data_A1ATD
# 
_chem_comp.id                                    A1ATD 
_chem_comp.name                                  "(3S,5R)-1-[4-(2-carbamimidamidoethyl)piperazine-1-carbonyl]-N-(4-chloro-3-fluorophenyl)-5-(hydroxymethyl)piperidine-3-carboxamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C21 H31 Cl F N7 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2024-05-28 
_chem_comp.pdbx_modified_date                    2025-03-28 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        483.967 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     A1ATD 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        9BXW 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
A1ATD C10 C1  C  0 1 N N N N N N -3.231 17.424 -15.154 -3.200 0.803  -0.278 C10 A1ATD 1  
A1ATD CD  C2  C  0 1 N N N N N N -1.371 11.599 -8.867  7.348  -0.614 0.468  CD  A1ATD 2  
A1ATD NE  N1  N  0 1 N N N N N N -1.641 11.421 -7.459  8.535  -1.285 1.003  NE  A1ATD 3  
A1ATD CZ  C3  C  0 1 N N N N N N -2.489 10.314 -7.043  9.466  -0.569 1.717  CZ  A1ATD 4  
A1ATD NH1 N2  N  0 1 N N N N N N -2.732 10.140 -5.823  10.581 -1.199 2.220  NH1 A1ATD 5  
A1ATD NH2 N3  N  0 1 N N N N N N -2.982 9.536  -7.896  9.293  0.707  1.919  NH2 A1ATD 6  
A1ATD C01 C4  C  0 1 N N N N N N -0.800 12.975 -9.188  6.482  -1.630 -0.280 C01 A1ATD 7  
A1ATD C03 C5  C  0 1 N N N N N N 1.143  13.555 -9.888  4.424  -0.478 0.268  C03 A1ATD 8  
A1ATD C04 C6  C  0 1 N N N N N N 1.276  14.866 -10.654 3.293  0.371  -0.324 C04 A1ATD 9  
A1ATD C06 C7  C  0 1 N N N N N N 0.029  16.904 -11.356 1.273  -0.559 -1.357 C06 A1ATD 10 
A1ATD C08 C8  C  0 1 N N N N N N -2.367 17.259 -12.612 -0.883 -0.085 -0.297 C08 A1ATD 11 
A1ATD C09 C9  C  0 1 N N S N N N -2.099 17.595 -14.086 -1.783 1.085  -0.706 C09 A1ATD 12 
A1ATD C13 C10 C  0 1 Y N N N N N -3.696 17.326 -17.699 -5.120 -0.603 -0.270 C13 A1ATD 13 
A1ATD C14 C11 C  0 1 Y N N N N N -5.075 17.255 -17.585 -6.019 0.410  0.036  C14 A1ATD 14 
A1ATD C15 C12 C  0 1 Y N N N N N -5.857 17.087 -18.726 -7.280 0.094  0.505  C15 A1ATD 15 
A1ATD C17 C13 C  0 1 Y N N N N N -5.265 16.969 -19.972 -7.647 -1.233 0.670  C17 A1ATD 16 
A1ATD C19 C14 C  0 1 Y N N N N N -3.890 17.018 -20.083 -6.752 -2.242 0.365  C19 A1ATD 17 
A1ATD C20 C15 C  0 1 Y N N N N N -3.111 17.187 -18.953 -5.492 -1.931 -0.109 C20 A1ATD 18 
A1ATD C21 C16 C  0 1 N N N N N N -1.734 19.038 -14.315 -1.289 2.365  -0.029 C21 A1ATD 19 
A1ATD C22 C17 C  0 1 N N R N N N -0.705 19.648 -13.436 0.138  2.670  -0.489 C22 A1ATD 20 
A1ATD C23 C18 C  0 1 N N N N N N -0.951 19.173 -11.965 1.060  1.518  -0.077 C23 A1ATD 21 
A1ATD C25 C19 C  0 1 N N N N N N -0.830 14.514 -11.726 3.434  -1.044 -2.410 C25 A1ATD 22 
