data_ELB
#

_chem_comp.id                                   ELB
_chem_comp.name                                 "4-(4-azanyl-2-oxidanylidene-3~{H}-benzimidazol-1-yl)-~{N}-(4-iodophenyl)piperidine-1-carboxamide"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C19 H20 I N5 O2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        TH5675
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2018-03-26
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       477.299
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    ELB
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6G3Y
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
ELB  C10  C1   C  0  1  N  N  N  4.740  14.462  29.308   -1.681   1.329  -1.173  C10  ELB   1  
ELB  C13  C2   C  0  1  N  N  N  3.878  13.574  26.673   -3.091   0.815   1.360  C13  ELB   2  
ELB  C17  C3   C  0  1  Y  N  N  4.936  10.607  31.253    2.391   0.748  -0.565  C17  ELB   3  
ELB  C20  C4   C  0  1  Y  N  N  5.524   8.108  32.233    5.030  -0.006  -0.210  C20  ELB   4  
ELB  C22  C5   C  0  1  Y  N  N  6.575   8.983  31.979    4.385  -0.288  -1.401  C22  ELB   5  
ELB  C24  C6   C  0  1  Y  N  N  6.140  12.083  25.394   -6.283   0.185  -0.126  C24  ELB   6  
ELB  C26  C7   C  0  1  Y  N  N  6.483   9.672  25.680   -8.312   1.384  -0.568  C26  ELB   7  
ELB  N01  N1   N  0  1  N  N  N  7.431  10.594  22.179   -9.137  -2.149   0.052  N01  ELB   8  
ELB  C02  C8   C  0  1  Y  N  N  6.981  10.706  23.534   -8.398  -0.973  -0.109  C02  ELB   9  
ELB  C03  C9   C  0  1  Y  N  N  6.578  11.968  24.067   -7.014  -0.992   0.036  C03  ELB  10  
ELB  N04  N2   N  0  1  N  N  N  6.536  13.276  23.469   -6.096  -2.000   0.332  N04  ELB  11  
ELB  C05  C10  C  0  1  N  N  N  6.060  14.182  24.439   -4.863  -1.458   0.348  C05  ELB  12  
ELB  O06  O1   O  0  1  N  N  N  5.908  15.369  24.242   -3.833  -2.065   0.574  O06  ELB  13  
ELB  N07  N3   N  0  1  N  N  N  5.784  13.481  25.645   -4.944  -0.142   0.076  N07  ELB  14  
ELB  C08  C11  C  0  1  N  N  N  5.303  14.121  26.894   -3.815   0.790   0.008  C08  ELB  15  
ELB  C09  C12  C  0  1  N  N  N  5.831  14.070  28.314   -2.843   0.335  -1.084  C09  ELB  16  
ELB  N11  N4   N  0  1  N  N  N  3.781  13.424  29.003   -1.072   1.469   0.156  N11  ELB  17  
ELB  C12  C13  C  0  1  N  N  N  2.936  13.777  27.879   -1.933   1.816   1.295  C12  ELB  18  
ELB  C14  C14  C  0  1  N  N  N  3.857  12.123  29.598    0.252   1.284   0.328  C14  ELB  19  
ELB  O15  O2   O  0  1  N  N  N  3.075  11.268  29.231    0.722   1.260   1.449  O15  ELB  20  
ELB  N16  N5   N  0  1  N  N  N  4.805  11.892  30.668    1.055   1.125  -0.742  N16  ELB  21  
ELB  C18  C15  C  0  1  Y  N  N  3.887   9.713  31.485    3.041   1.031   0.629  C18  ELB  22  
ELB  C19  C16  C  0  1  Y  N  N  4.195   8.460  31.991    4.358   0.653   0.803  C19  ELB  23  
ELB  I21  I1   I  0  1  N  N  N  5.960   6.202  32.979    7.028  -0.577   0.058  I21  ELB  24  
ELB  C23  C17  C  0  1  Y  N  N  6.272  10.233  31.466    3.069   0.087  -1.581  C23  ELB  25  
ELB  C25  C18  C  0  1  Y  N  N  6.088  10.911  26.213   -6.938   1.371  -0.425  C25  ELB  26  
ELB  C27  C19  C  0  1  Y  N  N  6.929   9.562  24.345   -9.042   0.218  -0.414  C27  ELB  27  
ELB  H1   H1   H  0  1  N  N  N  5.091  14.408  30.349   -0.937   0.958  -1.879  H1   ELB  28  
ELB  H2   H2   H  0  1  N  N  N  4.340  15.467  29.108   -2.053   2.296  -1.509  H2   ELB  29  
ELB  H3   H3   H  0  1  N  N  N  3.442  14.086  25.803   -3.789   1.117   2.140  H3   ELB  30  
ELB  H4   H4   H  0  1  N  N  N  3.949  12.496  26.467   -2.702  -0.178   1.583  H4   ELB  31  
ELB  H5   H5   H  0  1  N  N  N  7.597   8.696  32.176    4.913  -0.802  -2.192  H5   ELB  32  
ELB  H6   H6   H  0  1  N  N  N  6.445   8.790  26.302   -8.819   2.308  -0.800  H6   ELB  33  
ELB  H7   H7   H  0  1  N  N  N  7.669   9.643  21.984   -8.685  -2.981   0.265  H7   ELB  34  
ELB  H8   H8   H  0  1  N  N  N  6.702  10.889  21.561  -10.102  -2.134  -0.049  H8   ELB  35  
ELB  H9   H9   H  0  1  N  N  N  6.798  13.503  22.531   -6.309  -2.931   0.497  H9   ELB  36  
