data_VP4
# 
_chem_comp.id                                    VP4 
_chem_comp.name                                  "N-[4-chloro-3-(dimethylamino)phenyl]-N~2~-[3-(hydroxymethyl)quinolin-6-yl]-L-alaninamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C21 H23 Cl N4 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2020-08-31 
_chem_comp.pdbx_modified_date                    2025-01-10 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        398.886 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     VP4 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7JYJ 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
VP4 C14  C1  C  0 1 N N N N N N 11.848 44.633 52.956 -6.997 -2.064 -0.566 C14  VP4 1  
VP4 C6   C2  C  0 1 Y N N N N N 14.715 41.510 52.026 -3.357 -0.236 0.495  C6   VP4 2  
VP4 C11  C3  C  0 1 Y N N N N N 13.975 42.504 52.681 -4.360 -0.850 -0.241 C11  VP4 3  
VP4 C7   C4  C  0 1 Y N N N N N 14.086 40.317 51.675 -3.557 1.036  1.015  C7   VP4 4  
VP4 C8   C5  C  0 1 Y N N N N N 12.735 40.123 51.917 -4.755 1.691  0.802  C8   VP4 5  
VP4 C9   C6  C  0 1 Y N N N N N 11.993 41.112 52.545 -5.758 1.083  0.069  C9   VP4 6  
VP4 C10  C7  C  0 1 Y N N N N N 12.600 42.321 52.934 -5.563 -0.190 -0.454 C10  VP4 7  
VP4 C13  C8  C  0 1 N N N N N N 12.032 43.367 55.045 -6.153 -1.026 -2.584 C13  VP4 8  
VP4 C3   C9  C  0 1 N N N N N N 16.920 42.665 51.734 -0.992 -0.204 0.758  C3   VP4 9  
VP4 CL15 CL1 CL 0 0 N N N N N N 10.305 40.798 52.825 -7.261 1.909  -0.197 CL15 VP4 10 
VP4 C1   C10 C  0 1 N N N N N N 19.117 41.874 52.652 0.329  -1.734 2.195  C1   VP4 11 
VP4 C2   C11 C  0 1 N N S N N N 18.383 42.402 51.415 0.322  -0.929 0.893  C2   VP4 12 
VP4 O4   O1  O  0 1 N N N N N N 16.521 43.792 51.973 -1.012 1.006  0.687  O4   VP4 13 
VP4 N5   N1  N  0 1 N N N N N N 16.096 41.587 51.750 -2.145 -0.901 0.717  N5   VP4 14 
VP4 N12  N2  N  0 1 N N N N N N 11.823 43.302 53.585 -6.576 -0.805 -1.195 N12  VP4 15 
VP4 N16  N3  N  0 1 N N N N N N 19.108 43.581 50.894 1.417  0.044  0.914  N16  VP4 16 
VP4 C17  C12 C  0 1 Y N N N N N 18.736 44.360 49.780 2.699  -0.339 0.514  C17  VP4 17 
VP4 C18  C13 C  0 1 Y N N N N N 19.094 45.729 49.765 2.931  -1.654 0.093  C18  VP4 18 
VP4 C19  C14 C  0 1 Y N N N N N 18.776 46.552 48.717 4.168  -2.054 -0.302 C19  VP4 19 
VP4 C20  C15 C  0 1 Y N N N N N 18.053 46.027 47.618 5.239  -1.142 -0.293 C20  VP4 20 
VP4 C21  C16 C  0 1 Y N N N N N 17.693 44.639 47.617 5.010  0.191  0.132  C21  VP4 21 
VP4 C22  C17 C  0 1 Y N N N N N 18.066 43.807 48.696 3.723  0.583  0.531  C22  VP4 22 
VP4 C23  C18 C  0 1 Y N N N N N 16.966 44.130 46.517 6.086  1.099  0.139  C23  VP4 23 
VP4 C24  C19 C  0 1 Y N N N N N 16.631 44.985 45.494 7.311  0.651  -0.267 C24  VP4 24 
VP4 C25  C20 C  0 1 Y N N N N N 17.017 46.331 45.549 7.467  -0.672 -0.673 C25  VP4 25 
