data_YBB
# 
_chem_comp.id                                    YBB 
_chem_comp.name                                  "4-(pyrrolidin-1-yl)-3-{(E)-2-[4-(trifluoromethoxy)phenyl]ethenyl}benzamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C20 H19 F3 N2 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-06-12 
_chem_comp.pdbx_modified_date                    2024-12-13 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        376.372 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     YBB 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7G65 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
YBB C10 C1  C 0 1 Y N N N N N -13.135 8.063  45.252 -2.386 0.204  0.008  C10 YBB 1  
YBB C11 C2  C 0 1 Y N N N N N -14.199 7.877  46.167 -2.714 1.557  0.006  C11 YBB 2  
YBB C13 C3  C 0 1 Y N N N N N -14.183 10.273 46.740 -5.063 0.975  0.002  C13 YBB 3  
YBB C15 C4  C 0 1 Y N N N N N -12.586 9.379  45.108 -3.408 -0.762 0.008  C15 YBB 4  
YBB C17 C5  C 0 1 N N N N N N -15.814 8.692  47.747 -4.408 3.377  0.001  C17 YBB 5  
YBB C20 C6  C 0 1 N N N N N N -10.255 1.044  41.448 6.357  0.156  -0.004 C20 YBB 6  
YBB C24 C7  C 0 1 N N N N N N -10.568 10.677 44.395 -3.635 -2.789 -1.186 C24 YBB 7  
YBB C25 C8  C 0 1 N N N N N N -9.795  10.744 43.090 -4.025 -4.216 -0.758 C25 YBB 8  
YBB C26 C9  C 0 1 N N N N N N -10.578 9.900  42.067 -3.694 -4.291 0.750  C26 YBB 9  
YBB C27 C10 C 0 1 N N N N N N -11.865 9.521  42.757 -3.693 -2.802 1.178  C27 YBB 10 
YBB C1  C11 C 0 1 Y N N N N N -10.564 3.925  42.427 3.065  -1.453 -0.003 C1  YBB 11 
YBB C2  C12 C 0 1 Y N N N N N -10.970 2.683  42.995 4.071  -0.495 -0.002 C2  YBB 12 
YBB C3  C13 C 0 1 Y N N N N N -12.096 2.517  43.800 3.749  0.856  0.000  C3  YBB 13 
YBB C4  C14 C 0 1 Y N N N N N -12.832 3.661  44.062 2.429  1.252  0.003  C4  YBB 14 
YBB C5  C15 C 0 1 Y N N N N N -12.474 4.882  43.521 1.413  0.292  0.002  C5  YBB 15 
YBB C6  C16 C 0 1 Y N N N N N -11.313 5.034  42.724 1.742  -1.067 -0.000 C6  YBB 16 
YBB O7  O1  O 0 1 N N N N N N -10.137 1.635  42.663 5.373  -0.881 -0.004 O7  YBB 17 
YBB C8  C17 C 0 1 N N N N N N -13.282 5.966  43.929 0.001  0.710  0.005  C8  YBB 18 
YBB C9  C18 C 0 1 N N N N N N -12.625 6.881  44.594 -0.974 -0.214 0.005  C9  YBB 19 
YBB C12 C19 C 0 1 Y N N N N N -14.692 8.963  46.878 -4.054 1.944  0.003  C12 YBB 20 
YBB C14 C20 C 0 1 Y N N N N N -13.135 10.484 45.859 -4.740 -0.364 0.005  C14 YBB 21 
YBB N16 N1  N 0 1 N N N N N N -11.500 9.570  44.173 -3.088 -2.112 0.010  N16 YBB 22 
YBB O18 O2  O 0 1 N N N N N N -16.565 7.749  47.518 -3.531 4.219  0.001  O18 YBB 23 
YBB N19 N2  N 0 1 N N N N N N -16.006 9.580  48.807 -5.703 3.751  -0.002 N19 YBB 24 
YBB F21 F1  F 0 1 N N N N N N -9.406  -0.010 41.452 6.201  0.947  1.140  F21 YBB 25 
YBB F22 F2  F 0 1 N N N N N N -11.499 0.628  41.185 7.635  -0.413 -0.006 F22 YBB 26 
YBB F23 F3  F 0 1 N N N N N N -9.971  1.900  40.475 6.198  0.950  -1.145 F23 YBB 27 
YBB H34 H1  H 0 1 N N N N N N -14.625 6.895  46.311 -1.934 2.304  0.006  H34 YBB 28 
YBB H35 H2  H 0 1 N N N N N N -14.601 11.091 47.308 -6.100 1.277  0.001  H35 YBB 29 
YBB H40 H3  H 0 1 N N N N N N -11.108 11.617 44.582 -2.878 -2.830 -1.969 H40 YBB 30 
YBB H39 H4  H 0 1 N N N N N N -9.897  10.465 45.241 -4.515 -2.257 -1.547 H39 YBB 31 
YBB H41 H5  H 0 1 N N N N N N -9.723  11.786 42.745 -5.089 -4.383 -0.921 H41 YBB 32 
YBB H42 H6  H 0 1 N N N N N N -8.784  10.332 43.227 -3.438 -4.950 -1.311 H42 YBB 33 
YBB H44 H7  H 0 1 N N N N N N -10.786 10.489 41.162 -4.464 -4.846 1.287  H44 YBB 34 
YBB H43 H8  H 0 1 N N N N N N -10.008 8.999  41.795 -2.713 -4.738 0.908  H43 YBB 35 
YBB H46 H9  H 0 1 N N N N N N -12.188 8.511  42.466 -4.711 -2.449 1.348  H46 YBB 36 
YBB H45 H10 H 0 1 N N N N N N -12.664 10.242 42.529 -3.084 -2.658 2.071  H45 YBB 37 
YBB H28 H11 H 0 1 N N N N N N -9.698  3.990  41.786 3.320  -2.502 -0.009 H28 YBB 38 
