data_I0C
# 
_chem_comp.id                                    I0C 
_chem_comp.name                                  "(2~{S})-4-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl-[3-[[9-[(2~{R},5~{R})-5-(hydroxymethyl)-3,4-bis(oxidanyl)oxolan-2-yl]-7~{H}-purin-6-yl]amino]propyl]amino]-2-azanyl-butanoic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               ? 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-07-24 
_chem_comp.pdbx_modified_date                    2023-11-03 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        674.666 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     I0C 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   Y 
_chem_comp.pdbx_ideal_coordinates_details        ? 
_chem_comp.pdbx_ideal_coordinates_missing_flag   ? 
_chem_comp.pdbx_model_coordinates_db_code        8PWA 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
I0C N1   N1  N 0 1 Y N N N N N -39.119 40.050 26.835 ? ? ? N1   I0C 1  
I0C N3   N2  N 0 1 Y N N N N N -40.542 38.301 27.289 ? ? ? N3   I0C 2  
I0C C4   C1  C 0 1 Y N N N N N -41.047 38.336 26.030 ? ? ? C4   I0C 3  
I0C C5   C2  C 0 1 Y N N N N N -40.569 39.268 25.133 ? ? ? C5   I0C 4  
I0C C6   C3  C 0 1 Y N N N N N -39.574 40.149 25.575 ? ? ? C6   I0C 5  
I0C C8   C4  C 0 1 Y N N N N N -42.102 38.076 24.137 ? ? ? C8   I0C 6  
I0C N    N3  N 0 1 N N N N N N -41.683 28.699 27.621 ? ? ? N    I0C 7  
I0C CA   C5  C 0 1 N N R N N N -42.979 29.263 27.870 ? ? ? CA   I0C 8  
I0C C    C6  C 0 1 N N N N N N -43.987 28.209 28.333 ? ? ? C    I0C 9  
I0C O    O1  O 0 1 N N N N N N -43.609 27.047 28.610 ? ? ? O    I0C 10 
I0C CB   C7  C 0 1 N N N N N N -43.537 29.952 26.625 ? ? ? CB   I0C 11 
I0C OXT  O2  O 0 1 N N N N N N -45.196 28.523 28.458 ? ? ? OXT  I0C 12 
I0C C2   C8  C 0 1 Y N N N N N -39.612 39.136 27.673 ? ? ? C2   I0C 13 
I0C CAK  C9  C 0 1 Y N N N N N -49.667 31.377 22.581 ? ? ? CAK  I0C 14 
I0C CAM  C10 C 0 1 Y N N N N N -50.370 35.425 24.236 ? ? ? CAM  I0C 15 
I0C CAN  C11 C 0 1 N N N N N N -44.942 31.628 23.226 ? ? ? CAN  I0C 16 
I0C CAP  C12 C 0 1 N N N N N N -45.965 31.634 24.440 ? ? ? CAP  I0C 17 
I0C CAR  C13 C 0 1 N N N N N N -43.545 31.171 23.709 ? ? ? CAR  I0C 18 
I0C CAS  C14 C 0 1 N N N N N N -42.573 31.021 26.033 ? ? ? CAS  I0C 19 
I0C CAT  C15 C 0 1 N N N N N N -42.622 33.142 24.771 ? ? ? CAT  I0C 20 
I0C CBF  C16 C 0 1 Y N N N N N -48.176 32.622 23.831 ? ? ? CBF  I0C 21 
I0C CBH  C17 C 0 1 Y N N N N N -49.137 33.657 23.916 ? ? ? CBH  I0C 22 
I0C CBJ  C18 C 0 1 Y N N N N N -50.362 33.470 23.294 ? ? ? CBJ  I0C 23 
I0C CBM  C19 C 0 1 N N R N N N -44.047 34.642 26.000 ? ? ? CBM  I0C 24 
I0C CBO  C20 C 0 1 N N R N N N -43.781 36.169 25.379 ? ? ? CBO  I0C 25 
I0C CBQ  C21 C 0 1 N N R N N N -42.833 34.058 26.007 ? ? ? CBQ  I0C 26 
I0C CBS  C22 C 0 1 N N S N N N -42.743 36.515 26.001 ? ? ? CBS  I0C 27 
I0C N6   N4  N 0 1 N N N N N N -39.023 41.140 24.694 ? ? ? N6   I0C 28 
I0C N7   N5  N 0 1 Y N N N N N -41.235 39.071 23.981 ? ? ? N7   I0C 29 
