data_A1A2F
# 
_chem_comp.id                                    A1A2F 
_chem_comp.name                                  "[(2R,3S)-3-methyl-1-(7H-pyrrolo[2,3-d]pyrimidin-4-yl)piperidin-2-yl]methanol" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C13 H18 N4 O" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2024-08-16 
_chem_comp.pdbx_modified_date                    2025-05-16 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        246.308 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     A1A2F 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        9D6G 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
A1A2F N2  N1  N 0 1 Y N N N N N 14.316 -0.125 4.090  -0.686 -1.775 0.198  N2  A1A2F 1  
A1A2F C3  C1  C 0 1 N N N N N N 14.514 -0.489 -0.798 3.781  -0.313 0.573  C3  A1A2F 2  
A1A2F C6  C2  C 0 1 Y N N N N N 14.478 0.917  3.227  -0.401 -0.482 0.322  C6  A1A2F 3  
A1A2F C9  C3  C 0 1 Y N N N N N 14.981 2.133  3.716  -1.463 0.435  0.335  C9  A1A2F 4  
A1A2F C12 C4  C 0 1 N N R N N N 13.422 -0.514 1.493  1.678  -0.385 -0.771 C12 A1A2F 5  
A1A2F C1  C5  C 0 1 N N N N N N 13.375 -2.612 -0.046 2.957  1.753  -0.568 C1  A1A2F 6  
A1A2F C10 C6  C 0 1 Y N N N N N 15.315 3.458  3.272  -1.575 1.888  0.448  C10 A1A2F 7  
A1A2F C11 C7  C 0 1 Y N N N N N 15.788 4.158  4.348  -2.885 2.182  0.396  C11 A1A2F 8  
A1A2F C13 C8  C 0 1 N N N N N N 12.029 -0.125 0.997  0.962  0.171  -2.003 C13 A1A2F 9  
A1A2F C2  C9  C 0 1 N N S N N N 14.183 -1.347 0.377  3.076  0.231  -0.672 C2  A1A2F 10 
A1A2F C4  C10 C 0 1 N N N N N N 15.298 0.694  -0.342 2.936  0.005  1.809  C4  A1A2F 11 
A1A2F C5  C11 C 0 1 N N N N N N 14.647 1.509  0.792  1.542  -0.604 1.639  C5  A1A2F 12 
A1A2F C7  C12 C 0 1 Y N N N N N 14.656 0.020  5.393  -1.935 -2.190 0.090  C7  A1A2F 13 
A1A2F C8  C13 C 0 1 Y N N N N N 15.276 2.127  5.116  -2.778 -0.053 0.217  C8  A1A2F 14 
A1A2F N1  N2  N 0 1 N N N N N N 14.137 0.686  1.910  0.909  -0.052 0.435  N1  A1A2F 15 
A1A2F N3  N3  N 0 1 Y N N N N N 15.118 1.104  5.990  -2.961 -1.367 0.098  N3  A1A2F 16 
A1A2F N4  N4  N 0 1 Y N N N N N 15.754 3.363  5.488  -3.614 1.029  0.257  N4  A1A2F 17 
A1A2F O1  O1  O 0 1 N N N N N N 11.353 0.566  2.041  -0.280 -0.512 -2.181 O1  A1A2F 18 
A1A2F H6  H1  H 0 1 N N N N N N 13.584 -0.150 -1.278 3.901  -1.393 0.481  H6  A1A2F 19 
A1A2F H7  H2  H 0 1 N N N N N N 15.109 -1.068 -1.519 4.760  0.155  0.671  H7  A1A2F 20 
A1A2F H2  H3  H 0 1 N N N N N N 13.298 -1.174 2.364  1.764  -1.468 -0.859 H2  A1A2F 21 
A1A2F H3  H4  H 0 1 N N N N N N 13.150 -3.218 0.844  3.953  2.191  -0.495 H3  A1A2F 22 
A1A2F H5  H5  H 0 1 N N N N N N 12.435 -2.303 -0.526 2.455  2.140  -1.455 H5  A1A2F 23 
A1A2F H4  H6  H 0 1 N N N N N N 13.970 -3.207 -0.754 2.379  2.012  0.319  H4  A1A2F 24 
A1A2F H13 H7  H 0 1 N N N N N N 15.211 3.835  2.265  -0.762 2.591  0.554  H13 A1A2F 25 
A1A2F H14 H8  H 0 1 N N N N N N 16.137 5.180  4.316  -3.301 3.176  0.454  H14 A1A2F 26 
A1A2F H17 H9  H 0 1 N N N N N N 12.118 0.529  0.117  0.773  1.236  -1.864 H17 A1A2F 27 
A1A2F H16 H10 H 0 1 N N N N N N 11.466 -1.030 0.726  1.587  0.025  -2.884 H16 A1A2F 28 
A1A2F H1  H11 H 0 1 N N N N N N 15.126 -1.695 0.823  3.652  -0.029 -1.560 H1  A1A2F 29 
A1A2F H8  H12 H 0 1 N N N N N N 16.277 0.339  0.012  3.412  -0.417 2.694  H8  A1A2F 30 
A1A2F H9  H13 H 0 1 N N N N N N 15.440 1.362  -1.204 2.849  1.086  1.922  H9  A1A2F 31 
