data_A1ESA
# 
_chem_comp.id                                    A1ESA 
_chem_comp.name                                  Gepirone 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C19 H29 N5 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2025-06-24 
_chem_comp.pdbx_modified_date                    2025-11-07 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        359.466 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     A1ESA 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        9VJ5 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBC 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
A1ESA C1  C1  C 0 1 N N N N N N 150.063 153.167 186.586 8.332  0.005  -0.609 C1  A1ESA 1  
A1ESA C10 C2  C 0 1 N N N N N N 145.002 153.908 182.017 -0.582 -0.764 -0.867 C10 A1ESA 2  
A1ESA C11 C3  C 0 1 N N N N N N 142.885 154.997 181.851 -2.890 -1.370 -1.277 C11 A1ESA 3  
A1ESA C12 C4  C 0 1 N N N N N N 141.828 155.526 180.915 -4.306 -1.304 -0.698 C12 A1ESA 4  
A1ESA C13 C5  C 0 1 N N N N N N 142.298 153.596 179.454 -3.779 0.814  0.348  C13 A1ESA 5  
A1ESA C14 C6  C 0 1 N N N N N N 143.309 153.144 180.476 -2.364 0.748  -0.230 C14 A1ESA 6  
A1ESA C15 C7  C 0 1 Y N N N N N 139.967 154.344 179.807 -6.008 0.201  -0.090 C15 A1ESA 7  
A1ESA C16 C8  C 0 1 Y N N N N N 138.319 153.639 178.431 -7.779 1.531  0.535  C16 A1ESA 8  
A1ESA C17 C9  C 0 1 Y N N N N N 137.371 154.147 179.281 -8.533 0.393  0.779  C17 A1ESA 9  
A1ESA C18 C10 C 0 1 Y N N N N N 137.830 154.766 180.415 -7.950 -0.846 0.563  C18 A1ESA 10 
A1ESA C19 C11 C 0 1 N N N N N N 151.945 154.510 187.524 7.028  0.768  1.384  C19 A1ESA 11 
A1ESA C2  C12 C 0 1 N N N N N N 150.734 154.540 186.593 6.930  0.157  -0.015 C2  A1ESA 12 
A1ESA C3  C13 C 0 1 N N N N N N 151.165 154.913 185.176 6.085  1.065  -0.915 C3  A1ESA 13 
A1ESA C4  C14 C 0 1 N N N N N N 150.028 155.169 184.227 4.677  1.115  -0.385 C4  A1ESA 14 
A1ESA C5  C15 C 0 1 N N N N N N 148.590 155.825 186.126 4.836  -1.041 0.543  C5  A1ESA 15 
A1ESA C6  C16 C 0 1 N N N N N N 149.741 155.599 187.065 6.253  -1.216 0.065  C6  A1ESA 16 
A1ESA C7  C17 C 0 1 N N N N N N 147.739 155.963 183.829 2.770  0.188  0.772  C7  A1ESA 17 
A1ESA C8  C18 C 0 1 N N N N N N 146.933 154.742 183.447 1.814  -0.343 -0.299 C8  A1ESA 18 
A1ESA C9  C19 C 0 1 N N N N N N 145.783 155.108 182.539 0.373  -0.233 0.204  C9  A1ESA 19 
A1ESA N1  N1  N 0 1 N N N N N N 148.830 155.641 184.765 4.149  0.083  0.291  N1  A1ESA 20 
A1ESA N2  N2  N 0 1 N N N N N N 143.912 154.293 181.115 -1.965 -0.658 -0.384 N2  A1ESA 21 
A1ESA N3  N3  N 0 1 N N N N N N 141.300 154.463 180.068 -4.704 0.102  -0.545 N3  A1ESA 22 
A1ESA N4  N4  N 0 1 Y N N N N N 139.630 153.722 178.667 -6.535 1.401  0.106  N4  A1ESA 23 
A1ESA N5  N5  N 0 1 Y N N N N N 139.127 154.886 180.703 -6.701 -0.906 0.134  N5  A1ESA 24 
A1ESA O1  O1  O 0 1 N N N N N N 150.132 154.979 183.029 4.007  2.108  -0.571 O1  A1ESA 25 