A1ATD C26 C20 C  0 1 N N N N N N -0.617 13.039 -11.373 4.559  -1.837 -1.736 C26 A1ATD 23 
A1ATD C27 C21 C  0 1 N N N N N N -0.611 21.203 -13.406 0.619  3.967  0.164  C27 A1ATD 24 
A1ATD F16 F1  F  0 1 N N N N N N -7.213 17.034 -18.639 -8.156 1.079  0.804  F16 A1ATD 25 
A1ATD N02 N4  N  0 1 N N N N N N -0.004 12.817 -10.141 5.292  -0.957 -0.817 N02 A1ATD 26 
A1ATD N05 N5  N  0 1 N N N N N N 0.123  15.445 -11.247 2.613  -0.416 -1.363 N05 A1ATD 27 
A1ATD N07 N6  N  0 1 N N N N N N -1.076 17.686 -11.932 0.512  0.261  -0.605 N07 A1ATD 28 
A1ATD N12 N7  N  0 1 N N N N N N -2.810 17.487 -16.550 -3.842 -0.286 -0.745 N12 A1ATD 29 
A1ATD O11 O1  O  0 1 N N N N N N -4.359 17.282 -14.848 -3.761 1.554  0.492  O11 A1ATD 30 
A1ATD O24 O2  O  0 1 N N N N N N 0.929  17.525 -10.905 0.750  -1.426 -2.030 O24 A1ATD 31 
A1ATD O28 O3  O  0 1 N N N N N N 0.655  21.473 -12.835 1.905  4.313  -0.354 O28 A1ATD 32 
A1ATD CL1 CL1 CL 0 0 N N N N N N -6.254 16.748 -21.444 -9.231 -1.628 1.259  CL1 A1ATD 33 
A1ATD H1  H1  H  0 1 N N N N N N -2.310 11.469 -9.424  6.775  -0.181 1.288  H1  A1ATD 34 
A1ATD H2  H2  H  0 1 N N N N N N -0.647 10.835 -9.186  7.655  0.176  -0.218 H2  A1ATD 35 
A1ATD H3  H3  H  0 1 N N N N N N -1.252 12.047 -6.783  8.665  -2.235 0.853  H3  A1ATD 36 
A1ATD H4  H4  H  0 1 N N N N N N -2.343 10.761 -5.142  10.710 -2.148 2.070  H4  A1ATD 37 
A1ATD H5  H5  H  0 1 N N N N N N -3.314 9.381  -5.532  11.237 -0.694 2.724  H5  A1ATD 38 
A1ATD H6  H6  H  0 1 N N N N N N -3.545 8.826  -7.474  9.950  1.212  2.423  H6  A1ATD 39 
A1ATD H7  H7  H  0 1 N N N N N N -0.270 13.380 -8.313  7.055  -2.062 -1.100 H7  A1ATD 40 
A1ATD H8  H8  H  0 1 N N N N N N -1.608 13.663 -9.478  6.175  -2.420 0.405  H8  A1ATD 41 
A1ATD H9  H9  H  0 1 N N N N N N 2.010  12.927 -10.142 5.008  0.127  0.961  H9  A1ATD 42 
A1ATD H10 H10 H  0 1 N N N N N N 1.162  13.790 -8.813  4.000  -1.331 0.797  H10 A1ATD 43 
A1ATD H11 H11 H  0 1 N N N N N N 2.000  14.692 -11.464 2.583  0.633  0.461  H11 A1ATD 44 
A1ATD H12 H12 H  0 1 N N N N N N 1.682  15.608 -9.951  3.708  1.279  -0.761 H12 A1ATD 45 
A1ATD H13 H13 H  0 1 N N N N N N -3.226 17.827 -12.225 -0.986 -0.269 0.772  H13 A1ATD 46 
A1ATD H14 H14 H  0 1 N N N N N N -2.549 16.183 -12.477 -1.168 -0.980 -0.851 H14 A1ATD 47 
A1ATD H15 H15 H  0 1 N N N N N N -1.250 16.978 -14.415 -1.748 1.209  -1.789 H15 A1ATD 48 
A1ATD H16 H16 H  0 1 N N N N N N -5.543 17.330 -16.614 -5.733 1.444  -0.092 H16 A1ATD 49 
A1ATD H17 H17 H  0 1 N N N N N N -3.423 16.924 -21.052 -7.039 -3.275 0.495  H17 A1ATD 50 
A1ATD H18 H18 H  0 1 N N N N N N -2.035 17.211 -19.045 -4.794 -2.720 -0.347 H18 A1ATD 51 