VP4 N26  N4  N  0 1 Y N N N N N 17.709 46.803 46.570 6.463  -1.516 -0.678 N26  VP4 26 
VP4 C27  C21 C  0 1 N N N N N N 15.848 44.466 44.317 8.491  1.587  -0.277 C27  VP4 27 
VP4 O28  O2  O  0 1 N N N N N N 16.567 43.381 43.737 8.574  2.237  -1.547 O28  VP4 28 
VP4 H1   H1  H  0 1 N N N N N N 11.216 45.324 53.533 -7.372 -1.862 0.437  H1   VP4 29 
VP4 H2   H2  H  0 1 N N N N N N 12.881 45.010 52.937 -7.787 -2.522 -1.163 H2   VP4 30 
VP4 H3   H3  H  0 1 N N N N N N 11.466 44.559 51.927 -6.147 -2.743 -0.507 H3   VP4 31 
VP4 H4   H4  H  0 1 N N N N N N 14.461 43.416 52.994 -4.206 -1.839 -0.646 H4   VP4 32 
VP4 H5   H5  H  0 1 N N N N N N 14.660 39.531 51.207 -2.776 1.514  1.589  H5   VP4 33 
VP4 H6   H6  H  0 1 N N N N N N 12.260 39.201 51.616 -4.908 2.680  1.207  H6   VP4 34 
VP4 H7   H7  H  0 1 N N N N N N 11.392 44.153 55.473 -6.983 -1.440 -3.155 H7   VP4 35 
VP4 H8   H8  H  0 1 N N N N N N 11.773 42.398 55.496 -5.846 -0.077 -3.025 H8   VP4 36 
VP4 H9   H9  H  0 1 N N N N N N 13.087 43.599 55.254 -5.315 -1.723 -2.602 H9   VP4 37 
VP4 H10  H10 H  0 1 N N N N N N 18.585 40.996 53.048 1.280  -2.258 2.292  H10  VP4 38 
VP4 H11  H11 H  0 1 N N N N N N 20.142 41.588 52.375 0.199  -1.058 3.040  H11  VP4 39 
VP4 H12  H12 H  0 1 N N N N N N 19.151 42.660 53.421 -0.485 -2.458 2.179  H12  VP4 40 
VP4 H13  H13 H  0 1 N N N N N N 18.419 41.613 50.649 0.452  -1.605 0.048  H13  VP4 41 
VP4 H14  H14 H  0 1 N N N N N N 16.534 40.715 51.533 -2.135 -1.863 0.841  H14  VP4 42 
VP4 H15  H15 H  0 1 N N N N N N 20.029 43.251 50.687 1.251  0.954  1.207  H15  VP4 43 
VP4 H16  H16 H  0 1 N N N N N N 19.635 46.138 50.606 2.115  -2.361 0.083  H16  VP4 44 
VP4 H17  H17 H  0 1 N N N N N N 19.073 47.590 48.729 4.329  -3.073 -0.623 H17  VP4 45 
VP4 H18  H18 H  0 1 N N N N N N 17.833 42.753 48.678 3.538  1.596  0.856  H18  VP4 46 
VP4 H19  H19 H  0 1 N N N N N N 16.679 43.089 46.481 5.946  2.122  0.456  H19  VP4 47 
VP4 H20  H20 H  0 1 N N N N N N 16.744 46.994 44.742 8.441  -1.013 -0.991 H20  VP4 48 
VP4 H21  H21 H  0 1 N N N N N N 15.722 45.267 43.573 8.369  2.335  0.507  H21  VP4 49 
VP4 H22  H22 H  0 1 N N N N N N 14.860 44.119 44.653 9.406  1.021  -0.099 H22  VP4 50 
VP4 H23  H23 H  0 1 N N N N N N 16.084 43.043 42.992 9.312  2.856  -1.625 H23  VP4 51 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
VP4 O28 C27  SING N N 1  
VP4 C27 C24  SING N N 2  
VP4 C24 C25  DOUB Y N 3  
VP4 C24 C23  SING Y N 4  
VP4 C25 N26  SING Y N 5  
VP4 C23 C21  DOUB Y N 6  
VP4 N26 C20  DOUB Y N 7  
VP4 C21 C20  SING Y N 8  
VP4 C21 C22  SING Y N 9  
VP4 C20 C19  SING Y N 10 
VP4 C22 C17  DOUB Y N 11 
VP4 C19 C18  DOUB Y N 12 
VP4 C18 C17  SING Y N 13 
VP4 C17 N16  SING N N 14 
VP4 N16 C2   SING N N 15 
VP4 C2  C3   SING N N 16 
VP4 C2  C1   SING N N 17 
VP4 C7  C8   DOUB Y N 18 
VP4 C7  C6   SING Y N 19 
VP4 C3  N5   SING N N 20 
VP4 C3  O4   DOUB N N 21 
