data_A1ITC
# 
_chem_comp.id                                    A1ITC 
_chem_comp.name                                  "6-(1-methylbenzimidazol-4-yl)-3-[(4-morpholin-4-ylphenyl)amino]pyrazine-2-carboxamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C23 H23 N7 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2024-10-29 
_chem_comp.pdbx_modified_date                    2025-02-14 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        429.474 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     A1ITC 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        9H8D 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
A1ITC C1  C1  C 0 1 Y N N N N N 15.913 5.833  13.583 -6.590 0.696  0.018  C1  A1ITC 1  
A1ITC C2  C2  C 0 1 Y N N N N N 15.975 5.965  15.701 -4.865 -0.626 0.029  C2  A1ITC 2  
A1ITC C3  C3  C 0 1 Y N N N N N 14.799 5.289  15.385 -6.012 -1.435 0.034  C3  A1ITC 3  
A1ITC N6  N1  N 0 1 N N N N N N 24.834 12.114 16.569 6.031  -0.582 -0.415 N6  A1ITC 4  
A1ITC C7  C4  C 0 1 Y N N N N N 16.274 6.208  17.057 -3.593 -1.229 0.034  C7  A1ITC 5  
A1ITC C8  C5  C 0 1 Y N N N N N 17.526 6.894  17.475 -2.371 -0.394 0.029  C8  A1ITC 6  
A1ITC C9  C6  C 0 1 Y N N N N N 18.140 7.950  16.761 -1.109 -1.000 0.029  C9  A1ITC 7  
A1ITC C10 C7  C 0 1 Y N N N N N 19.835 8.038  18.281 -0.111 1.065  0.020  C10 A1ITC 8  
A1ITC C11 C8  C 0 1 Y N N N N N 19.245 6.984  19.002 -1.374 1.678  0.015  C11 A1ITC 9  
A1ITC C12 C9  C 0 1 N N N N N N 19.833 6.400  20.268 -1.483 3.151  0.004  C12 A1ITC 10 
A1ITC C13 C10 C 0 1 Y N N N N N 21.947 9.479  18.175 2.291  1.231  -0.094 C13 A1ITC 11 
A1ITC C14 C11 C 0 1 Y N N N N N 21.675 10.202 17.020 2.406  -0.025 -0.675 C14 A1ITC 12 
A1ITC C15 C12 C 0 1 Y N N N N N 22.618 11.067 16.497 3.645  -0.626 -0.782 C15 A1ITC 13 
A1ITC C16 C13 C 0 1 Y N N N N N 23.861 11.231 17.113 4.776  0.026  -0.307 C16 A1ITC 14 
A1ITC C19 C14 C 0 1 N N N N N N 26.235 11.765 16.871 7.083  0.277  0.147  C19 A1ITC 15 
A1ITC C20 C15 C 0 1 N N N N N N 27.191 12.797 16.307 8.444  -0.399 -0.045 C20 A1ITC 16 
A1ITC C21 C16 C 0 1 N N N N N N 25.643 13.436 14.657 7.405  -2.556 0.041  C21 A1ITC 17 
A1ITC C22 C17 C 0 1 N N N N N N 24.638 12.416 15.138 6.035  -1.902 0.234  C22 A1ITC 18 
A1ITC O   O1  O 0 1 N N N N N N 20.872 6.858  20.786 -0.483 3.834  -0.105 O   A1ITC 19 
A1ITC N4  N2  N 0 1 N N N N N N 19.175 5.361  20.789 -2.691 3.739  0.114  N4  A1ITC 20 
A1ITC N3  N3  N 0 1 Y N N N N N 18.101 6.415  18.593 -2.473 0.929  0.020  N3  A1ITC 21 
A1ITC N1  N4  N 0 1 Y N N N N N 16.669 6.301  14.548 -5.288 0.662  0.019  N1  A1ITC 22 
A1ITC C6  C18 C 0 1 Y N N N N N 15.380 5.739  18.025 -3.494 -2.615 0.045  C6  A1ITC 23 
A1ITC C5  C19 C 0 1 Y N N N N N 14.214 5.066  17.671 -4.635 -3.399 0.050  C5  A1ITC 24 
A1ITC C4  C20 C 0 1 Y N N N N N 13.901 4.830  16.338 -5.886 -2.818 0.045  C4  A1ITC 25 
A1ITC N   N5  N 0 1 Y N N N N N 14.779 5.220  14.009 -7.089 -0.570 0.027  N   A1ITC 26 
