.365 C18 WB3 13 
WB3 C19 C12 C 0 1 N N N N N N 47.735 -28.065 40.340 3.141  -5.167 -0.435 C19 WB3 14 
WB3 C2  C13 C 0 1 Y N N N N N 48.889 -33.871 36.654 -5.454 1.031  1.630  C2  WB3 15 
WB3 C20 C14 C 0 1 N N N N N N 47.753 -29.159 41.086 2.822  -5.824 0.700  C20 WB3 16 
WB3 C21 C15 C 0 1 N N N N N N 46.655 -29.757 41.774 2.282  -7.149 0.632  C21 WB3 17 
WB3 C22 C16 C 0 1 Y N N N N N 48.444 -26.151 38.936 3.893  -3.192 0.877  C22 WB3 18 
WB3 C23 C17 C 0 1 Y N N N N N 49.405 -25.399 38.270 4.413  -1.918 0.936  C23 WB3 19 
WB3 C24 C18 C 0 1 N N N N N N 49.034 -24.110 37.586 4.626  -1.255 2.272  C24 WB3 20 
WB3 C25 C19 C 0 1 Y N N N N N 53.172 -24.414 35.987 4.872  2.386  -0.126 C25 WB3 21 
WB3 C26 C20 C 0 1 Y N N N N N 53.536 -23.184 36.575 6.237  2.688  -0.039 C26 WB3 22 
WB3 C27 C21 C 0 1 Y N N N N N 54.400 -22.357 35.932 6.602  4.006  0.018  C27 WB3 23 
WB3 C28 C22 C 0 1 Y N N N N N 54.908 -22.746 34.703 5.627  4.997  -0.011 C28 WB3 24 
WB3 C29 C23 C 0 1 Y N N N N N 53.734 -24.723 34.725 3.929  3.443  -0.163 C29 WB3 25 
WB3 C3  C24 C 0 1 Y N N N N N 51.174 -34.966 35.547 -5.775 -0.839 -0.382 C3  WB3 26 
WB3 C30 C25 C 0 1 N N N N N N 50.442 -37.243 38.858 -8.507 0.816  -2.049 C30 WB3 27 
WB3 C4  C26 C 0 1 Y N N N N N 50.603 -33.833 34.997 -4.531 -0.643 0.187  C4  WB3 28 
WB3 C5  C27 C 0 1 Y N N N N N 49.447 -33.278 35.531 -4.368 0.298  1.187  C5  WB3 29 
WB3 C6  C28 C 0 1 N N N N N N 48.732 -32.130 34.853 -3.012 0.512  1.807  C6  WB3 30 
WB3 C7  C29 C 0 1 N N N N N N 50.437 -30.632 35.773 -1.065 1.951  1.763  C7  WB3 31 
WB3 C8  C30 C 0 1 N N N N N N 51.554 -29.673 35.348 -0.415 3.125  1.028  C8  WB3 32 
WB3 C9  C31 C 0 1 N N N N N N 50.220 -30.880 33.392 -1.986 1.091  -0.308 C9  WB3 33 
WB3 N1  N2  N 0 1 N N N N N N 52.084 -27.726 33.938 0.886  1.604  -0.379 N1  WB3 34 
WB3 N2  N3  N 0 1 Y N N N N N 51.838 -26.413 35.808 3.092  0.856  -0.272 N2  WB3 35 
WB3 N3  N4  N 0 1 N N N N N N 45.758 -30.213 42.317 1.854  -8.200 0.578  N3  WB3 36 
WB3 N4  N5  N 0 1 Y N N N N N 54.606 -23.882 34.096 4.348  4.707  -0.093 N4  WB3 37 
WB3 N5  N6  N 0 1 Y N N N N N 53.386 -25.845 34.037 2.627  3.136  -0.241 N5  WB3 38 
WB3 O1  O2  O 0 1 N N N N N N 51.694 -25.085 37.698 5.258  0.011  -0.169 O1  WB3 39 
WB3 O2  O3  O 0 1 N N N N N N 50.877 -38.133 36.462 -8.404 -1.692 -1.145 O2  WB3 40 
WB3 S   S1  S 0 1 N N N N N N 51.256 -37.047 37.318 -8.447 -0.356 -0.665 S   WB3 41 
WB3 H2  H2  H 0 1 N N N N N N 48.994 -35.459 38.087 -7.548 1.403  1.410  H2  WB3 42 
WB3 H3  H3  H 0 1 N N N N N N 51.478 -29.501 32.326 -2.069 3.069  -1.158 H3  WB3 43 
WB3 H4  H4  H 0 1 N N N N N N 49.787 -28.944 32.565 -1.125 1.898  -2.111 H4  WB3 44 
WB3 H5  H5  H 0 1 N N N N N N 50.182 -28.181 34.676 0.342  3.550  -0.946 H5  WB3 45 
WB3 H6  H6  H 0 1 N N N N N N 53.045 -27.178 39.751 5.941  -1.324 -2.997 H6  WB3 46 
WB3 H7  H7  H 0 1 N N N N N N 52.504 -28.674 38.917 4.251  -1.438 -3.542 H7  WB3 47 
WB3 H8  H8  H 0 1 N N N N N N 53.002 -27.241 37.956 4.782  -0.040 -2.577 H8  WB3 48 
WB3 H9  H9  H 0 1 N N N N N N 50.342 -28.718 40.036 3.876  -3.593 -2.500 H9  WB3 49 
WB3 H10 H10 H 0 1 N N N N N N 46.757 -27.611 40.270 2.990  -5.640 -1.394 H10 WB3 50 