I0C N9   N6  N 0 1 Y N N N N N -41.996 37.631 25.387 ? ? ? N9   I0C 30 
I0C NAV  N7  N 0 1 Y N N N N N -48.477 31.522 23.164 ? ? ? NAV  I0C 31 
I0C NAX  N8  N 0 1 Y N N N N N -50.598 32.328 22.639 ? ? ? NAX  I0C 32 
I0C NAZ  N9  N 0 1 Y N N N N N -49.184 34.872 24.484 ? ? ? NAZ  I0C 33 
I0C NBA  N10 N 0 1 N N N N N N -46.876 32.761 24.454 ? ? ? NBA  I0C 34 
I0C NBT  N11 N 0 1 N N N N N N -43.322 31.847 25.034 ? ? ? NBT  I0C 35 
I0C NBV  N12 N 0 1 Y N N N N N -51.096 34.581 23.514 ? ? ? NBV  I0C 36 
I0C OAG  O3  O 0 1 N N N N N N -44.518 34.836 27.336 ? ? ? OAG  I0C 37 
I0C OAI  O4  O 0 1 N N N N N N -44.920 37.034 25.718 ? ? ? OAI  I0C 38 
I0C OBC  O5  O 0 1 N N N N N N -41.827 35.168 25.864 ? ? ? OBC  I0C 39 
I0C H81  H1  H 0 1 N N N N N N -42.774 37.695 23.382 ? ? ? H81  I0C 40 
I0C H1   H2  H 0 1 N N N N N N -41.057 29.419 27.322 ? ? ? H1   I0C 41 
I0C H2   H3  H 0 1 N N N N N N -41.334 28.282 28.460 ? ? ? H2   I0C 42 
I0C HA   H5  H 0 1 N N N N N N -42.894 30.019 28.664 ? ? ? HA   I0C 43 
I0C HB3  H6  H 0 1 N N N N N N -43.726 29.187 25.857 ? ? ? HB3  I0C 44 
I0C HB2  H7  H 0 1 N N N N N N -44.484 30.444 26.892 ? ? ? HB2  I0C 45 
I0C H3   H8  H 0 1 N N N N N N -45.688 27.772 28.770 ? ? ? H3   I0C 46 
I0C H21  H9  H 0 1 N N N N N N -39.237 39.085 28.684 ? ? ? H21  I0C 47 
I0C HAK1 H10 H 0 0 N N N N N N -49.882 30.463 22.047 ? ? ? HAK1 I0C 48 
I0C HAM1 H11 H 0 0 N N N N N N -50.689 36.402 24.569 ? ? ? HAM1 I0C 49 
I0C HAN2 H12 H 0 0 N N N N N N -45.303 30.937 22.450 ? ? ? HAN2 I0C 50 
I0C HAN1 H13 H 0 0 N N N N N N -44.868 32.643 22.808 ? ? ? HAN1 I0C 51 
I0C HAP1 H14 H 0 0 N N N N N N -46.561 30.711 24.391 ? ? ? HAP1 I0C 52 
I0C HAP2 H15 H 0 0 N N N N N N -45.387 31.648 25.376 ? ? ? HAP2 I0C 53 
I0C HAR1 H16 H 0 0 N N N N N N -43.521 30.078 23.829 ? ? ? HAR1 I0C 54 
I0C HAR2 H17 H 0 0 N N N N N N -42.772 31.478 22.989 ? ? ? HAR2 I0C 55 
I0C HAS2 H18 H 0 0 N N N N N N -41.726 30.522 25.539 ? ? ? HAS2 I0C 56 
I0C HAS1 H19 H 0 0 N N N N N N -42.198 31.668 26.840 ? ? ? HAS1 I0C 57 
I0C HAT1 H20 H 0 0 N N N N N N -43.045 33.620 23.875 ? ? ? HAT1 I0C 58 
I0C HAT2 H21 H 0 0 N N N N N N -41.548 32.962 24.618 ? ? ? HAT2 I0C 59 
I0C HBM1 H22 H 0 0 N N N N N N -44.784 34.123 25.369 ? ? ? HBM1 I0C 60 
I0C HBO1 H23 H 0 0 N N N N N N -43.659 36.085 24.289 ? ? ? HBO1 I0C 61 
I0C HBQ1 H24 H 0 0 N N N N N N -42.641 33.486 26.927 ? ? ? HBQ1 I0C 62 
I0C HBS1 H25 H 0 0 N N N N N N -42.908 36.711 27.071 ? ? ? HBS1 I0C 63 
I0C H62  H26 H 0 1 N N N N N N -38.320 41.662 25.177 ? ? ? H62  I0C 64 
I0C H61  H27 H 0 1 N N N N N N -38.616 40.690 23.899 ? ? ? H61  I0C 65 
I0C HBA1 H29 H 0 0 N N N N N N -47.034 32.998 25.413 ? ? ? HBA1 I0C 66 
I0C HAG1 H42 H 0 0 N N N N N N -44.686 33.992 27.739 ? ? ? HAG1 I0C 67 
I0C HAI1 H33 H 0 0 N N N N N N -44.773 37.904 25.367 ? ? ? HAI1 I0C 68 
I0C C10  C23 C 0 1 N N S N N N ?       ?      ?      ? ? ? C10  I0C 69 
I0C O1   O6  O 0 1 N N N N N N ?       ?      ?      ? ? ? O1   I0C 70 
I0C C3   C24 C 0 1 N N R N N N ?       ?      ?      ? ? ? C3   I0C 71 