A1ITC C   C21 C 0 1 N N N N N N 13.744 4.592  13.195 -8.505 -0.945 0.029  C   A1ITC 27 
A1ITC N2  N6  N 0 1 Y N N N N N 19.286 8.529  17.156 -0.018 -0.261 0.025  N2  A1ITC 28 
A1ITC N5  N7  N 0 1 N N N N N N 21.005 8.587  18.739 1.035  1.839  0.015  N5  A1ITC 29 
A1ITC C18 C22 C 0 1 Y N N N N N 23.180 9.636  18.798 3.421  1.880  0.386  C18 A1ITC 30 
A1ITC C17 C23 C 0 1 Y N N N N N 24.123 10.500 18.272 4.661  1.282  0.274  C17 A1ITC 31 
A1ITC O1  O2  O 0 1 N N N N N N 26.981 12.994 14.898 8.418  -1.692 0.565  O1  A1ITC 32 
A1ITC H1  H1  H 0 1 N N N N N N 16.171 5.927  12.539 -7.186 1.596  0.015  H1  A1ITC 33 
A1ITC H2  H2  H 0 1 N N N N N N 17.666 8.306  15.858 -1.030 -2.078 0.033  H2  A1ITC 34 
A1ITC H3  H3  H 0 1 N N N N N N 20.721 10.087 16.528 1.527  -0.532 -1.044 H3  A1ITC 35 
A1ITC H4  H4  H 0 1 N N N N N N 22.391 11.624 15.600 3.735  -1.602 -1.234 H4  A1ITC 36 
A1ITC H5  H5  H 0 1 N N N N N N 26.464 10.784 16.428 7.080  1.239  -0.365 H5  A1ITC 37 
A1ITC H6  H6  H 0 1 N N N N N N 26.365 11.714 17.962 6.899  0.430  1.210  H6  A1ITC 38 
A1ITC H7  H7  H 0 1 N N N N N N 28.224 12.455 16.470 8.652  -0.503 -1.110 H7  A1ITC 39 
A1ITC H8  H8  H 0 1 N N N N N N 27.034 13.753 16.829 9.220  0.208  0.420  H8  A1ITC 40 
A1ITC H9  H9  H 0 1 N N N N N N 25.476 14.384 15.190 7.431  -3.509 0.569  H9  A1ITC 41 
A1ITC H10 H10 H 0 1 N N N N N N 25.506 13.594 13.577 7.583  -2.723 -1.021 H10 A1ITC 42 
A1ITC H11 H11 H 0 1 N N N N N N 23.623 12.814 14.990 5.834  -1.784 1.299  H11 A1ITC 43 
A1ITC H12 H12 H 0 1 N N N N N N 24.758 11.491 14.555 5.265  -2.530 -0.215 H12 A1ITC 44 
A1ITC H13 H13 H 0 1 N N N N N N 19.512 4.923  21.622 -3.489 3.194  0.201  H13 A1ITC 45 
A1ITC H14 H14 H 0 1 N N N N N N 18.345 5.021  20.346 -2.762 4.706  0.106  H14 A1ITC 46 
A1ITC H15 H15 H 0 1 N N N N N N 15.599 5.903  19.070 -2.520 -3.083 0.049  H15 A1ITC 47 
A1ITC H16 H16 H 0 1 N N N N N N 13.543 4.722  18.444 -4.545 -4.475 0.058  H16 A1ITC 48 
A1ITC H17 H17 H 0 1 N N N N N N 12.997 4.311  16.056 -6.769 -3.440 0.049  H17 A1ITC 49 
A1ITC H18 H18 H 0 1 N N N N N N 12.958 4.187  13.849 -8.856 -1.046 -0.998 H18 A1ITC 50 
A1ITC H19 H19 H 0 1 N N N N N N 13.308 5.340  12.516 -8.628 -1.894 0.551  H19 A1ITC 51 
A1ITC H20 H20 H 0 1 N N N N N N 14.186 3.776  12.605 -9.084 -0.174 0.537  H20 A1ITC 52 
A1ITC H21 H21 H 0 1 N N N N N N 21.242 8.296  19.666 0.968  2.805  0.086  H21 A1ITC 53 
A1ITC H22 H22 H 0 1 N N N N N N 23.402 9.081  19.697 3.331  2.855  0.841  H22 A1ITC 54 
A1ITC H23 H23 H 0 1 N N N N N N 25.077 10.611 18.766 5.540  1.789  0.643  H23 A1ITC 55 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
A1ITC C   N   SING N N 1  
A1ITC C1  N   SING Y N 2  
A1ITC C1  N1  DOUB Y N 3  
A1ITC N   C3  SING Y N 4  
A1ITC N1  C2  SING Y N 5  
A1ITC C21 O1  SING N N 6  
A1ITC C21 C22 SING N N 7  
A1ITC O1  C20 SING N N 8  
A1ITC C22 N6  SING N N 9  
A1ITC C3  C2  DOUB Y N 10 
A1ITC C3  C4  SING Y N 11 
A1ITC C2  C7  SING Y N 12 
A1ITC C20 C19 SING N N 13 
