data_HD5
#

_chem_comp.id                                   HD5
_chem_comp.name                                 "[5-(aminomethyl)-1-benzothiophen-2-yl]boronic acid"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C9 H10 B N O2 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2018-12-03
_chem_comp.pdbx_modified_date                   2019-04-19
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       207.057
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    HD5
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6Q35
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
HD5  C14  C1   C  0  1  N  N  N  37.027  -14.289  -25.874   4.160  -0.826  -0.428  C14  HD5   1  
HD5  C13  C2   C  0  1  Y  N  N  34.578  -15.256  -26.249   2.714   1.204  -0.172  C13  HD5   2  
HD5  C12  C3   C  0  1  Y  N  N  33.616  -16.416  -26.186   1.486   1.807  -0.047  C12  HD5   3  
HD5  C11  C4   C  0  1  Y  N  N  34.125  -17.799  -25.723   0.320   1.033  -0.039  C11  HD5   4  
HD5  C01  C5   C  0  1  Y  N  N  36.015  -15.430  -25.832   2.806  -0.178  -0.291  C01  HD5   5  
HD5  C02  C6   C  0  1  Y  N  N  36.496  -16.770  -25.385   1.688  -0.950  -0.287  C02  HD5   6  
HD5  C03  C7   C  0  1  Y  N  N  35.518  -17.947  -25.345   0.407  -0.360  -0.159  C03  HD5   7  
HD5  C04  C8   C  0  1  Y  N  N  35.800  -19.452  -24.906  -0.851  -0.982  -0.134  C04  HD5   8  
HD5  C05  C9   C  0  1  Y  N  N  34.530  -20.154  -25.032  -1.898  -0.163  -0.003  C05  HD5   9  
HD5  B06  B1   B  0  1  N  N  N  34.390  -21.782  -24.704  -3.396  -0.630   0.050  B06  HD5  10  
HD5  O07  O1   O  0  1  N  N  N  35.936  -22.249  -24.283  -3.713  -2.011  -0.044  O07  HD5  11  
HD5  O09  O2   O  0  1  N  N  N  34.357  -22.379  -26.254  -4.433   0.329   0.192  O09  HD5  12  
HD5  S10  S1   S  0  1  Y  N  N  33.407  -19.177  -25.538  -1.369   1.507   0.103  S10  HD5  13  
HD5  N15  N1   N  0  1  N  N  N  38.351  -14.833  -25.787   4.684  -1.150   0.905  N15  HD5  14  
HD5  H1   H1   H  0  1  N  N  N  36.918  -13.734  -26.818   4.067  -1.740  -1.014  H1   HD5  15  
HD5  H2   H2   H  0  1  N  N  N  36.851  -13.610  -25.027   4.842  -0.140  -0.930  H2   HD5  16  
HD5  H3   H3   H  0  1  N  N  N  34.234  -14.293  -26.596   3.611   1.806  -0.181  H3   HD5  17  
HD5  H4   H4   H  0  1  N  N  N  32.581  -16.281  -26.462   1.420   2.881   0.046  H4   HD5  18  
HD5  H5   H5   H  0  1  N  N  N  37.526  -16.908  -25.092   1.777  -2.023  -0.381  H5   HD5  19  
HD5  H6   H6   H  0  1  N  N  N  36.742  -19.868  -24.581  -0.965  -2.053  -0.216  H6   HD5  20  
HD5  H7   H7   H  0  1  N  N  N  36.119  -21.973  -23.393  -4.660  -2.201  -0.002  H7   HD5  21  
HD5  H8   H8   H  0  1  N  N  N  34.277  -23.325  -26.228  -5.321  -0.054   0.215  H8   HD5  22  
HD5  H9   H9   H  0  1  N  N  N  39.020  -14.090  -25.814   5.592  -1.586   0.840  H9   HD5  23  
HD5  H10  H10  H  0  1  N  N  N  38.448  -15.338  -24.929   4.719  -0.328   1.490  H10  HD5  24  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
HD5  O09  B06  SING  N  N   1  
HD5  C13  C12  DOUB  Y  N   2  
HD5  C13  C01  SING  Y  N   3  
HD5  C12  C11  SING  Y  N   4  
HD5  C14  C01  SING  N  N   5  
HD5  C14  N15  SING  N  N   6  
HD5  C01  C02  DOUB  Y  N   7  
HD5  C11  S10  SING  Y  N   8  
HD5  C11  C03  DOUB  Y  N   9  
HD5  S10  C05  SING  Y  N  10  
HD5  C02  C03  SING  Y  N  11  
HD5  C03  C04  SING  Y  N  12  
HD5  C05  C04  DOUB  Y  N  13  
HD5  C05  B06  SING  N  N  14  
HD5  B06  O07  SING  N  N  15  
HD5  C14  H1   SING  N  N  16  
HD5  C14  H2   SING  N  N  17  
HD5  C13  H3   SING  N  N  18  
HD5  C12  H4   SING  N  N  19  
HD5  C02  H5   SING  N  N  20  
HD5  C04  H6   SING  N  N  21  
HD5  O07  H7   SING  N  N  22  
HD5  O09  H8   SING  N  N  23  
HD5  N15  H9   SING  N  N  24  
HD5  N15  H10  SING  N  N  25  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
HD5  InChI             InChI                 1.03   "InChI=1S/C9H10BNO2S/c11-5-6-1-2-8-7(3-6)4-9(14-8)10(12)13/h1-4,12-13H,5,11H2"  
HD5  InChIKey          InChI                 1.03   AMRAXCBFZWIMEQ-UHFFFAOYSA-N  
HD5  SMILES_CANONICAL  CACTVS                3.385  "NCc1ccc2sc(cc2c1)B(O)O"  
HD5  SMILES            CACTVS                3.385  "NCc1ccc2sc(cc2c1)B(O)O"  
HD5  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "B(c1cc2cc(ccc2s1)CN)(O)O"  
HD5  SMILES            "OpenEye OEToolkits"  2.0.6  "B(c1cc2cc(ccc2s1)CN)(O)O"  
#
_pdbx_chem_comp_identifier.comp_id          HD5
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.6
_pdbx_chem_comp_identifier.identifier       "[5-(aminomethyl)-1-benzothiophen-2-yl]boronic acid"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
HD5  "Create component"  2018-12-03  EBI   
HD5  "Initial release"   2019-04-24  RCSB  
##