VP4 N5  C6   SING N N 22 
VP4 C8  C9   SING Y N 23 
VP4 C6  C11  DOUB Y N 24 
VP4 C9  CL15 SING N N 25 
VP4 C9  C10  DOUB Y N 26 
VP4 C11 C10  SING Y N 27 
VP4 C10 N12  SING N N 28 
VP4 C14 N12  SING N N 29 
VP4 N12 C13  SING N N 30 
VP4 C14 H1   SING N N 31 
VP4 C14 H2   SING N N 32 
VP4 C14 H3   SING N N 33 
VP4 C11 H4   SING N N 34 
VP4 C7  H5   SING N N 35 
VP4 C8  H6   SING N N 36 
VP4 C13 H7   SING N N 37 
VP4 C13 H8   SING N N 38 
VP4 C13 H9   SING N N 39 
VP4 C1  H10  SING N N 40 
VP4 C1  H11  SING N N 41 
VP4 C1  H12  SING N N 42 
VP4 C2  H13  SING N N 43 
VP4 N5  H14  SING N N 44 
VP4 N16 H15  SING N N 45 
VP4 C18 H16  SING N N 46 
VP4 C19 H17  SING N N 47 
VP4 C22 H18  SING N N 48 
VP4 C23 H19  SING N N 49 
VP4 C25 H20  SING N N 50 
VP4 C27 H21  SING N N 51 
VP4 C27 H22  SING N N 52 
VP4 O28 H23  SING N N 53 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
VP4 SMILES           ACDLabs              12.01 "CN(c1cc(ccc1Cl)NC(=O)C(C)Nc2ccc3c(c2)cc(cn3)CO)C"                                                                                                           
VP4 InChI            InChI                1.03  "InChI=1S/C21H23ClN4O2/c1-13(21(28)25-17-4-6-18(22)20(10-17)26(2)3)24-16-5-7-19-15(9-16)8-14(12-27)11-23-19/h4-11,13,24,27H,12H2,1-3H3,(H,25,28)/t13-/m0/s1" 
VP4 InChIKey         InChI                1.03  DPOWTSNHUDZSRA-ZDUSSCGKSA-N                                                                                                                                  
VP4 SMILES_CANONICAL CACTVS               3.385 "C[C@H](Nc1ccc2ncc(CO)cc2c1)C(=O)Nc3ccc(Cl)c(c3)N(C)C"                                                                                                       
VP4 SMILES           CACTVS               3.385 "C[CH](Nc1ccc2ncc(CO)cc2c1)C(=O)Nc3ccc(Cl)c(c3)N(C)C"                                                                                                        
VP4 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H](C(=O)Nc1ccc(c(c1)N(C)C)Cl)Nc2ccc3c(c2)cc(cn3)CO"                                                                                                    
VP4 SMILES           "OpenEye OEToolkits" 2.0.7 "CC(C(=O)Nc1ccc(c(c1)N(C)C)Cl)Nc2ccc3c(c2)cc(cn3)CO"                                                                                                         
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
VP4 "SYSTEMATIC NAME" ACDLabs              12.01 "N-[4-chloro-3-(dimethylamino)phenyl]-N~2~-[3-(hydroxymethyl)quinolin-6-yl]-L-alaninamide"                
VP4 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S})-~{N}-[4-chloranyl-3-(dimethylamino)phenyl]-2-[[3-(hydroxymethyl)quinolin-6-yl]amino]propanamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
VP4 "Create component" 2020-08-31 RCSB 
VP4 "Initial release"  2025-01-15 RCSB 
# 
