data_A1AMC
# 
_chem_comp.id                                    A1AMC 
_chem_comp.name                                  "(2S)-2-(methylamino)pentane-1,1,5-triol" 
_chem_comp.type                                  "L-peptide linking" 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C6 H13 N O3" 
_chem_comp.mon_nstd_parent_comp_id               ALA 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2024-04-11 
_chem_comp.pdbx_modified_date                    2025-12-05 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        147.172 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     A1AMC 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   Y 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        9BBJ 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
A1AMC C1  C1  C 0 1 N N N N N N -8.860 -13.316 -6.306 -1.553 2.386  -0.423 C1  A1AMC 1  
A1AMC N   N1  N 0 1 N N N Y Y N -9.211 -13.980 -5.052 -0.795 1.421  0.386  N   A1AMC 2  
A1AMC CA  C2  C 0 1 N N S N Y N -8.136 -14.649 -4.200 -0.699 0.124  -0.296 CA  A1AMC 3  
A1AMC C   C3  C 0 1 N N N N Y Y -8.410 -16.162 -4.063 -1.931 -0.693 0.001  C   A1AMC 4  
A1AMC O   O1  O 0 1 N N N N Y Y -9.488 -16.449 -4.922 -2.799 -0.240 0.708  O   A1AMC 5  
A1AMC CB  C4  C 0 1 N N N N N N -8.051 -13.921 -2.993 0.540  -0.623 0.201  CB  A1AMC 6  
A1AMC CG  C5  C 0 1 N N N N N N -7.440 -14.680 -1.934 1.798  0.145  -0.210 CG  A1AMC 7  
A1AMC CD  C6  C 0 1 N N N N N N -8.171 -16.010 -1.622 3.037  -0.602 0.287  CD  A1AMC 8  
A1AMC OXT O2  O 0 1 N Y N N Y Y -8.793 -16.595 -2.762 -2.062 -1.923 -0.521 OXT A1AMC 9  
A1AMC H1  H1  H 0 1 N N N N N N -9.768 -12.900 -6.768 -1.052 2.530  -1.380 H1  A1AMC 10 
A1AMC H4  H2  H 0 1 N N N N N N -8.146 -12.504 -6.103 -2.560 2.005  -0.594 H4  A1AMC 11 
A1AMC H3  H3  H 0 1 N N N N N N -8.402 -14.045 -6.991 -1.609 3.338  0.105  H3  A1AMC 12 
A1AMC H   H4  H 0 1 N N N Y Y N -9.645 -13.289 -4.474 0.120  1.779  0.612  H   A1AMC 13 
A1AMC HA  H6  H 0 1 N N N N Y N -7.183 -14.544 -4.740 -0.620 0.283  -1.372 HA  A1AMC 14 
A1AMC HB1 H8  H 0 1 N N N N N N -7.452 -13.015 -3.169 0.503  -0.705 1.288  HB1 A1AMC 15 
A1AMC HB2 H9  H 0 1 N N N N N N -9.066 -13.635 -2.681 0.563  -1.621 -0.237 HB2 A1AMC 16 
A1AMC H10 H10 H 0 1 N N N N N N -6.405 -14.912 -2.225 1.834  0.226  -1.297 H10 A1AMC 17 
A1AMC H11 H11 H 0 1 N N N N N N -7.435 -14.064 -1.023 1.774  1.142  0.228  H11 A1AMC 18 
A1AMC H12 H12 H 0 1 N N N N N N -9.260 -16.157 -1.679 3.000  -0.684 1.374  H12 A1AMC 19 
A1AMC H13 H13 H 0 1 N N N N N N -7.676 -16.984 -1.494 3.060  -1.600 -0.151 H13 A1AMC 20 
A1AMC HXT H15 H 0 1 N N N N Y Y -9.668 -16.965 -2.795 -2.870 -2.408 -0.302 HXT A1AMC 21 
A1AMC OE  OE  O 0 1 N Y N N N N ?      ?       ?      4.212  0.115  -0.097 OE  A1AMC 22 
A1AMC H5  H5  H 0 1 N N N N N N ?      ?       ?      5.037  -0.302 0.186  H5  A1AMC 23 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
A1AMC C1  N   SING N N 1  
A1AMC N   CA  SING N N 2  
A1AMC O   C   DOUB N N 3  
A1AMC CA  C   SING N N 4  
A1AMC CA  CB  SING N N 5  
A1AMC CB  CG  SING N N 6  
A1AMC CG  CD  SING N N 7  
A1AMC C   OXT SING N N 8  
A1AMC C1  H1  SING N N 9  
A1AMC C1  H4  SING N N 10 
A1AMC C1  H3  SING N N 11 
A1AMC N   H   SING N N 12 
A1AMC CA  HA  SING N N 13 
A1AMC CB  HB1 SING N N 14 
A1AMC CB  HB2 SING N N 15 
A1AMC CG  H10 SING N N 16 
A1AMC CG  H11 SING N N 17 
A1AMC CD  H12 SING N N 18 
A1AMC CD  H13 SING N N 19 
A1AMC OXT HXT SING N N 20 
A1AMC CD  OE  SING N N 21 
A1AMC OE  H5  SING N N 22 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
A1AMC SMILES           ACDLabs              12.01 "OC(=O)C(NC)CCCO"                                                              
A1AMC InChI            InChI                1.06  "InChI=1S/C6H13NO3/c1-7-5(6(9)10)3-2-4-8/h5,7-8H,2-4H2,1H3,(H,9,10)/t5-/m0/s1" 
A1AMC InChIKey         InChI                1.06  CJTSVYBCJVYBFR-YFKPBYRVSA-N                                                    
A1AMC SMILES_CANONICAL CACTVS               3.385 "CN[C@@H](CCCO)C(O)=O"                                                         
A1AMC SMILES           CACTVS               3.385 "CN[CH](CCCO)C(O)=O"                                                           
A1AMC SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN[C@@H](CCCO)C(=O)O"                                                         
A1AMC SMILES           "OpenEye OEToolkits" 2.0.7 "CNC(CCCO)C(=O)O"                                                              
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
A1AMC "SYSTEMATIC NAME" ACDLabs              12.01 5-hydroxy-N-methyl-L-norvaline                      
A1AMC "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S})-2-(methylamino)-5-oxidanyl-pentanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
A1AMC "Create component" 2024-04-11 RCSB 
A1AMC "Modify PCM"       2024-09-27 PDBE 
A1AMC "Initial release"  2025-12-10 RCSB 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            A1AMC 
_pdbx_chem_comp_pcm.modified_residue_id                ? 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Non-standard residue" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain and backbone" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               ? 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   ? 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