A1ATD H19 H19 H  0 1 N N N N N N -1.371 19.123 -15.350 -1.942 3.194  -0.299 H19 A1ATD 52 
A1ATD H20 H20 H  0 1 N N N N N N -2.654 19.630 -14.200 -1.301 2.231  1.053  H20 A1ATD 53 
A1ATD H21 H21 H  0 1 N N N N N N 0.280  19.266 -13.742 0.155  2.780  -1.573 H21 A1ATD 54 
A1ATD H22 H22 H  0 1 N N N N N N -0.105 19.483 -11.334 2.056  1.682  -0.488 H22 A1ATD 55 
A1ATD H23 H23 H  0 1 N N N N N N -1.878 19.627 -11.584 1.115  1.464  1.010  H23 A1ATD 56 
A1ATD H24 H24 H  0 1 N N N N N N -0.844 14.592 -12.823 3.862  -0.273 -3.051 H24 A1ATD 57 
A1ATD H25 H25 H  0 1 N N N N N N -1.811 14.810 -11.325 2.816  -1.717 -3.005 H25 A1ATD 58 
A1ATD H26 H26 H  0 1 N N N N N N -1.599 12.544 -11.361 4.132  -2.671 -1.179 H26 A1ATD 59 
A1ATD H27 H27 H  0 1 N N N N N N 0.011  12.587 -12.155 5.241  -2.218 -2.496 H27 A1ATD 60 
A1ATD H28 H28 H  0 1 N N N N N N -0.674 21.616 -14.424 -0.087 4.767  -0.054 H28 A1ATD 61 
A1ATD H29 H29 H  0 1 N N N N N N -1.415 21.629 -12.787 0.688  3.827  1.243  H29 A1ATD 62 
A1ATD H31 H31 H  0 1 N N N N N N -1.841 17.653 -16.733 -3.418 -0.850 -1.411 H31 A1ATD 63 
A1ATD H32 H32 H  0 1 N N N N N N 0.786  22.413 -12.783 2.273  5.127  0.016  H32 A1ATD 64 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
A1ATD CL1 C17 SING N N 1  
A1ATD C19 C17 DOUB Y N 2  
A1ATD C19 C20 SING Y N 3  
A1ATD C17 C15 SING Y N 4  
A1ATD C20 C13 DOUB Y N 5  
A1ATD C15 F16 SING N N 6  
A1ATD C15 C14 DOUB Y N 7  
A1ATD C13 C14 SING Y N 8  
A1ATD C13 N12 SING N N 9  
A1ATD N12 C10 SING N N 10 
A1ATD C10 O11 DOUB N N 11 
A1ATD C10 C09 SING N N 12 
A1ATD C21 C09 SING N N 13 
A1ATD C21 C22 SING N N 14 
A1ATD C09 C08 SING N N 15 
A1ATD C22 C27 SING N N 16 
A1ATD C22 C23 SING N N 17 
A1ATD C27 O28 SING N N 18 
A1ATD C08 N07 SING N N 19 
A1ATD C23 N07 SING N N 20 
A1ATD N07 C06 SING N N 21 
A1ATD C25 C26 SING N N 22 
A1ATD C25 N05 SING N N 23 
A1ATD C26 N02 SING N N 24 
A1ATD C06 N05 SING N N 25 
A1ATD C06 O24 DOUB N N 26 
A1ATD N05 C04 SING N N 27 
A1ATD C04 C03 SING N N 28 
A1ATD N02 C03 SING N N 29 
A1ATD N02 C01 SING N N 30 
A1ATD C01 CD  SING N N 31 
A1ATD CD  NE  SING N N 32 
A1ATD NH2 CZ  DOUB N N 33 
A1ATD NE  CZ  SING N N 34 
A1ATD CZ  NH1 SING N N 35 
A1ATD CD  H1  SING N N 36 
A1ATD CD  H2  SING N N 37 
A1ATD NE  H3  SING N N 38 
A1ATD NH1 H4  SING N N 39 
A1ATD NH1 H5  SING N N 40 
A1ATD NH2 H6  SING N N 41 
A1ATD C01 H7  SING N N 42 
A1ATD C01 H8  SING N N 43 
A1ATD C03 H9  SING N N 44 
A1ATD C03 H10 SING N N 45 
A1ATD C04 H11 SING N N 46 
A1ATD C04 H12 SING N N 47 
A1ATD C08 H13 SING N N 48 
A1ATD C08 H14 SING N N 49 
A1ATD C09 H15 SING N N 50 
A1ATD C14 H16 SING N N 51 
A1ATD C19 H17 SING N N 52 
A1ATD C20 H18 SING N N 53 
A1ATD C21 H19 SING N N 54 
A1ATD C21 H20 SING N N 55 