A1ITC C4  C5  DOUB Y N 14 
A1ITC C15 C14 DOUB Y N 15 
A1ITC C15 C16 SING Y N 16 
A1ITC N6  C19 SING N N 17 
A1ITC N6  C16 SING N N 18 
A1ITC C9  N2  DOUB Y N 19 
A1ITC C9  C8  SING Y N 20 
A1ITC C14 C13 SING Y N 21 
A1ITC C7  C8  SING N N 22 
A1ITC C7  C6  DOUB Y N 23 
A1ITC C16 C17 DOUB Y N 24 
A1ITC N2  C10 SING Y N 25 
A1ITC C8  N3  DOUB Y N 26 
A1ITC C5  C6  SING Y N 27 
A1ITC C13 N5  SING N N 28 
A1ITC C13 C18 DOUB Y N 29 
A1ITC C17 C18 SING Y N 30 
A1ITC C10 N5  SING N N 31 
A1ITC C10 C11 DOUB Y N 32 
A1ITC N3  C11 SING Y N 33 
A1ITC C11 C12 SING N N 34 
A1ITC C12 O   DOUB N N 35 
A1ITC C12 N4  SING N N 36 
A1ITC C1  H1  SING N N 37 
A1ITC C9  H2  SING N N 38 
A1ITC C14 H3  SING N N 39 
A1ITC C15 H4  SING N N 40 
A1ITC C19 H5  SING N N 41 
A1ITC C19 H6  SING N N 42 
A1ITC C20 H7  SING N N 43 
A1ITC C20 H8  SING N N 44 
A1ITC C21 H9  SING N N 45 
A1ITC C21 H10 SING N N 46 
A1ITC C22 H11 SING N N 47 
A1ITC C22 H12 SING N N 48 
A1ITC N4  H13 SING N N 49 
A1ITC N4  H14 SING N N 50 
A1ITC C6  H15 SING N N 51 
A1ITC C5  H16 SING N N 52 
A1ITC C4  H17 SING N N 53 
A1ITC C   H18 SING N N 54 
A1ITC C   H19 SING N N 55 
A1ITC C   H20 SING N N 56 
A1ITC N5  H21 SING N N 57 
A1ITC C18 H22 SING N N 58 
A1ITC C17 H23 SING N N 59 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
A1ITC InChI            InChI                1.06  "InChI=1S/C23H23N7O2/c1-29-14-26-20-17(3-2-4-19(20)29)18-13-25-23(21(28-18)22(24)31)27-15-5-7-16(8-6-15)30-9-11-32-12-10-30/h2-8,13-14H,9-12H2,1H3,(H2,24,31)(H,25,27)" 
A1ITC InChIKey         InChI                1.06  AFUGKASDRSHPJZ-UHFFFAOYSA-N                                                                                                                                             
A1ITC SMILES_CANONICAL CACTVS               3.385 "Cn1cnc2c1cccc2c3cnc(Nc4ccc(cc4)N5CCOCC5)c(n3)C(N)=O"                                                                                                                   
A1ITC SMILES           CACTVS               3.385 "Cn1cnc2c1cccc2c3cnc(Nc4ccc(cc4)N5CCOCC5)c(n3)C(N)=O"                                                                                                                   
A1ITC SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cn1cnc2c1cccc2c3cnc(c(n3)C(=O)N)Nc4ccc(cc4)N5CCOCC5"                                                                                                                   
A1ITC SMILES           "OpenEye OEToolkits" 2.0.7 "Cn1cnc2c1cccc2c3cnc(c(n3)C(=O)N)Nc4ccc(cc4)N5CCOCC5"                                                                                                                   
# 
_pdbx_chem_comp_identifier.comp_id           A1ITC 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "6-(1-methylbenzimidazol-4-yl)-3-[(4-morpholin-4-ylphenyl)amino]pyrazine-2-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
A1ITC "Create component" 2024-10-29 PDBE 
A1ITC "Initial release"  2025-02-19 RCSB 
# 
