data_A1IPC
# 
_chem_comp.id                                    A1IPC 
_chem_comp.name                                  "(2~{S},3~{S},4~{S},5~{S})-2-heptyl-5-(hydroxymethyl)pyrrolidine-3,4-diol" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C12 H25 N O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2024-09-20 
_chem_comp.pdbx_modified_date                    2025-09-26 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        231.332 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     A1IPC 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        9GTW 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
A1IPC C2  C1  C 0 1 N N S N N N -14.061 -30.801 96.810  3.484  0.386  0.284  C2  A1IPC 1  
A1IPC C3  C2  C 0 1 N N S N N N -15.481 -31.347 96.782  2.461  1.521  0.048  C3  A1IPC 2  
A1IPC C5  C3  C 0 1 N N S N N N -15.507 -32.307 95.613  1.266  0.846  -0.651 C5  A1IPC 3  
A1IPC O3  O1  O 0 1 N N N N N N -16.479 -30.323 96.608  3.025  2.530  -0.793 O3  A1IPC 4  
A1IPC O2  O2  O 0 1 N N N N N N -13.533 -30.598 98.127  4.108  0.525  1.562  O2  A1IPC 5  
A1IPC N5  N1  N 0 1 N N N N N N -14.144 -32.283 94.966  1.614  -0.581 -0.824 N5  A1IPC 6  
A1IPC C1  C4  C 0 1 N N S N N N -13.212 -31.760 95.990  2.608  -0.891 0.237  C1  A1IPC 7  
A1IPC C19 C5  C 0 1 N N N N N N -12.016 -31.139 95.334  3.444  -2.114 -0.146 C19 A1IPC 8  
A1IPC O20 O3  O 0 1 N N N N N N -11.378 -32.044 94.416  2.609  -3.273 -0.173 O20 A1IPC 9  
A1IPC C12 C6  C 0 1 N N N N N N -15.889 -33.714 96.052  0.014  0.975  0.219  C12 A1IPC 10 
A1IPC C13 C7  C 0 1 N N N N N N -14.871 -34.488 96.882  -1.192 0.414  -0.537 C13 A1IPC 11 
A1IPC C14 C8  C 0 1 N N N N N N -15.343 -35.949 96.977  -2.445 0.543  0.332  C14 A1IPC 12 
A1IPC C15 C9  C 0 1 N N N N N N -14.386 -36.847 97.761  -3.650 -0.019 -0.424 C15 A1IPC 13 
A1IPC C16 C10 C 0 1 N N N N N N -14.468 -36.603 99.260  -4.903 0.110  0.445  C16 A1IPC 14 
A1IPC C17 C11 C 0 1 N N N N N N -15.404 -37.597 99.938  -6.108 -0.452 -0.311 C17 A1IPC 15 
A1IPC C18 C12 C 0 1 N N N N N N -15.497 -37.310 101.425 -7.361 -0.323 0.559  C18 A1IPC 16 
A1IPC H1  H1  H 0 1 N N N N N N -14.069 -29.835 96.284  4.232  0.370  -0.509 H1  A1IPC 17 
A1IPC H2  H2  H 0 1 N N N N N N -15.669 -31.905 97.711  2.149  1.953  0.999  H2  A1IPC 18 
A1IPC H3  H3  H 0 1 N N N N N N -16.251 -31.954 94.883  1.093  1.310  -1.622 H3  A1IPC 19 
A1IPC H4  H4  H 0 1 N N N N N N -16.454 -29.727 97.347  3.807  2.959  -0.421 H4  A1IPC 20 
A1IPC H5  H5  H 0 1 N N N N N N -14.092 -29.995 98.603  4.638  1.329  1.655  H5  A1IPC 21 
A1IPC H6  H6  H 0 1 N N N N N N -13.874 -33.206 94.690  0.796  -1.165 -0.737 H6  A1IPC 22 
A1IPC H8  H8  H 0 1 N N N N N N -12.881 -32.585 96.638  2.112  -1.048 1.195  H8  A1IPC 23 
A1IPC H9  H9  H 0 1 N N N N N N -11.293 -30.852 96.112  3.882  -1.959 -1.132 H9  A1IPC 24 
A1IPC H10 H10 H 0 1 N N N N N N -12.338 -30.242 94.784  4.238  -2.255 0.587  H10 A1IPC 25 
A1IPC H11 H11 H 0 1 N N N N N N -10.627 -31.617 94.021  3.073  -4.087 -0.409 H11 A1IPC 26 
A1IPC H12 H12 H 0 1 N N N N N N -16.810 -33.636 96.648  0.154  0.417  1.144  H12 A1IPC 27 
A1IPC H13 H13 H 0 1 N N N N N N -16.089 -34.301 95.143  -0.161 2.026  0.451  H13 A1IPC 28 
A1IPC H14 H14 H 0 1 N N N N N N -13.885 -34.446 96.397  -1.333 0.972  -1.463 H14 A1IPC 29 
A1IPC H15 H15 H 0 1 N N N N N N -14.803 -34.052 97.890  -1.018 -0.637 -0.770 H15 A1IPC 30 
A1IPC H16 H16 H 0 1 N N N N N N -16.324 -35.967 97.474  -2.304 -0.016 1.257  H16 A1IPC 31 
