data_R06
# 
_chem_comp.id                                    R06 
_chem_comp.name                                  "1-[3,5-bis(2-chloranylethanoyl)-1,3,5-triazinan-1-yl]-2-chloranyl-ethanone" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C9 H12 Cl3 N3 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-11-21 
_chem_comp.pdbx_modified_date                    2025-03-21 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        316.569 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     R06 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   Y 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8BN1 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
R06 C1  C1  C  0 1 N N N N N N -32.424 4.486  14.199 1.887  2.581  0.047  C1  R06 1  
R06 C2  C2  C  0 1 N N N N N N -33.060 5.814  13.914 0.454  2.269  0.394  C2  R06 2  
R06 N1  N1  N  0 1 N N N N N N -32.424 6.948  14.272 0.151  1.125  1.039  N1  R06 3  
R06 C3  C3  C  0 1 N N N N N N -31.000 7.230  14.111 1.205  0.170  1.419  C3  R06 4  
R06 N2  N2  N  0 1 N N N N N N -30.902 8.353  13.164 0.794  -1.168 0.966  N2  R06 5  
R06 C4  C4  C  0 1 N N N N N N -30.353 8.252  11.929 1.637  -1.947 0.259  C4  R06 6  
R06 C5  C5  C  0 1 N N N N N N -30.146 9.497  11.122 3.020  -1.451 -0.077 C5  R06 7  
R06 O1  O1  O  0 1 N N N N N N -30.011 7.173  11.454 1.282  -3.048 -0.107 O1  R06 8  
R06 C6  C6  C  0 1 N N N N N N -31.521 9.558  13.729 -0.560 -1.634 1.304  C6  R06 9  
R06 N3  N3  N  0 1 N N N N N N -32.945 9.294  13.970 -1.513 -0.576 0.931  N3  R06 10 
R06 C7  C7  C  0 1 N N N N N N -33.898 10.125 13.499 -2.606 -0.859 0.194  C7  R06 11 
R06 C8  C8  C  0 1 N N N N N N -35.361 9.705  13.511 -3.569 0.239  -0.177 C8  R06 12 
R06 O2  O2  O  0 1 N N N N N N -33.602 11.240 13.088 -2.814 -1.997 -0.170 O2  R06 13 
R06 C9  C9  C  0 1 N N N N N N -33.137 8.110  14.818 -1.242 0.801  1.388  C9  R06 14 
R06 O3  O3  O  0 1 N N N N N N -34.125 5.858  13.308 -0.426 3.046  0.093  O3  R06 15 
R06 H1  H1  H  0 1 N N N N N N -32.337 4.376  15.290 2.480  2.629  0.960  H1  R06 16 
R06 H2  H2  H  0 1 N N N N N N -33.083 3.699  13.802 2.282  1.800  -0.603 H2  R06 17 
R06 H4  H4  H  0 1 N N N N N N -30.481 6.347  13.709 2.144  0.449  0.941  H4  R06 18 
R06 H5  H5  H  0 1 N N N N N N -30.556 7.508  15.078 1.329  0.171  2.502  H5  R06 19 
R06 H6  H6  H  0 1 N N N N N N -30.886 9.620  10.317 2.944  -0.539 -0.670 H6  R06 20 
R06 H7  H7  H  0 1 N N N N N N -30.114 10.410 11.734 3.564  -1.242 0.844  H7  R06 21 
R06 H9  H9  H  0 1 N N N N N N -31.028 9.816  14.678 -0.785 -2.545 0.750  H9  R06 22 
R06 H10 H10 H  0 1 N N N N N N -31.415 10.394 13.022 -0.626 -1.827 2.375  H10 R06 23 
R06 H11 H11 H  0 1 N N N N N N -35.838 9.205  14.367 -3.973 0.690  0.729  H11 R06 24 
R06 H12 H12 H  0 1 N N N N N N -36.132 10.187 12.892 -3.048 0.998  -0.760 H12 R06 25 
R06 H14 H14 H  0 1 N N N N N N -32.755 8.325  15.827 -1.376 0.867  2.467  H14 R06 26 