I0C C7   C25 C 0 1 N N S N N N ?       ?      ?      ? ? ? C7   I0C 72 
I0C C9   C26 C 0 1 N N R N N N ?       ?      ?      ? ? ? C9   I0C 73 
I0C H7   H41 H 0 1 N N N N N N ?       ?      ?      ? ? ? H7   I0C 74 
I0C O4   O7  O 0 1 N N N N N N ?       ?      ?      ? ? ? O4   I0C 75 
I0C O3   O8  O 0 1 N N N N N N ?       ?      ?      ? ? ? O3   I0C 76 
I0C C1   C27 C 0 1 N N N N N N ?       ?      ?      ? ? ? C1   I0C 77 
I0C O2   O9  O 0 1 N N N N N N ?       ?      ?      ? ? ? O2   I0C 78 
I0C H10  H31 H 0 1 N N N N N N ?       ?      ?      ? ? ? H10  I0C 79 
I0C H8   H32 H 0 1 N N N N N N ?       ?      ?      ? ? ? H8   I0C 80 
I0C H9   H34 H 0 1 N N N N N N ?       ?      ?      ? ? ? H9   I0C 81 
I0C H11  H35 H 0 1 N N N N N N ?       ?      ?      ? ? ? H11  I0C 82 
I0C H5   H36 H 0 1 N N N N N N ?       ?      ?      ? ? ? H5   I0C 83 
I0C H6   H37 H 0 1 N N N N N N ?       ?      ?      ? ? ? H6   I0C 84 
I0C H12  H38 H 0 1 N N N N N N ?       ?      ?      ? ? ? H12  I0C 85 
I0C H13  H39 H 0 1 N N N N N N ?       ?      ?      ? ? ? H13  I0C 86 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
I0C N   CA   SING N N 1  
I0C CA  C    SING N N 2  
I0C CA  CB   SING N N 3  
I0C CAK NAV  DOUB Y N 4  
I0C CAK NAX  SING Y N 5  
I0C CAM NAZ  DOUB Y N 6  
I0C CAM NBV  SING Y N 7  
I0C CAN CAP  SING N N 8  
I0C CAN CAR  SING N N 9  
I0C CAP NBA  SING N N 10 
I0C CAR NBT  SING N N 11 
I0C CAS NBT  SING N N 12 
I0C CAS CB   SING N N 13 
I0C CAT CBQ  SING N N 14 
I0C CAT NBT  SING N N 15 
I0C C   O    DOUB N N 16 
I0C C   OXT  SING N N 17 
I0C NAV CBF  SING Y N 18 
I0C NAX CBJ  DOUB Y N 19 
I0C NAZ CBH  SING Y N 20 
I0C OAG CBM  SING N N 21 
I0C OAI CBO  SING N N 22 
I0C CBF CBH  DOUB Y N 23 
I0C CBF NBA  SING N N 24 
I0C CBH CBJ  SING Y N 25 
I0C CBJ NBV  SING Y N 26 
I0C CBM CBO  SING N N 27 
I0C CBM CBQ  SING N N 28 
I0C CBO CBS  SING N N 29 
I0C CBQ OBC  SING N N 30 
I0C CBS OBC  SING N N 31 
I0C CBS N9   SING N N 32 
I0C N1  C2   DOUB Y N 33 
I0C N1  C6   SING Y N 34 
I0C C2  N3   SING Y N 35 
I0C N3  C4   DOUB Y N 36 
I0C C4  C5   SING Y N 37 
I0C C4  N9   SING Y N 38 
I0C C5  C6   DOUB Y N 39 
I0C C5  N7   SING Y N 40 
I0C C6  N6   SING N N 41 
I0C N7  C8   DOUB Y N 42 
I0C C8  N9   SING Y N 43 
I0C C8  H81  SING N N 44 
I0C N   H1   SING N N 45 
I0C N   H2   SING N N 46 
I0C CA  HA   SING N N 47 
I0C CB  HB3  SING N N 48 
I0C CB  HB2  SING N N 49 
I0C OXT H3   SING N N 50 
I0C C2  H21  SING N N 51 
I0C CAK HAK1 SING N N 52 
I0C CAM HAM1 SING N N 53 
I0C CAN HAN2 SING N N 54 
I0C CAN HAN1 SING N N 55 
I0C CAP HAP1 SING N N 56 
I0C CAP HAP2 SING N N 57 
I0C CAR HAR1 SING N N 58 
I0C CAR HAR2 SING N N 59 
I0C CAS HAS2 SING N N 60 
I0C CAS HAS1 SING N N 61 
I0C CAT HAT1 SING N N 62 
I0C CAT HAT2 SING N N 63 
I0C CBM HBM1 SING N N 64 
I0C CBO HBO1 SING N N 65 
I0C CBQ HBQ1 SING N N 66 
I0C CBS HBS1 SING N N 67 
I0C N6  H62  SING N N 68 
I0C N6  H61  SING N N 69 
I0C NBA HBA1 SING N N 70 
I0C OAG HAG1 SING N N 71 
I0C OAI HAI1 SING N N 72 
