data_A1ALF
# 
_chem_comp.id                                    A1ALF 
_chem_comp.name                                  "N-[(2R)-1-({(2S)-1-amino-3-[(2S,3R)-2-hydroxypyrrolidin-3-yl]propan-2-yl}amino)-4-methyl-1-oxopentan-2-yl]-4'-ethoxy[1,1'-biphenyl]-4-carboxamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C28 H40 N4 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2024-04-08 
_chem_comp.pdbx_modified_date                    2025-04-11 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        496.642 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     A1ALF 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        9BBQ 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
A1ALF C13  C1  C 0 1 N N R N N N 125.635 -27.827 21.863 -2.205 -1.211 -0.051 C13  A1ALF 1  
A1ALF C15  C2  C 0 1 N N N N N N 127.828 -28.478 22.961 -1.605 -3.595 -0.497 C15  A1ALF 2  
A1ALF C17  C3  C 0 1 N N N N N N 128.486 -29.379 23.976 -2.155 -3.534 -1.923 C17  A1ALF 3  
A1ALF C20  C4  C 0 1 Y N N N N N 125.305 -23.882 22.450 1.528  -0.741 -0.579 C20  A1ALF 4  
A1ALF C21  C5  C 0 1 Y N N N N N 124.278 -22.897 22.499 2.484  -1.043 -1.553 C21  A1ALF 5  
A1ALF C22  C6  C 0 1 Y N N N N N 124.541 -21.655 23.040 3.800  -0.692 -1.356 C22  A1ALF 6  
A1ALF C24  C7  C 0 1 Y N N N N N 126.188 -19.952 24.170 5.598  0.342  0.025  C24  A1ALF 7  
A1ALF C26  C8  C 0 1 Y N N N N N 127.322 -18.529 25.814 7.301  1.343  1.390  C26  A1ALF 8  
A1ALF C02  C9  C 0 1 N N S N N N 121.370 -25.738 18.422 -7.529 1.600  -1.436 C02  A1ALF 9  
A1ALF C04  C10 C 0 1 N N N N N N 119.482 -25.745 19.996 -6.262 3.632  -1.568 C04  A1ALF 10 
A1ALF C05  C11 C 0 1 N N N N N N 120.342 -26.740 20.340 -5.883 2.920  -0.246 C05  A1ALF 11 
A1ALF C06  C12 C 0 1 N N R N N N 121.636 -26.649 19.369 -6.267 1.450  -0.559 C06  A1ALF 12 
A1ALF C07  C13 C 0 1 N N N N N N 121.988 -28.088 18.731 -6.591 0.689  0.728  C07  A1ALF 13 
A1ALF C08  C14 C 0 1 N N S N N N 122.541 -29.122 19.819 -5.298 0.425  1.503  C08  A1ALF 14 
A1ALF C09  C15 C 0 1 N N N N N N 122.594 -30.547 19.227 -5.631 -0.238 2.840  C09  A1ALF 15 
A1ALF C12  C16 C 0 1 N N N N N N 124.163 -28.231 21.575 -3.095 -0.299 0.754  C12  A1ALF 16 
A1ALF C14  C17 C 0 1 N N N N N N 126.265 -28.802 22.816 -2.414 -2.658 0.402  C14  A1ALF 17 
A1ALF C16  C18 C 0 1 N N N N N N 128.542 -28.466 21.570 -1.713 -5.027 0.031  C16  A1ALF 18 
A1ALF C19  C19 C 0 1 N N N N N N 125.080 -25.299 21.824 0.117  -1.123 -0.785 C19  A1ALF 19 
A1ALF C23  C20 C 0 1 Y N N N N N 125.871 -21.346 23.568 4.180  -0.035 -0.185 C23  A1ALF 20 
A1ALF C25  C21 C 0 1 Y N N N N N 127.040 -19.824 25.287 5.981  0.998  1.195  C25  A1ALF 21 
A1ALF C27  C22 C 0 1 Y N N N N N 126.772 -17.399 25.237 8.250  1.037  0.423  C27  A1ALF 22 
A1ALF C29  C23 C 0 1 N N N N N N 127.037 -14.979 24.887 10.474 1.034  -0.416 C29  A1ALF 23 
A1ALF C30  C24 C 0 1 N N N N N N 125.856 -14.089 25.279 11.878 1.495  -0.021 C30  A1ALF 24 
A1ALF C31  C25 C 0 1 Y N N N N N 125.928 -17.523 24.119 7.873  0.384  -0.743 C31  A1ALF 25 
A1ALF C32  C26 C 0 1 Y N N N N N 125.643 -18.808 23.579 6.554  0.037  -0.944 C32  A1ALF 26 
A1ALF C33  C27 C 0 1 Y N N N N N 126.898 -22.328 23.504 3.227  0.267  0.788  C33  A1ALF 27 