WB3 H11 H11 H 0 1 N N N N N N 48.005 -33.438 37.098 -5.329 1.759  2.417  H11 WB3 51 
WB3 H12 H12 H 0 1 N N N N N N 48.707 -29.655 41.185 2.973  -5.351 1.659  H12 WB3 52 
WB3 H13 H13 H 0 1 N N N N N N 47.421 -25.804 38.948 3.638  -3.715 1.786  H13 WB3 53 
WB3 H14 H14 H 0 1 N N N N N N 48.751 -24.316 36.543 3.727  -0.705 2.553  H14 WB3 54 
WB3 H15 H15 H 0 1 N N N N N N 48.186 -23.647 38.111 4.838  -2.014 3.025  H15 WB3 55 
WB3 H16 H16 H 0 1 N N N N N N 49.894 -23.425 37.604 5.468  -0.565 2.205  H16 WB3 56 
WB3 H17 H17 H 0 1 N N N N N N 53.128 -22.901 37.534 6.979  1.904  -0.017 H17 WB3 57 
WB3 H18 H18 H 0 1 N N N N N N 54.686 -21.413 36.371 7.646  4.276  0.086  H18 WB3 58 
WB3 H19 H19 H 0 1 N N N N N N 55.596 -22.077 34.208 5.929  6.033  0.035  H19 WB3 59 
WB3 H20 H20 H 0 1 N N N N N N 52.072 -35.387 35.120 -5.900 -1.567 -1.169 H20 WB3 60 
WB3 H21 H21 H 0 1 N N N N N N 50.721 -36.417 39.529 -7.702 0.593  -2.749 H21 WB3 61 
WB3 H22 H22 H 0 1 N N N N N N 49.353 -37.235 38.701 -9.467 0.726  -2.559 H22 WB3 62 
WB3 H23 H23 H 0 1 N N N N N N 50.740 -38.200 39.311 -8.390 1.831  -1.671 H23 WB3 63 
WB3 H24 H24 H 0 1 N N N N N N 51.064 -33.371 34.137 -3.682 -1.215 -0.159 H24 WB3 64 
WB3 H25 H25 H 0 1 N N N N N N 47.846 -31.885 35.458 -2.448 -0.421 1.779  H25 WB3 65 
WB3 H26 H26 H 0 1 N N N N N N 48.413 -32.477 33.859 -3.132 0.832  2.842  H26 WB3 66 
WB3 H27 H27 H 0 1 N N N N N N 49.884 -30.187 36.613 -1.317 2.253  2.779  H27 WB3 67 
WB3 H28 H28 H 0 1 N N N N N N 50.885 -31.585 36.092 -0.369 1.113  1.794  H28 WB3 68 
WB3 H29 H29 H 0 1 N N N N N N 52.396 -30.256 34.947 0.500  3.416  1.544  H29 WB3 69 
WB3 H30 H30 H 0 1 N N N N N N 51.889 -29.099 36.225 -1.106 3.969  1.008  H30 WB3 70 
WB3 H31 H31 H 0 1 N N N N N N 49.565 -31.277 32.603 -1.286 0.257  -0.266 H31 WB3 71 
WB3 H32 H32 H 0 1 N N N N N N 51.117 -31.511 33.476 -2.906 0.768  -0.794 H32 WB3 72 
WB3 H33 H33 H 0 1 N N N N N N 52.925 -28.260 33.848 0.578  0.685  -0.423 H33 WB3 73 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
WB3 C10 C9  SING N N 1  
WB3 C10 C11 SING N N 2  
WB3 C9  N   SING N N 3  
WB3 N1  C11 SING N N 4  
WB3 N1  C12 SING N N 5  
WB3 N5  C12 DOUB Y N 6  
WB3 N5  C29 SING Y N 7  
WB3 N4  C28 DOUB Y N 8  
WB3 N4  C29 SING Y N 9  
WB3 C11 C8  SING N N 10 
WB3 C12 N2  SING Y N 11 
WB3 N   C6  SING N N 12 
WB3 N   C7  SING N N 13 
WB3 C28 C27 SING Y N 14 
WB3 C29 C25 DOUB Y N 15 
WB3 C6  C5  SING N N 16 
WB3 C4  C5  DOUB Y N 17 
WB3 C4  C3  SING Y N 18 
WB3 C8  C7  SING N N 19 
WB3 C5  C2  SING Y N 20 
WB3 C3  C   DOUB Y N 21 
WB3 N2  C13 DOUB Y N 22 
WB3 C27 C26 DOUB Y N 23 
WB3 C25 C13 SING Y N 24 
WB3 C25 C26 SING Y N 25 
WB3 C13 O1  SING N N 26 
WB3 O2  S   DOUB N N 27 
WB3 C   C1  SING Y N 28 
WB3 C   S   SING N N 29 
WB3 C2  C1  DOUB Y N 30 
WB3 S   O   DOUB N N 31 
WB3 S   C30 SING N N 32 
WB3 C24 C23 SING N N 33 
WB3 O1  C14 SING N N 34 
WB3 C23 C14 DOUB Y N 35 
WB3 C23 C22 SING Y N 36 
WB3 C14 C15 SING Y N 37 
WB3 C16 C15 SING N N 38 
WB3 C15 C17 DOUB Y N 39 
WB3 C22 C18 DOUB Y N 40 
WB3 C17 C18 SING Y N 41 
WB3 C18 C19 SING N N 42 
WB3 C19 C20 DOUB N E 43 
WB3 C20 C21 SING N N 44 
WB3 C21 N3  TRIP N N 45 
WB3 C1  H2  SING N N 46 
WB3 C10 H3  SING N N 47 
WB3 C10 H4  SING N N 48 
WB3 C11 H5  SING N N 49 