R06 H15 H15 H  0 1 N N N N N N -34.211 7.879  14.874 -1.917 1.495  0.889  H15 R06 27 
R06 CL1 CL1 CL 0 0 N Y N N N N ?       ?      ?      -4.918 -0.451 -1.156 CL1 R06 28 
R06 CL2 CL2 CL 0 0 N Y N N N N ?       ?      ?      1.967  4.168  -0.805 CL2 R06 29 
R06 CL3 CL3 CL 0 0 N Y N N N N ?       ?      ?      3.898  -2.711 -1.021 CL3 R06 30 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
R06 C5 C4  SING N N 1  
R06 O1 C4  DOUB N N 2  
R06 C4 N2  SING N N 3  
R06 O2 C7  DOUB N N 4  
R06 N2 C6  SING N N 5  
R06 N2 C3  SING N N 6  
R06 O3 C2  DOUB N N 7  
R06 C7 C8  SING N N 8  
R06 C7 N3  SING N N 9  
R06 C6 N3  SING N N 10 
R06 C2 C1  SING N N 11 
R06 C2 N1  SING N N 12 
R06 N3 C9  SING N N 13 
R06 C3 N1  SING N N 14 
R06 N1 C9  SING N N 15 
R06 C1 H1  SING N N 16 
R06 C1 H2  SING N N 17 
R06 C3 H4  SING N N 18 
R06 C3 H5  SING N N 19 
R06 C5 H6  SING N N 20 
R06 C5 H7  SING N N 21 
R06 C6 H9  SING N N 22 
R06 C6 H10 SING N N 23 
R06 C8 H11 SING N N 24 
R06 C8 H12 SING N N 25 
R06 C9 H14 SING N N 26 
R06 C9 H15 SING N N 27 
R06 C8 CL1 SING N N 28 
R06 C1 CL2 SING N N 29 
R06 C5 CL3 SING N N 30 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
R06 InChI            InChI                1.06    "InChI=1S/C9H12Cl3N3O3/c10-1-7(16)13-4-14(8(17)2-11)6-15(5-13)9(18)3-12/h1-6H2" 
R06 InChIKey         InChI                1.06    FIABSBGSWCLPPP-UHFFFAOYSA-N                                                     
R06 SMILES_CANONICAL CACTVS               3.385   "ClCC(=O)N1CN(CN(C1)C(=O)CCl)C(=O)CCl"                                          
R06 SMILES           CACTVS               3.385   "ClCC(=O)N1CN(CN(C1)C(=O)CCl)C(=O)CCl"                                          
R06 SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "C1N(CN(CN1C(=O)CCl)C(=O)CCl)C(=O)CCl"                                          
R06 SMILES           "OpenEye OEToolkits" 3.1.0.0 "C1N(CN(CN1C(=O)CCl)C(=O)CCl)C(=O)CCl"                                          
# 
_pdbx_chem_comp_identifier.comp_id           R06 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   3.1.0.0 
_pdbx_chem_comp_identifier.identifier        "1-[3,5-bis(2-chloranylethanoyl)-1,3,5-triazinan-1-yl]-2-chloranyl-ethanone" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
R06 "Create component"   2022-11-21 PDBE 
R06 "Modify coordinates" 2022-11-23 PDBE 
R06 "Modify PCM"         2025-02-06 PDBE 
R06 "Initial release"    2025-03-26 RCSB 
# 
loop_
_pdbx_chem_comp_pcm.pcm_id 
_pdbx_chem_comp_pcm.comp_id 
_pdbx_chem_comp_pcm.modified_residue_id 
_pdbx_chem_comp_pcm.type 
_pdbx_chem_comp_pcm.category 
_pdbx_chem_comp_pcm.position 
_pdbx_chem_comp_pcm.polypeptide_position 
_pdbx_chem_comp_pcm.comp_id_linking_atom 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession 
1 R06 CYS None Crosslinker "Amino-acid side chain" "Any position" C5 SG ? ? 
2 R06 CYS None Crosslinker "Amino-acid side chain" "Any position" C1 SG ? ? 
3 R06 CYS None Crosslinker "Amino-acid side chain" "Any position" C8 SG ? ? 
# 