A1ATD C22 H21 SING N N 56 
A1ATD C23 H22 SING N N 57 
A1ATD C23 H23 SING N N 58 
A1ATD C25 H24 SING N N 59 
A1ATD C25 H25 SING N N 60 
A1ATD C26 H26 SING N N 61 
A1ATD C26 H27 SING N N 62 
A1ATD C27 H28 SING N N 63 
A1ATD C27 H29 SING N N 64 
A1ATD N12 H31 SING N N 65 
A1ATD O28 H32 SING N N 66 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
A1ATD SMILES           ACDLabs              12.01 "Clc1ccc(cc1F)NC(=O)C1CN(CC(CO)C1)C(=O)N1CCN(CCNC(=N)N)CC1"                                                                                                                                      
A1ATD InChI            InChI                1.06  "InChI=1S/C21H31ClFN7O3/c22-17-2-1-16(10-18(17)23)27-19(32)15-9-14(13-31)11-30(12-15)21(33)29-7-5-28(6-8-29)4-3-26-20(24)25/h1-2,10,14-15,31H,3-9,11-13H2,(H,27,32)(H4,24,25,26)/t14-,15+/m1/s1" 
A1ATD InChIKey         InChI                1.06  JNRCFZSAWRPICW-CABCVRRESA-N                                                                                                                                                                      
A1ATD SMILES_CANONICAL CACTVS               3.385 "NC(=N)NCCN1CCN(CC1)C(=O)N2C[C@H](CO)C[C@@H](C2)C(=O)Nc3ccc(Cl)c(F)c3"                                                                                                                           
A1ATD SMILES           CACTVS               3.385 "NC(=N)NCCN1CCN(CC1)C(=O)N2C[CH](CO)C[CH](C2)C(=O)Nc3ccc(Cl)c(F)c3"                                                                                                                              
A1ATD SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[H]/N=C(/N)\NCCN1CCN(CC1)C(=O)N2C[C@@H](C[C@@H](C2)C(=O)Nc3ccc(c(c3)F)Cl)CO"                                                                                                                    
A1ATD SMILES           "OpenEye OEToolkits" 2.0.7 "c1cc(c(cc1NC(=O)C2CC(CN(C2)C(=O)N3CCN(CC3)CCNC(=N)N)CO)F)Cl"                                                                                                                                    
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
A1ATD "SYSTEMATIC NAME" ACDLabs              12.01 "(3S,5R)-1-[4-(2-carbamimidamidoethyl)piperazine-1-carbonyl]-N-(4-chloro-3-fluorophenyl)-5-(hydroxymethyl)piperidine-3-carboxamide"                  
A1ATD "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(3~{S},5~{R})-1-[4-(2-carbamimidamidoethyl)piperazin-1-yl]carbonyl-~{N}-(4-chloranyl-3-fluoranyl-phenyl)-5-(hydroxymethyl)piperidine-3-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
A1ATD "Create component" 2024-05-28 RCSB 
A1ATD "Initial release"  2025-04-02 RCSB 
# 