WB3 C16 H6  SING N N 50 
WB3 C16 H7  SING N N 51 
WB3 C16 H8  SING N N 52 
WB3 C17 H9  SING N N 53 
WB3 C19 H10 SING N N 54 
WB3 C2  H11 SING N N 55 
WB3 C20 H12 SING N N 56 
WB3 C22 H13 SING N N 57 
WB3 C24 H14 SING N N 58 
WB3 C24 H15 SING N N 59 
WB3 C24 H16 SING N N 60 
WB3 C26 H17 SING N N 61 
WB3 C27 H18 SING N N 62 
WB3 C28 H19 SING N N 63 
WB3 C3  H20 SING N N 64 
WB3 C30 H21 SING N N 65 
WB3 C30 H22 SING N N 66 
WB3 C30 H23 SING N N 67 
WB3 C4  H24 SING N N 68 
WB3 C6  H25 SING N N 69 
WB3 C6  H26 SING N N 70 
WB3 C7  H27 SING N N 71 
WB3 C7  H28 SING N N 72 
WB3 C8  H29 SING N N 73 
WB3 C8  H30 SING N N 74 
WB3 C9  H31 SING N N 75 
WB3 C9  H32 SING N N 76 
WB3 N1  H33 SING N N 77 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
WB3 SMILES           ACDLabs              12.01 "Cc1cc(\C=C\C#N)cc(C)c1Oc1nc(nc2ncccc21)NC1CCN(Cc2ccc(cc2)S(C)(=O)=O)CC1"                                                                                                                                                
WB3 InChI            InChI                1.03  "InChI=1S/C31H32N6O3S/c1-21-18-24(6-4-14-32)19-22(2)28(21)40-30-27-7-5-15-33-29(27)35-31(36-30)34-25-12-16-37(17-13-25)20-23-8-10-26(11-9-23)41(3,38)39/h4-11,15,18-19,25H,12-13,16-17,20H2,1-3H3,(H,33,34,35,36)/b6-4+" 
WB3 InChIKey         InChI                1.03  GIPFCGYDMDLDIO-GQCTYLIASA-N                                                                                                                                                                                              
WB3 SMILES_CANONICAL CACTVS               3.385 "Cc1cc(\C=C\C#N)cc(C)c1Oc2nc(NC3CCN(CC3)Cc4ccc(cc4)[S](C)(=O)=O)nc5ncccc25"                                                                                                                                              
WB3 SMILES           CACTVS               3.385 "Cc1cc(C=CC#N)cc(C)c1Oc2nc(NC3CCN(CC3)Cc4ccc(cc4)[S](C)(=O)=O)nc5ncccc25"                                                                                                                                                
WB3 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1cc(cc(c1Oc2c3cccnc3nc(n2)NC4CCN(CC4)Cc5ccc(cc5)S(=O)(=O)C)C)/C=C/C#N"                                                                                                                                                
WB3 SMILES           "OpenEye OEToolkits" 2.0.7 "Cc1cc(cc(c1Oc2c3cccnc3nc(n2)NC4CCN(CC4)Cc5ccc(cc5)S(=O)(=O)C)C)C=CC#N"                                                                                                                                                  
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
WB3 "SYSTEMATIC NAME" ACDLabs              12.01 "(2E)-3-[4-({2-[(1-{[4-(methanesulfonyl)phenyl]methyl}piperidin-4-yl)amino]pyrido[2,3-d]pyrimidin-4-yl}oxy)-3,5-dimethylphenyl]prop-2-enenitrile" 
WB3 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(~{E})-3-[3,5-dimethyl-4-[2-[[1-[(4-methylsulfonylphenyl)methyl]piperidin-4-yl]amino]pyrido[2,3-d]pyrimidin-4-yl]oxy-phenyl]prop-2-enenitrile"   
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
WB3 "Create component" 2022-05-27 RCSB 
WB3 "Initial release"  2025-05-07 RCSB 
# 
