data_WMC
# 
_chem_comp.id                                    WMC 
_chem_comp.name                                  "(5~{S},6~{S})-5,6,15,17-tetrakis(oxidanyl)-2,12-dioxabicyclo[12.4.0]octadeca-1(14),15,17-triene-7,13-dione" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C16 H20 O8" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-10-09 
_chem_comp.pdbx_modified_date                    2025-04-11 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        340.325 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     WMC 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8QR5 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
WMC C4   C1  C 0 1 Y N N N N N -16.173 16.437 42.768 -1.847 -0.888 -0.274 C4   WMC 1  
WMC C5   C2  C 0 1 Y N N N N N -17.007 17.077 43.654 -2.998 -1.649 -0.343 C5   WMC 2  
WMC C6   C3  C 0 1 Y N N N N N -18.302 16.625 43.839 -4.242 -1.046 -0.210 C6   WMC 3  
WMC C7   C4  C 0 1 Y N N N N N -18.807 15.558 43.123 -4.339 0.327  -0.024 C7   WMC 4  
WMC C3   C5  C 0 1 N N N N N N -14.497 18.169 43.020 -0.150 -2.263 0.659  C3   WMC 5  
WMC C2   C6  C 0 1 N N N N N N -13.036 18.282 42.667 1.167  -2.931 0.267  C2   WMC 6  
WMC C1   C7  C 0 1 N N S N N N -12.195 17.389 43.583 2.358  -2.034 0.595  C1   WMC 7  
WMC C10  C8  C 0 1 N N N N N N -15.856 14.525 41.068 -0.705 1.287  0.108  C10  WMC 8  
WMC C11  C9  C 0 1 N N N N N N -13.709 14.106 40.121 0.504  3.334  0.347  C11  WMC 9  
WMC C12  C10 C 0 1 N N N N N N -12.279 14.606 40.271 1.581  2.889  -0.643 C12  WMC 10 
WMC C13  C11 C 0 1 N N N N N N -11.648 14.327 41.646 2.753  2.270  0.120  C13  WMC 11 
WMC C14  C12 C 0 1 N N N N N N -10.388 15.068 41.924 3.526  1.327  -0.803 C14  WMC 12 
WMC C15  C13 C 0 1 N N N N N N -10.523 16.563 41.848 3.617  -0.039 -0.172 C15  WMC 13 
WMC C16  C14 C 0 1 N N S N N N -10.731 17.355 43.136 2.678  -1.135 -0.601 C16  WMC 14 
WMC C8   C15 C 0 1 Y N N N N N -17.972 14.911 42.238 -3.196 1.104  0.046  C8   WMC 15 
WMC C9   C16 C 0 1 Y N N N N N -16.643 15.337 42.032 -1.933 0.498  -0.052 C9   WMC 16 
WMC O1   O1  O 0 1 N N N N N N -12.299 17.972 44.894 2.084  -1.234 1.743  O1   WMC 17 
WMC O2   O2  O 0 1 N N N N N N -14.899 16.865 42.581 -0.634 -1.476 -0.432 O2   WMC 18 
WMC O3   O3  O 0 1 N N N N N N -19.104 17.266 44.741 -5.368 -1.801 -0.267 O3   WMC 19 
WMC O4   O4  O 0 1 N N N N N N -18.463 13.850 41.562 -3.308 2.446  0.213  O4   WMC 20 
WMC O5   O5  O 0 1 N N N N N N -16.332 13.601 40.455 0.357  0.713  0.262  O5   WMC 21 
WMC O6   O6  O 0 1 N N N N N N -14.556 14.836 41.060 -0.737 2.631  0.078  O6   WMC 22 
WMC O7   O7  O 0 1 N N N N N N -10.478 17.139 40.783 4.452  -0.255 0.674  O7   WMC 23 
WMC O8   O8  O 0 1 N N N N N N -10.299 18.697 43.020 3.298  -1.915 -1.627 O8   WMC 24 
WMC H7   H1  H 0 1 N N N N N N -16.651 17.934 44.207 -2.930 -2.716 -0.500 H7   WMC 25 
WMC H9   H2  H 0 1 N N N N N N -19.830 15.239 43.253 -5.309 0.790  0.072  H9   WMC 26 
WMC H5   H3  H 0 1 N N N N N N -14.639 18.269 44.106 -0.889 -3.038 0.888  H5   WMC 27 
WMC H6   H4  H 0 1 N N N N N N -15.079 18.945 42.501 -0.024 -1.635 1.536  H6   WMC 28 
WMC H3   H5  H 0 1 N N N N N N -12.714 19.327 42.785 1.265  -3.878 0.803  H3   WMC 29 
WMC H4   H6  H 0 1 N N N N N N -12.890 17.969 41.623 1.156  -3.139 -0.807 H4   WMC 30 
WMC H2   H7  H 0 1 N N N N N N -12.604 16.368 43.576 3.229  -2.664 0.805  H2   WMC 31 
WMC H11  H8  H 0 1 N N N N N N -13.751 13.029 40.343 0.832  3.116  1.364  H11  WMC 32 
WMC H12  H9  H 0 1 N N N N N N -14.058 14.282 39.093 0.342  4.409  0.247  H12  WMC 33 
WMC H14  H10 H 0 1 N N N N N N -11.661 14.117 39.504 1.165  2.155  -1.333 H14  WMC 34 
WMC H13  H11 H 0 1 N N N N N N -12.276 15.693 40.106 1.934  3.753  -1.208 H13  WMC 35 