A1ALF C34  C28 C 0 1 Y N N N N N 126.629 -23.571 22.955 1.910  -0.083 0.594  C34  A1ALF 28 
A1ALF N03  N1  N 0 1 N N N N N N 119.847 -25.368 18.541 -7.495 2.953  -2.022 N03  A1ALF 29 
A1ALF N10  N2  N 0 1 N N N N N N 121.480 -31.350 19.692 -4.386 -0.601 3.531  N10  A1ALF 30 
A1ALF N11  N3  N 0 1 N N N N N N 123.845 -28.734 20.199 -4.432 -0.461 0.720  N11  A1ALF 31 
A1ALF N18  N4  N 0 1 N N N N N N 125.765 -26.466 22.424 -0.805 -0.832 0.154  N18  A1ALF 32 
A1ALF O01  O1  O 0 1 N N N N N N 121.713 -26.237 17.090 -8.700 1.449  -0.631 O01  A1ALF 33 
A1ALF O28  O2  O 0 1 N N N N N N 127.079 -16.111 25.804 9.550  1.379  0.618  O28  A1ALF 34 
A1ALF O35  O3  O 0 1 N N N N N N 124.413 -25.443 20.860 -0.214 -1.700 -1.803 O35  A1ALF 35 
A1ALF O36  O4  O 0 1 N N N N N N 123.313 -28.141 22.432 -2.608 0.580  1.432  O36  A1ALF 36 
A1ALF H131 H1  H 0 0 N N N N N N 126.185 -27.869 20.912 -2.454 -1.122 -1.108 H131 A1ALF 37 
A1ALF H151 H2  H 0 0 N N N N N N 127.890 -27.452 23.352 -0.559 -3.286 -0.497 H151 A1ALF 38 
A1ALF H172 H3  H 0 0 N N N N N N 129.555 -29.130 24.050 -3.200 -3.843 -1.923 H172 A1ALF 39 
A1ALF H171 H4  H 0 0 N N N N N N 128.008 -29.237 24.956 -2.078 -2.514 -2.299 H171 A1ALF 40 
A1ALF H173 H5  H 0 0 N N N N N N 128.375 -30.427 23.662 -1.579 -4.202 -2.563 H173 A1ALF 41 
A1ALF H211 H6  H 0 0 N N N N N N 123.295 -23.122 22.113 2.190  -1.552 -2.459 H211 A1ALF 42 
A1ALF H221 H7  H 0 0 N N N N N N 123.762 -20.908 23.074 4.539  -0.924 -2.109 H221 A1ALF 43 
A1ALF H261 H8  H 0 0 N N N N N N 127.971 -18.430 26.672 7.598  1.852  2.296  H261 A1ALF 44 
A1ALF H021 H9  H 0 0 N N N N N N 121.943 -24.818 18.608 -7.521 0.852  -2.228 H021 A1ALF 45 
A1ALF H042 H10 H 0 0 N N N N N N 118.442 -26.099 20.052 -6.456 4.689  -1.388 H042 A1ALF 46 
A1ALF H041 H11 H 0 0 N N N N N N 119.611 -24.879 20.661 -5.469 3.511  -2.306 H041 A1ALF 47 
A1ALF H051 H12 H 0 0 N N N N N N 120.653 -26.617 21.388 -4.815 3.010  -0.047 H051 A1ALF 48 
A1ALF H052 H13 H 0 0 N N N N N N 119.851 -27.716 20.215 -6.468 3.308  0.588  H052 A1ALF 49 
A1ALF H061 H14 H 0 0 N N N N N N 122.492 -26.342 19.988 -5.471 0.953  -1.112 H061 A1ALF 50 
A1ALF H072 H15 H 0 0 N N N N N N 121.076 -28.506 18.279 -7.266 1.285  1.342  H072 A1ALF 51 
A1ALF H071 H16 H 0 0 N N N N N N 122.754 -27.951 17.953 -7.066 -0.260 0.480  H071 A1ALF 52 
A1ALF H081 H17 H 0 0 N N N N N N 121.860 -29.115 20.683 -4.783 1.369  1.683  H081 A1ALF 53 
A1ALF H092 H18 H 0 0 N N N N N N 122.555 -30.481 18.130 -6.200 0.456  3.458  H092 A1ALF 54 
A1ALF H091 H19 H 0 0 N N N N N N 123.535 -31.028 19.533 -6.223 -1.136 2.663  H091 A1ALF 55 
A1ALF H142 H20 H 0 0 N N N N N N 125.781 -28.717 23.800 -2.080 -2.767 1.434  H142 A1ALF 56 
A1ALF H141 H21 H 0 0 N N N N N N 126.137 -29.825 22.431 -3.471 -2.911 0.333  H141 A1ALF 57 
A1ALF H162 H22 H 0 0 N N N N N N 129.610 -28.241 21.707 -1.137 -5.695 -0.609 H162 A1ALF 58 
A1ALF H163 H23 H 0 0 N N N N N N 128.433 -29.452 21.094 -1.321 -5.070 1.048  H163 A1ALF 59 
A1ALF H161 H24 H 0 0 N N N N N N 128.085 -27.697 20.930 -2.759 -5.336 0.031  H161 A1ALF 60 
A1ALF H251 H25 H 0 0 N N N N N N 127.476 -20.702 25.741 5.243  1.237  1.947  H251 A1ALF 61 