A1IPC H17 H17 H 0 1 N N N N N N -15.441 -36.350 95.958  -2.619 1.593  0.564  H17 A1IPC 32 
A1IPC H18 H18 H 0 1 N N N N N N -14.640 -37.898 97.559  -3.791 0.539  -1.349 H18 A1IPC 33 
A1IPC H19 H19 H 0 1 N N N N N N -13.358 -36.647 97.425  -3.476 -1.070 -0.657 H19 A1IPC 34 
A1IPC H20 H20 H 0 1 N N N N N N -13.463 -36.706 99.694  -4.762 -0.449 1.371  H20 A1IPC 35 
A1IPC H21 H21 H 0 1 N N N N N N -14.841 -35.583 99.436  -5.077 1.160  0.678  H21 A1IPC 36 
A1IPC H22 H22 H 0 1 N N N N N N -16.405 -37.515 99.490  -6.249 0.106  -1.236 H22 A1IPC 37 
A1IPC H23 H23 H 0 1 N N N N N N -15.018 -38.616 99.789  -5.934 -1.503 -0.543 H23 A1IPC 38 
A1IPC H24 H24 H 0 1 N N N N N N -16.175 -38.036 101.897 -7.220 -0.882 1.484  H24 A1IPC 39 
A1IPC H25 H25 H 0 1 N N N N N N -14.498 -37.394 101.878 -7.535 0.728  0.791  H25 A1IPC 40 
A1IPC H26 H26 H 0 1 N N N N N N -15.885 -36.292 101.578 -8.220 -0.723 0.020  H26 A1IPC 41 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
A1IPC O20 C19 SING N N 1  
A1IPC N5  C5  SING N N 2  
A1IPC N5  C1  SING N N 3  
A1IPC C19 C1  SING N N 4  
A1IPC C5  C12 SING N N 5  
A1IPC C5  C3  SING N N 6  
A1IPC C1  C2  SING N N 7  
A1IPC C12 C13 SING N N 8  
A1IPC O3  C3  SING N N 9  
A1IPC C3  C2  SING N N 10 
A1IPC C2  O2  SING N N 11 
A1IPC C13 C14 SING N N 12 
A1IPC C14 C15 SING N N 13 
A1IPC C15 C16 SING N N 14 
A1IPC C16 C17 SING N N 15 
A1IPC C17 C18 SING N N 16 
A1IPC C2  H1  SING N N 17 
A1IPC C3  H2  SING N N 18 
A1IPC C5  H3  SING N N 19 
A1IPC O3  H4  SING N N 20 
A1IPC O2  H5  SING N N 21 
A1IPC N5  H6  SING N N 22 
A1IPC C1  H8  SING N N 23 
A1IPC C19 H9  SING N N 24 
A1IPC C19 H10 SING N N 25 
A1IPC O20 H11 SING N N 26 
A1IPC C12 H12 SING N N 27 
A1IPC C12 H13 SING N N 28 
A1IPC C13 H14 SING N N 29 
A1IPC C13 H15 SING N N 30 
A1IPC C14 H16 SING N N 31 
A1IPC C14 H17 SING N N 32 
A1IPC C15 H18 SING N N 33 
A1IPC C15 H19 SING N N 34 
A1IPC C16 H20 SING N N 35 
A1IPC C16 H21 SING N N 36 
A1IPC C17 H22 SING N N 37 
A1IPC C17 H23 SING N N 38 
A1IPC C18 H24 SING N N 39 
A1IPC C18 H25 SING N N 40 
A1IPC C18 H26 SING N N 41 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
A1IPC InChI            InChI                1.06  "InChI=1S/C12H25NO3/c1-2-3-4-5-6-7-9-11(15)12(16)10(8-14)13-9/h9-16H,2-8H2,1H3/t9-,10-,11-,12-/m0/s1" 
A1IPC InChIKey         InChI                1.06  ZHCDSIQDIBIMCV-BJDJZHNGSA-N                                                                           
A1IPC SMILES_CANONICAL CACTVS               3.385 "CCCCCCC[C@@H]1N[C@@H](CO)[C@H](O)[C@H]1O"                                                            
A1IPC SMILES           CACTVS               3.385 "CCCCCCC[CH]1N[CH](CO)[CH](O)[CH]1O"                                                                  
A1IPC SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCCCCC[C@H]1[C@@H]([C@H]([C@@H](N1)CO)O)O"                                                          
A1IPC SMILES           "OpenEye OEToolkits" 2.0.7 "CCCCCCCC1C(C(C(N1)CO)O)O"                                                                            
# 
_pdbx_chem_comp_identifier.comp_id           A1IPC 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(2~{S},3~{S},4~{S},5~{S})-2-heptyl-5-(hydroxymethyl)pyrrolidine-3,4-diol" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
A1IPC "Create component" 2024-09-20 PDBE 
A1IPC "Initial release"  2025-10-01 RCSB 
# 