A1A2F H11 H14 H 0 1 N N N N N N 15.398 2.207  1.191  1.629  -1.686 1.539  H11 A1A2F 32 
A1A2F H10 H15 H 0 1 N N N N N N 13.806 2.078  0.370  0.933  -0.367 2.511  H10 A1A2F 33 
A1A2F H12 H16 H 0 1 N N N N N N 14.535 -0.853 6.017  -2.122 -3.249 -0.008 H12 A1A2F 34 
A1A2F H15 H17 H 0 1 N N N N N N 16.027 3.639  6.410  -4.581 0.986  0.197  H15 A1A2F 35 
A1A2F H18 H18 H 0 1 N N N N N N 10.485 0.814  1.747  -0.789 -0.210 -2.946 H18 A1A2F 36 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
A1A2F C3  C4  SING N N 1  
A1A2F C3  C2  SING N N 2  
A1A2F C4  C5  SING N N 3  
A1A2F C1  C2  SING N N 4  
A1A2F C2  C12 SING N N 5  
A1A2F C5  N1  SING N N 6  
A1A2F C13 C12 SING N N 7  
A1A2F C13 O1  SING N N 8  
A1A2F C12 N1  SING N N 9  
A1A2F N1  C6  SING N N 10 
A1A2F C6  C9  DOUB Y N 11 
A1A2F C6  N2  SING Y N 12 
A1A2F C10 C9  SING Y N 13 
A1A2F C10 C11 DOUB Y N 14 
A1A2F C9  C8  SING Y N 15 
A1A2F N2  C7  DOUB Y N 16 
A1A2F C11 N4  SING Y N 17 
A1A2F C8  N4  SING Y N 18 
A1A2F C8  N3  DOUB Y N 19 
A1A2F C7  N3  SING Y N 20 
A1A2F C3  H6  SING N N 21 
A1A2F C3  H7  SING N N 22 
A1A2F C12 H2  SING N N 23 
A1A2F C1  H3  SING N N 24 
A1A2F C1  H5  SING N N 25 
A1A2F C1  H4  SING N N 26 
A1A2F C10 H13 SING N N 27 
A1A2F C11 H14 SING N N 28 
A1A2F C13 H17 SING N N 29 
A1A2F C13 H16 SING N N 30 
A1A2F C2  H1  SING N N 31 
A1A2F C4  H8  SING N N 32 
A1A2F C4  H9  SING N N 33 
A1A2F C5  H11 SING N N 34 
A1A2F C5  H10 SING N N 35 
A1A2F C7  H12 SING N N 36 
A1A2F N4  H15 SING N N 37 
A1A2F O1  H18 SING N N 38 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
A1A2F SMILES           ACDLabs              12.01 "OCC1C(C)CCCN1c1ncnc2[NH]ccc12"                                                                                                     
A1A2F InChI            InChI                1.06  "InChI=1S/C13H18N4O/c1-9-3-2-6-17(11(9)7-18)13-10-4-5-14-12(10)15-8-16-13/h4-5,8-9,11,18H,2-3,6-7H2,1H3,(H,14,15,16)/t9-,11-/m0/s1" 
A1A2F InChIKey         InChI                1.06  GXQARUAFSUJAQV-ONGXEEELSA-N                                                                                                         
A1A2F SMILES_CANONICAL CACTVS               3.385 "C[C@H]1CCCN([C@H]1CO)c2ncnc3[nH]ccc23"                                                                                             
A1A2F SMILES           CACTVS               3.385 "C[CH]1CCCN([CH]1CO)c2ncnc3[nH]ccc23"                                                                                               
A1A2F SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H]1CCCN([C@H]1CO)c2c3cc[nH]c3ncn2"                                                                                             
A1A2F SMILES           "OpenEye OEToolkits" 2.0.7 "CC1CCCN(C1CO)c2c3cc[nH]c3ncn2"                                                                                                     
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
A1A2F "SYSTEMATIC NAME" ACDLabs              12.01 "[(2R,3S)-3-methyl-1-(7H-pyrrolo[2,3-d]pyrimidin-4-yl)piperidin-2-yl]methanol"          
A1A2F "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[(2~{R},3~{S})-3-methyl-1-(7~{H}-pyrrolo[2,3-d]pyrimidin-4-yl)piperidin-2-yl]methanol" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
A1A2F "Create component" 2024-08-16 RCSB 
A1A2F "Initial release"  2025-05-21 RCSB 
# 