I0C C10 O1   SING N N 73 
I0C O1  C3   SING N N 74 
I0C C3  C7   SING N N 75 
I0C C7  C9   SING N N 76 
I0C C9  C10  SING N N 77 
I0C NBV C10  SING N N 78 
I0C C3  H7   SING N N 79 
I0C C7  O4   SING N N 80 
I0C C9  O3   SING N N 81 
I0C C3  C1   SING N N 82 
I0C C1  O2   SING N N 83 
I0C O2  H10  SING N N 84 
I0C O4  H8   SING N N 85 
I0C O3  H9   SING N N 86 
I0C C10 H11  SING N N 87 
I0C C7  H5   SING N N 88 
I0C C9  H6   SING N N 89 
I0C C1  H12  SING N N 90 
I0C C1  H13  SING N N 91 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
I0C InChI            InChI                1.06  "InChI=1S/C27H38N12O9/c28-12(27(45)46)2-5-37(6-13-17(41)19(43)25(47-13)38-10-35-15-21(29)31-8-33-23(15)38)4-1-3-30-22-16-24(34-9-32-22)39(11-36-16)26-20(44)18(42)14(7-40)48-26/h8-14,17-20,25-26,40-44H,1-7,28H2,(H,45,46)(H2,29,31,33)(H,30,32,34)/t12-,13+,14?,17+,18?,19+,20?,25+,26?/m0/s1" 
I0C InChIKey         InChI                1.06  BNMNWGQODJWABC-MAYUJHHQSA-N                                                                                                                                                                                                                                                                      
I0C SMILES_CANONICAL CACTVS               3.385 "N[C@@H](CCN(CCCNc1ncnc2n(cnc12)C3OC(CO)C(O)C3O)C[C@H]4O[C@H]([C@H](O)[C@@H]4O)n5cnc6c(N)ncnc56)C(O)=O"                                                                                                                                                                                          
I0C SMILES           CACTVS               3.385 "N[CH](CCN(CCCNc1ncnc2n(cnc12)C3OC(CO)C(O)C3O)C[CH]4O[CH]([CH](O)[CH]4O)n5cnc6c(N)ncnc56)C(O)=O"                                                                                                                                                                                                 
I0C SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CN(CCCNc4c5c(ncn4)n(cn5)[C@H]6[C@@H]([C@@H]([C@H](O6)CO)O)O)CC[C@@H](C(=O)O)N)O)O)N"                                                                                                                                                             
I0C SMILES           "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)CN(CCCNc4c5c(ncn4)n(cn5)C6C(C(C(O6)CO)O)O)CCC(C(=O)O)N)O)O)N"                                                                                                                                                                                                      
# 
_pdbx_chem_comp_identifier.comp_id           I0C 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(2~{S})-4-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl-[3-[[9-[(2~{R},3~{R},4~{S},5~{R})-5-(hydroxymethyl)-3,4-bis(oxidanyl)oxolan-2-yl]purin-6-yl]amino]propyl]amino]-2-azanyl-butanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
I0C "Create component"   2023-07-24 PDBE 
I0C "Modify coordinates" 2023-07-24 PDBE 
I0C "Initial release"    2023-11-08 RCSB 
# 