ELB  H10  H10  H  0  1  N  N  N  5.228  15.193  26.659   -4.182   1.789  -0.226  H10  ELB  37  
ELB  H11  H11  H  0  1  N  N  N  6.172  13.048  28.536   -3.363   0.296  -2.041  H11  ELB  38  
ELB  H12  H12  H  0  1  N  N  N  6.676  14.768  28.411   -2.458  -0.655  -0.838  H12  ELB  39  
ELB  H13  H13  H  0  1  N  N  N  2.599  14.822  27.948   -2.328   2.823   1.162  H13  ELB  40  
ELB  H14  H14  H  0  1  N  N  N  2.061  13.113  27.816   -1.355   1.766   2.218  H14  ELB  41  
ELB  H15  H15  H  0  1  N  N  N  5.373  12.646  30.998    0.707   1.271  -1.636  H15  ELB  42  
ELB  H16  H16  H  0  1  N  N  N  2.865   9.991  31.276    2.517   1.545   1.421  H16  ELB  43  
ELB  H17  H17  H  0  1  N  N  N  3.405   7.754  32.199    4.864   0.872   1.732  H17  ELB  44  
ELB  H18  H18  H  0  1  N  N  N  7.068  10.924  31.229    2.566  -0.134  -2.511  H18  ELB  45  
ELB  H19  H19  H  0  1  N  N  N  5.747  10.978  27.236   -6.374   2.284  -0.546  H19  ELB  46  
ELB  H20  H20  H  0  1  N  N  N  7.229   8.602  23.950  -10.115   0.236  -0.527  H20  ELB  47  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
ELB  N01  C02  SING  N  N   1  
ELB  N04  C03  SING  N  N   2  
ELB  N04  C05  SING  N  N   3  
ELB  C02  C03  DOUB  Y  N   4  
ELB  C02  C27  SING  Y  N   5  
ELB  C03  C24  SING  Y  N   6  
ELB  O06  C05  DOUB  N  N   7  
ELB  C27  C26  DOUB  Y  N   8  
ELB  C05  N07  SING  N  N   9  
ELB  C24  N07  SING  N  N  10  
ELB  C24  C25  DOUB  Y  N  11  
ELB  N07  C08  SING  N  N  12  
ELB  C26  C25  SING  Y  N  13  
ELB  C13  C08  SING  N  N  14  
ELB  C13  C12  SING  N  N  15  
ELB  C08  C09  SING  N  N  16  
ELB  C12  N11  SING  N  N  17  
ELB  C09  C10  SING  N  N  18  
ELB  N11  C10  SING  N  N  19  
ELB  N11  C14  SING  N  N  20  
ELB  O15  C14  DOUB  N  N  21  
ELB  C14  N16  SING  N  N  22  
ELB  N16  C17  SING  N  N  23  
ELB  C17  C23  DOUB  Y  N  24  
ELB  C17  C18  SING  Y  N  25  
ELB  C23  C22  SING  Y  N  26  
ELB  C18  C19  DOUB  Y  N  27  
ELB  C22  C20  DOUB  Y  N  28  
ELB  C19  C20  SING  Y  N  29  
ELB  C20  I21  SING  N  N  30  
ELB  C10  H1   SING  N  N  31  
ELB  C10  H2   SING  N  N  32  
ELB  C13  H3   SING  N  N  33  
ELB  C13  H4   SING  N  N  34  
ELB  C22  H5   SING  N  N  35  
ELB  C26  H6   SING  N  N  36  
ELB  N01  H7   SING  N  N  37  
ELB  N01  H8   SING  N  N  38  
ELB  N04  H9   SING  N  N  39  
ELB  C08  H10  SING  N  N  40  
ELB  C09  H11  SING  N  N  41  
ELB  C09  H12  SING  N  N  42  
ELB  C12  H13  SING  N  N  43  
ELB  C12  H14  SING  N  N  44  
ELB  N16  H15  SING  N  N  45  
ELB  C18  H16  SING  N  N  46  
ELB  C19  H17  SING  N  N  47  
ELB  C23  H18  SING  N  N  48  
ELB  C25  H19  SING  N  N  49  
ELB  C27  H20  SING  N  N  50  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
ELB  InChI             InChI                 1.03   "InChI=1S/C19H20IN5O2/c20-12-4-6-13(7-5-12)22-18(26)24-10-8-14(9-11-24)25-16-3-1-2-15(21)17(16)23-19(25)27/h1-7,14H,8-11,21H2,(H,22,26)(H,23,27)"  
ELB  InChIKey          InChI                 1.03   MCANHWLZFZFTAQ-UHFFFAOYSA-N  
ELB  SMILES_CANONICAL  CACTVS                3.385  "Nc1cccc2N(C3CCN(CC3)C(=O)Nc4ccc(I)cc4)C(=O)Nc12"  
ELB  SMILES            CACTVS                3.385  "Nc1cccc2N(C3CCN(CC3)C(=O)Nc4ccc(I)cc4)C(=O)Nc12"  
ELB  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "c1cc(c2c(c1)N(C(=O)N2)C3CCN(CC3)C(=O)Nc4ccc(cc4)I)N"  
ELB  SMILES            "OpenEye OEToolkits"  2.0.6  "c1cc(c2c(c1)N(C(=O)N2)C3CCN(CC3)C(=O)Nc4ccc(cc4)I)N"  
#
_pdbx_chem_comp_identifier.comp_id          ELB
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.6
_pdbx_chem_comp_identifier.identifier       "4-(4-azanyl-2-oxidanylidene-3~{H}-benzimidazol-1-yl)-~{N}-(4-iodophenyl)piperidine-1-carboxamide"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
ELB  "Create component"  2018-03-26  EBI   
ELB  "Initial release"   2018-11-28  RCSB  
ELB  "Modify synonyms"   2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     ELB
_pdbx_chem_comp_synonyms.name        TH5675
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