A1ESA O2  O2  O 0 1 N N N N N N 147.485 156.157 186.521 4.305  -1.935 1.168  O2  A1ESA 26 
A1ESA H1  H1  H 0 1 N N N N N N 149.755 152.904 187.609 8.804  0.985  -0.681 H1  A1ESA 27 
A1ESA H2  H2  H 0 1 N N N N N N 149.179 153.195 185.932 8.930  -0.641 0.033  H2  A1ESA 28 
A1ESA H3  H3  H 0 1 N N N N N N 150.772 152.414 186.212 8.259  -0.437 -1.603 H3  A1ESA 29 
A1ESA H14 H4  H 0 1 N N N N N N 145.693 153.248 181.473 -0.469 -0.176 -1.778 H14 A1ESA 30 
A1ESA H15 H5  H 0 1 N N N N N N 144.575 153.366 182.874 -0.349 -1.808 -1.077 H15 A1ESA 31 
A1ESA H16 H6  H 0 1 N N N N N N 142.419 154.307 182.570 -2.582 -2.412 -1.365 H16 A1ESA 32 
A1ESA H17 H7  H 0 1 N N N N N N 143.341 155.838 182.393 -2.878 -0.903 -2.262 H17 A1ESA 33 
A1ESA H18 H8  H 0 1 N N N N N N 141.006 155.956 181.507 -4.998 -1.807 -1.374 H18 A1ESA 34 
A1ESA H19 H9  H 0 1 N N N N N N 142.269 156.307 180.279 -4.325 -1.796 0.274  H19 A1ESA 35 
A1ESA H20 H10 H 0 1 N N N N N N 141.797 152.715 179.026 -3.792 0.346  1.333  H20 A1ESA 36 
A1ESA H21 H11 H 0 1 N N N N N N 142.814 154.148 178.655 -4.088 1.855  0.436  H21 A1ESA 37 
A1ESA H22 H12 H 0 1 N N N N N N 142.808 152.526 181.235 -2.345 1.239  -1.203 H22 A1ESA 38 
A1ESA H23 H13 H 0 1 N N N N N N 144.091 152.552 179.978 -1.671 1.251  0.445  H23 A1ESA 39 
A1ESA H24 H14 H 0 1 N N N N N N 137.989 153.148 177.527 -8.203 2.511  0.693  H24 A1ESA 40 
A1ESA H25 H15 H 0 1 N N N N N N 136.315 154.064 179.068 -9.551 0.470  1.130  H25 A1ESA 41 
A1ESA H26 H16 H 0 1 N N N N N N 137.109 155.175 181.107 -8.510 -1.752 0.744  H26 A1ESA 42 
A1ESA H27 H17 H 0 1 N N N N N N 152.428 155.498 187.530 7.502  1.748  1.320  H27 A1ESA 43 
A1ESA H28 H18 H 0 1 N N N N N N 151.618 154.256 188.543 6.028  0.875  1.804  H28 A1ESA 44 
A1ESA H29 H19 H 0 1 N N N N N N 152.661 153.754 187.170 7.624  0.117  2.024  H29 A1ESA 45 
A1ESA H4  H20 H 0 1 N N N N N N 151.778 155.825 185.232 6.509  2.069  -0.920 H4  A1ESA 46 
A1ESA H5  H21 H 0 1 N N N N N N 151.771 154.088 184.772 6.078  0.667  -1.930 H5  A1ESA 47 
A1ESA H6  H22 H 0 1 N N N N N N 150.281 156.550 187.184 6.251  -1.679 -0.921 H6  A1ESA 48 
A1ESA H7  H23 H 0 1 N N N N N N 149.336 155.283 188.038 6.798  -1.850 0.765  H7  A1ESA 49 
A1ESA H8  H24 H 0 1 N N N N N N 147.069 156.695 184.304 2.537  1.232  0.982  H8  A1ESA 50 
A1ESA H9  H25 H 0 1 N N N N N N 148.172 156.400 182.917 2.657  -0.400 1.683  H9  A1ESA 51 
A1ESA H10 H26 H 0 1 N N N N N N 147.588 154.028 182.926 1.927  0.245  -1.210 H10 A1ESA 52 
A1ESA H11 H27 H 0 1 N N N N N N 146.535 154.275 184.360 2.047  -1.387 -0.508 H11 A1ESA 53 
A1ESA H12 H28 H 0 1 N N N N N N 145.091 155.754 183.099 0.140  0.811  0.414  H12 A1ESA 54 
A1ESA H13 H29 H 0 1 N N N N N N 146.185 155.661 181.677 0.261  -0.821 1.115  H13 A1ESA 55 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
A1ESA C1  C2  SING N N 1  
A1ESA C2  C3  SING N N 2  
A1ESA C3  C4  SING N N 3  