WMC H15  H12 H 0 1 N N N N N N -12.381 14.600 42.419 3.417  3.062  0.467  H15  WMC 36 
WMC H131 H13 H 0 0 N N N N N N -11.431 13.250 41.709 2.378  1.714  0.978  H131 WMC 37 
WMC H16  H14 H 0 1 N N N N N N -10.048 14.803 42.936 3.014  1.252  -1.762 H16  WMC 38 
WMC H141 H15 H 0 0 N N N N N N -9.633  14.752 41.189 4.533  1.720  -0.960 H141 WMC 39 
WMC H17  H16 H 0 1 N N N N N N -10.153 16.859 43.929 1.758  -0.698 -0.986 H17  WMC 40 
WMC H1   H17 H 0 1 N N N N N N -11.793 17.457 45.511 1.896  -1.744 2.543  H1   WMC 41 
WMC H8   H18 H 0 1 N N N N N N -19.957 16.848 44.760 -5.659 -2.139 0.591  H8   WMC 42 
WMC H10  H19 H 0 1 N N N N N N -17.791 13.501 40.988 -3.321 2.728  1.138  H10  WMC 43 
WMC H18  H20 H 0 1 N N N N N N -10.114 18.893 42.109 3.530  -1.411 -2.419 H18  WMC 44 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
WMC O1  C1   SING N N 1  
WMC C1  C2   SING N N 2  
WMC C1  C16  SING N N 3  
WMC C2  C3   SING N N 4  
WMC C3  O2   SING N N 5  
WMC O2  C4   SING N N 6  
WMC C4  C5   SING Y N 7  
WMC C4  C9   DOUB Y N 8  
WMC C5  C6   DOUB Y N 9  
WMC C6  O3   SING N N 10 
WMC C6  C7   SING Y N 11 
WMC C7  C8   DOUB Y N 12 
WMC C8  O4   SING N N 13 
WMC C8  C9   SING Y N 14 
WMC C9  C10  SING N N 15 
WMC C10 O5   DOUB N N 16 
WMC C10 O6   SING N N 17 
WMC O6  C11  SING N N 18 
WMC C11 C12  SING N N 19 
WMC C12 C13  SING N N 20 
WMC C13 C14  SING N N 21 
WMC C14 C15  SING N N 22 
WMC C15 O7   DOUB N N 23 
WMC C15 C16  SING N N 24 
WMC C16 O8   SING N N 25 
WMC C5  H7   SING N N 26 
WMC C7  H9   SING N N 27 
WMC C3  H5   SING N N 28 
WMC C3  H6   SING N N 29 
WMC C2  H3   SING N N 30 
WMC C2  H4   SING N N 31 
WMC C1  H2   SING N N 32 
WMC C11 H11  SING N N 33 
WMC C11 H12  SING N N 34 
WMC C12 H14  SING N N 35 
WMC C12 H13  SING N N 36 
WMC C13 H15  SING N N 37 
WMC C13 H131 SING N N 38 
WMC C14 H16  SING N N 39 
WMC C14 H141 SING N N 40 
WMC C16 H17  SING N N 41 
WMC O1  H1   SING N N 42 
WMC O3  H8   SING N N 43 
WMC O4  H10  SING N N 44 
WMC O8  H18  SING N N 45 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
WMC InChI            InChI                1.06  "InChI=1S/C16H20O8/c17-9-7-12(20)14-13(8-9)23-6-4-11(19)15(21)10(18)3-1-2-5-24-16(14)22/h7-8,11,15,17,19-21H,1-6H2" 
WMC InChIKey         InChI                1.06  ZJNGIMKXODSFLG-UHFFFAOYSA-N                                                                                         
WMC SMILES_CANONICAL CACTVS               3.385 "O[C@H]1CCOc2cc(O)cc(O)c2C(=O)OCCCCC(=O)[C@H]1O"                                                                    
WMC SMILES           CACTVS               3.385 "O[CH]1CCOc2cc(O)cc(O)c2C(=O)OCCCCC(=O)[CH]1O"                                                                      
WMC SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1c(cc2c(c1O)C(=O)OCCCCC(=O)[C@H]([C@H](CCO2)O)O)O"                                                                
WMC SMILES           "OpenEye OEToolkits" 2.0.7 "c1c(cc2c(c1O)C(=O)OCCCCC(=O)C(C(CCO2)O)O)O"                                                                        
# 
_pdbx_chem_comp_identifier.comp_id           WMC 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(5~{S},6~{S})-5,6,15,17-tetrakis(oxidanyl)-2,12-dioxabicyclo[12.4.0]octadeca-1(14),15,17-triene-7,13-dione" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
WMC "Create component" 2023-10-09 PDBE 
WMC "Modify PCM"       2024-09-27 PDBE 
WMC "Initial release"  2025-04-16 RCSB 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            WMC 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C13 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