A1ALF H292 H26 H 0 0 N N N N N N 126.905 -15.340 23.856 10.179 1.524  -1.344 H292 A1ALF 62 
A1ALF H291 H27 H 0 0 N N N N N N 127.974 -14.407 24.958 10.473 -0.046 -0.559 H291 A1ALF 63 
A1ALF H303 H28 H 0 0 N N N N N N 125.805 -13.226 24.599 11.879 2.576  0.122  H303 A1ALF 64 
A1ALF H301 H29 H 0 0 N N N N N N 124.923 -14.667 25.209 12.173 1.006  0.907  H301 A1ALF 65 
A1ALF H302 H30 H 0 0 N N N N N N 125.991 -13.734 26.311 12.582 1.232  -0.810 H302 A1ALF 66 
A1ALF H311 H31 H 0 0 N N N N N N 125.495 -16.641 23.670 8.613  0.148  -1.492 H311 A1ALF 67 
A1ALF H321 H32 H 0 0 N N N N N N 125.005 -18.900 22.712 6.261  -0.472 -1.850 H321 A1ALF 68 
A1ALF H331 H33 H 0 0 N N N N N N 127.885 -22.105 23.882 3.522  0.775  1.694  H331 A1ALF 69 
A1ALF H341 H34 H 0 0 N N N N N N 127.411 -24.314 22.903 1.172  0.150  1.347  H341 A1ALF 70 
A1ALF H031 H35 H 0 0 N N N N N N 119.705 -24.391 18.381 -7.535 2.911  -3.030 H031 A1ALF 71 
A1ALF H2   H37 H 0 1 N N N N N N 121.539 -32.265 19.294 -4.580 -1.041 4.418  H2   A1ALF 72 
A1ALF H102 H38 H 0 0 N N N N N N 121.511 -31.418 20.689 -3.810 -1.193 2.951  H102 A1ALF 73 
A1ALF H111 H40 H 0 0 N N N N N N 124.582 -28.797 19.526 -4.822 -1.165 0.178  H111 A1ALF 74 
A1ALF H181 H41 H 0 0 N N N N N N 126.334 -26.329 23.235 -0.541 -0.372 0.966  H181 A1ALF 75 
A1ALF H011 H42 H 0 0 N N N N N N 121.514 -25.572 16.441 -9.529 1.532  -1.123 H011 A1ALF 76 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
A1ALF C02 C06  SING N N 1  
A1ALF C02 N03  SING N N 2  
A1ALF C02 O01  SING N N 3  
A1ALF C04 C05  SING N N 4  
A1ALF C04 N03  SING N N 5  
A1ALF C05 C06  SING N N 6  
A1ALF C06 C07  SING N N 7  
A1ALF C07 C08  SING N N 8  
A1ALF C08 C09  SING N N 9  
A1ALF C08 N11  SING N N 10 
A1ALF C09 N10  SING N N 11 
A1ALF C12 C13  SING N N 12 
A1ALF C12 N11  SING N N 13 
A1ALF C12 O36  DOUB N N 14 
A1ALF C13 C14  SING N N 15 
A1ALF C13 N18  SING N N 16 
A1ALF C14 C15  SING N N 17 
A1ALF C15 C16  SING N N 18 
A1ALF C15 C17  SING N N 19 
A1ALF C19 C20  SING N N 20 
A1ALF C19 N18  SING N N 21 
A1ALF C19 O35  DOUB N N 22 
A1ALF C20 C21  DOUB Y N 23 
A1ALF C20 C34  SING Y N 24 
A1ALF C21 C22  SING Y N 25 
A1ALF C22 C23  DOUB Y N 26 
A1ALF C23 C24  SING N N 27 
A1ALF C23 C33  SING Y N 28 
A1ALF C24 C25  DOUB Y N 29 
A1ALF C24 C32  SING Y N 30 
A1ALF C25 C26  SING Y N 31 
A1ALF C26 C27  DOUB Y N 32 
A1ALF C27 C31  SING Y N 33 
A1ALF C27 O28  SING N N 34 
A1ALF C29 C30  SING N N 35 
A1ALF C29 O28  SING N N 36 
A1ALF C31 C32  DOUB Y N 37 
A1ALF C33 C34  DOUB Y N 38 
A1ALF C13 H131 SING N N 39 
A1ALF C15 H151 SING N N 40 
A1ALF C17 H172 SING N N 41 
A1ALF C17 H171 SING N N 42 
A1ALF C17 H173 SING N N 43 
A1ALF C21 H211 SING N N 44 
A1ALF C22 H221 SING N N 45 
A1ALF C26 H261 SING N N 46 
A1ALF C02 H021 SING N N 47 
A1ALF C04 H042 SING N N 48 
A1ALF C04 H041 SING N N 49 
A1ALF C05 H051 SING N N 50 
A1ALF C05 H052 SING N N 51 
A1ALF C06 H061 SING N N 52 
A1ALF C07 H072 SING N N 53 
A1ALF C07 H071 SING N N 54 
A1ALF C08 H081 SING N N 55 
A1ALF C09 H092 SING N N 56 
A1ALF C09 H091 SING N N 57 
A1ALF C14 H142 SING N N 58 
A1ALF C14 H141 SING N N 59 
A1ALF C16 H162 SING N N 60 
A1ALF C16 H163 SING N N 61 