A1ESA C4  O1  DOUB N N 4  
A1ESA C4  N1  SING N N 5  
A1ESA N1  C5  SING N N 6  
A1ESA C5  O2  DOUB N N 7  
A1ESA C5  C6  SING N N 8  
A1ESA N1  C7  SING N N 9  
A1ESA C7  C8  SING N N 10 
A1ESA C8  C9  SING N N 11 
A1ESA C9  C10 SING N N 12 
A1ESA C10 N2  SING N N 13 
A1ESA N2  C11 SING N N 14 
A1ESA C11 C12 SING N N 15 
A1ESA C12 N3  SING N N 16 
A1ESA N3  C13 SING N N 17 
A1ESA C13 C14 SING N N 18 
A1ESA N3  C15 SING N N 19 
A1ESA C15 N4  DOUB Y N 20 
A1ESA N4  C16 SING Y N 21 
A1ESA C16 C17 DOUB Y N 22 
A1ESA C17 C18 SING Y N 23 
A1ESA C18 N5  DOUB Y N 24 
A1ESA C2  C19 SING N N 25 
A1ESA C2  C6  SING N N 26 
A1ESA N2  C14 SING N N 27 
A1ESA C15 N5  SING Y N 28 
A1ESA C1  H1  SING N N 29 
A1ESA C1  H2  SING N N 30 
A1ESA C1  H3  SING N N 31 
A1ESA C10 H14 SING N N 32 
A1ESA C10 H15 SING N N 33 
A1ESA C11 H16 SING N N 34 
A1ESA C11 H17 SING N N 35 
A1ESA C12 H18 SING N N 36 
A1ESA C12 H19 SING N N 37 
A1ESA C13 H20 SING N N 38 
A1ESA C13 H21 SING N N 39 
A1ESA C14 H22 SING N N 40 
A1ESA C14 H23 SING N N 41 
A1ESA C16 H24 SING N N 42 
A1ESA C17 H25 SING N N 43 
A1ESA C18 H26 SING N N 44 
A1ESA C19 H27 SING N N 45 
A1ESA C19 H28 SING N N 46 
A1ESA C19 H29 SING N N 47 
A1ESA C3  H4  SING N N 48 
A1ESA C3  H5  SING N N 49 
A1ESA C6  H6  SING N N 50 
A1ESA C6  H7  SING N N 51 
A1ESA C7  H8  SING N N 52 
A1ESA C7  H9  SING N N 53 
A1ESA C8  H10 SING N N 54 
A1ESA C8  H11 SING N N 55 
A1ESA C9  H12 SING N N 56 
A1ESA C9  H13 SING N N 57 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
A1ESA InChI            InChI                1.06  "InChI=1S/C19H29N5O2/c1-19(2)14-16(25)24(17(26)15-19)9-4-3-8-22-10-12-23(13-11-22)18-20-6-5-7-21-18/h5-7H,3-4,8-15H2,1-2H3" 
A1ESA InChIKey         InChI                1.06  QOIGKGMMAGJZNZ-UHFFFAOYSA-N                                                                                                 
A1ESA SMILES_CANONICAL CACTVS               3.385 "CC1(C)CC(=O)N(CCCCN2CCN(CC2)c3ncccn3)C(=O)C1"                                                                              
A1ESA SMILES           CACTVS               3.385 "CC1(C)CC(=O)N(CCCCN2CCN(CC2)c3ncccn3)C(=O)C1"                                                                              
A1ESA SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC1(CC(=O)N(C(=O)C1)CCCCN2CCN(CC2)c3ncccn3)C"                                                                              
A1ESA SMILES           "OpenEye OEToolkits" 2.0.7 "CC1(CC(=O)N(C(=O)C1)CCCCN2CCN(CC2)c3ncccn3)C"                                                                              
# 
_pdbx_chem_comp_identifier.comp_id           A1ESA 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "4,4-dimethyl-1-[4-(4-pyrimidin-2-ylpiperazin-1-yl)butyl]piperidine-2,6-dione" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
A1ESA "Create component" 2025-06-24 PDBC 
A1ESA "Initial release"  2025-11-12 RCSB 
# 