YBB H29 H12 H 0 1 N N N N N N -12.378 1.553  44.196 4.534  1.598  0.001  H29 YBB 39 
YBB H30 H13 H 0 1 N N N N N N -13.701 3.598  44.700 2.180  2.303  0.005  H30 YBB 40 
YBB H31 H14 H 0 1 N N N N N N -11.023 6.007  42.356 0.961  -1.812 -0.000 H31 YBB 41 
YBB H32 H15 H 0 1 N N N N N N -14.338 6.033  43.713 -0.252 1.760  0.008  H32 YBB 42 
YBB H33 H16 H 0 1 N N N N N N -11.557 6.734  44.661 -0.721 -1.265 0.003  H33 YBB 43 
YBB H36 H17 H 0 1 N N N N N N -12.728 11.476 45.733 -5.524 -1.107 0.005  H36 YBB 44 
YBB H37 H18 H 0 1 N N N N N N -16.785 9.463  49.423 -5.935 4.693  -0.004 H37 YBB 45 
YBB H38 H19 H 0 1 N N N N N N -15.364 10.333 48.951 -6.402 3.079  -0.003 H38 YBB 46 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
YBB C1  C2  DOUB Y N 1  
YBB C1  C6  SING Y N 2  
YBB C2  O7  SING N N 3  
YBB C2  C3  SING Y N 4  
YBB C3  C4  DOUB Y N 5  
YBB C4  C5  SING Y N 6  
YBB C5  C8  SING N N 7  
YBB C5  C6  DOUB Y N 8  
YBB O7  C20 SING N N 9  
YBB C8  C9  DOUB N E 10 
YBB C9  C10 SING N N 11 
YBB C10 C15 DOUB Y N 12 
YBB C10 C11 SING Y N 13 
YBB C11 C12 DOUB Y N 14 
YBB C12 C17 SING N N 15 
YBB C12 C13 SING Y N 16 
YBB C13 C14 DOUB Y N 17 
YBB C14 C15 SING Y N 18 
YBB C15 N16 SING N N 19 
YBB N16 C24 SING N N 20 
YBB N16 C27 SING N N 21 
YBB C17 O18 DOUB N N 22 
YBB C17 N19 SING N N 23 
YBB C20 F21 SING N N 24 
YBB C20 F22 SING N N 25 
YBB C20 F23 SING N N 26 
YBB C24 C25 SING N N 27 
YBB C25 C26 SING N N 28 
YBB C26 C27 SING N N 29 
YBB C11 H34 SING N N 30 
YBB C13 H35 SING N N 31 
YBB C24 H40 SING N N 32 
YBB C24 H39 SING N N 33 
YBB C25 H41 SING N N 34 
YBB C25 H42 SING N N 35 
YBB C26 H44 SING N N 36 
YBB C26 H43 SING N N 37 
YBB C27 H46 SING N N 38 
YBB C27 H45 SING N N 39 
YBB C1  H28 SING N N 40 
YBB C3  H29 SING N N 41 
YBB C4  H30 SING N N 42 
YBB C6  H31 SING N N 43 
YBB C8  H32 SING N N 44 
YBB C9  H33 SING N N 45 
YBB C14 H36 SING N N 46 
YBB N19 H37 SING N N 47 
YBB N19 H38 SING N N 48 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
YBB SMILES           ACDLabs              12.01 "FC(F)(F)Oc1ccc(cc1)/C=C/c1cc(ccc1N1CCCC1)C(N)=O"                                                                                          
YBB InChI            InChI                1.06  "InChI=1S/C20H19F3N2O2/c21-20(22,23)27-17-8-4-14(5-9-17)3-6-15-13-16(19(24)26)7-10-18(15)25-11-1-2-12-25/h3-10,13H,1-2,11-12H2,(H2,24,26)" 
YBB InChIKey         InChI                1.06  QQRLGTQPIXISFJ-UHFFFAOYSA-N                                                                                                                
YBB SMILES_CANONICAL CACTVS               3.385 "NC(=O)c1ccc(N2CCCC2)c(/C=C/c3ccc(OC(F)(F)F)cc3)c1"                                                                                        
YBB SMILES           CACTVS               3.385 "NC(=O)c1ccc(N2CCCC2)c(C=Cc3ccc(OC(F)(F)F)cc3)c1"                                                                                          
YBB SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1/C=C/c2cc(ccc2N3CCCC3)C(=O)N)OC(F)(F)F"                                                                                          
YBB SMILES           "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1C=Cc2cc(ccc2N3CCCC3)C(=O)N)OC(F)(F)F"                                                                                            
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
YBB "SYSTEMATIC NAME" ACDLabs              12.01 "4-(pyrrolidin-1-yl)-3-{(E)-2-[4-(trifluoromethoxy)phenyl]ethenyl}benzamide"    
YBB "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "4-pyrrolidin-1-yl-3-[(~{E})-2-[4-(trifluoromethyloxy)phenyl]ethenyl]benzamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
YBB "Create component" 2023-06-12 RCSB 
YBB "Initial release"  2024-12-18 RCSB 
# 