A1ALF C16 H161 SING N N 62 
A1ALF C25 H251 SING N N 63 
A1ALF C29 H292 SING N N 64 
A1ALF C29 H291 SING N N 65 
A1ALF C30 H303 SING N N 66 
A1ALF C30 H301 SING N N 67 
A1ALF C30 H302 SING N N 68 
A1ALF C31 H311 SING N N 69 
A1ALF C32 H321 SING N N 70 
A1ALF C33 H331 SING N N 71 
A1ALF C34 H341 SING N N 72 
A1ALF N03 H031 SING N N 73 
A1ALF N10 H2   SING N N 74 
A1ALF N10 H102 SING N N 75 
A1ALF N11 H111 SING N N 76 
A1ALF N18 H181 SING N N 77 
A1ALF O01 H011 SING N N 78 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
A1ALF SMILES           ACDLabs              12.01 "OC1NCCC1CC(NC(=O)C(CC(C)C)NC(=O)c1ccc(cc1)c1ccc(OCC)cc1)CN"                                                                                                                                         
A1ALF InChI            InChI                1.06  "InChI=1S/C28H40N4O4/c1-4-36-24-11-9-20(10-12-24)19-5-7-21(8-6-19)27(34)32-25(15-18(2)3)28(35)31-23(17-29)16-22-13-14-30-26(22)33/h5-12,18,22-23,25-26,30,33H,4,13-17,29H2,1-3H3,(H,31,35)(H,32,34)" 
A1ALF InChIKey         InChI                1.06  SVNBWMXUUSATBM-UHFFFAOYSA-N                                                                                                                                                                          
A1ALF SMILES_CANONICAL CACTVS               3.385 "CCOc1ccc(cc1)c2ccc(cc2)C(=O)N[C@H](CC(C)C)C(=O)N[C@H](CN)C[C@H]3CCN[C@H]3O"                                                                                                                         
A1ALF SMILES           CACTVS               3.385 "CCOc1ccc(cc1)c2ccc(cc2)C(=O)N[CH](CC(C)C)C(=O)N[CH](CN)C[CH]3CCN[CH]3O"                                                                                                                             
A1ALF SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCOc1ccc(cc1)c2ccc(cc2)C(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](C[C@@H]3CCN[C@@H]3O)CN"                                                                                                                     
A1ALF SMILES           "OpenEye OEToolkits" 2.0.7 "CCOc1ccc(cc1)c2ccc(cc2)C(=O)NC(CC(C)C)C(=O)NC(CC3CCNC3O)CN"                                                                                                                                         
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
A1ALF "SYSTEMATIC NAME" ACDLabs              12.01 "N-[(2R)-1-({(2S)-1-amino-3-[(2S,3R)-2-hydroxypyrrolidin-3-yl]propan-2-yl}amino)-4-methyl-1-oxopentan-2-yl]-4'-ethoxy[1,1'-biphenyl]-4-carboxamide"                  
A1ALF "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}-[(2~{S})-1-[[(2~{S})-1-azanyl-3-[(2~{R},3~{S})-2-oxidanylpyrrolidin-3-yl]propan-2-yl]amino]-4-methyl-1-oxidanylidene-pentan-2-yl]-4-(4-ethoxyphenyl)benzamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
A1ALF "Create component" 2024-04-08 RCSB 
A1ALF "Modify PCM"       2024-09-27 PDBE 
A1ALF "Initial release"  2025-04-16 RCSB 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            A1ALF 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C09 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
