data_I3F
# 
_chem_comp.id                                    I3F 
_chem_comp.name                                  "[1-[6-[(4-methoxyphenyl)amino]pyrimidin-4-yl]pyrazol-4-yl]-[(3R)-3-oxidanylpyrrolidin-1-yl]methanone" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C19 H20 N6 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-07-26 
_chem_comp.pdbx_modified_date                    2025-08-08 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        380.401 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     I3F 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8PQ3 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
I3F C15 C1  C 0 1 N N N N N N 10.324 10.041 16.771 -7.267 1.721  0.247  C15 I3F 1  
I3F C16 C2  C 0 1 N N R N N N 9.907  10.783 18.031 -7.997 0.429  0.701  C16 I3F 2  
I3F C17 C3  C 0 1 N N N N N N 8.447  11.131 17.748 -7.205 -0.661 -0.065 C17 I3F 3  
I3F C18 C4  C 0 1 Y N N N N N 4.660  10.948 6.395  5.723  1.779  -0.658 C18 I3F 4  
I3F C19 C5  C 0 1 Y N N N N N 3.408  10.426 6.132  7.062  1.446  -0.597 C19 I3F 5  
I3F C1  C6  C 0 1 N N N N N N 0.955  9.459  5.511  9.125  -1.209 0.857  C1  I3F 6  
I3F C10 C7  C 0 1 Y N N N N N 7.979  11.401 13.130 -2.171 -1.053 -0.237 C10 I3F 7  
I3F C11 C8  C 0 1 Y N N N N N 7.062  11.323 14.154 -3.370 -0.380 -0.127 C11 I3F 8  
I3F C12 C9  C 0 1 Y N N N N N 5.840  11.083 13.517 -3.066 0.993  0.029  C12 I3F 9  
I3F C13 C10 C 0 1 N N N N N N 7.185  11.401 15.620 -4.716 -0.979 -0.164 C13 I3F 10 
I3F C14 C11 C 0 1 N N N N N N 9.657  10.857 15.682 -5.798 1.264  0.130  C14 I3F 11 
I3F C2  C12 C 0 1 Y N N N N N 3.136  9.099  6.423  7.464  0.306  0.082  C2  I3F 12 
I3F C3  C13 C 0 1 Y N N N N N 4.115  8.306  7.002  6.522  -0.502 0.701  C3  I3F 13 
I3F C4  C14 C 0 1 Y N N N N N 5.364  8.839  7.275  5.182  -0.171 0.641  C4  I3F 14 
I3F C5  C15 C 0 1 Y N N N N N 5.666  10.150 6.925  4.779  0.971  -0.038 C5  I3F 15 
I3F C6  C16 C 0 1 Y N N N N N 7.602  11.042 8.336  2.461  0.315  -0.184 C6  I3F 16 
I3F C7  C17 C 0 1 Y N N N N N 7.011  10.961 9.584  1.105  0.631  -0.115 C7  I3F 17 
I3F C8  C18 C 0 1 Y N N N N N 7.803  11.269 10.673 0.183  -0.403 -0.211 C8  I3F 18 
I3F C9  C19 C 0 1 Y N N N N N 9.557  11.682 9.319  1.912  -1.909 -0.426 C9  I3F 19 
I3F N1  N1  N 0 1 N N N N N N 6.906  10.767 7.187  3.422  1.310  -0.094 N1  I3F 20 
I3F N2  N2  N 0 1 Y N N N N N 9.085  11.640 10.565 0.622  -1.649 -0.365 N2  I3F 21 
I3F N3  N3  N 0 1 Y N N N N N 8.885  11.403 8.204  2.820  -0.959 -0.333 N3  I3F 22 
I3F N4  N4  N 0 1 Y N N N N N 7.291  11.238 11.988 -1.186 -0.138 -0.147 N4  I3F 23 
I3F N5  N5  N 0 1 Y N N N N N 5.958  11.041 12.207 -1.769 1.125  0.012  N5  I3F 24 
I3F N6  N6  N 0 1 N N N N N N 8.348  11.153 16.281 -5.806 -0.196 -0.044 N6  I3F 25 
I3F O1  O1  O 0 1 N N N N N N 1.889  8.597  6.157  8.783  -0.021 0.141  O1  I3F 26 
I3F O2  O2  O 0 1 N N N N N N 6.138  11.656 16.213 -4.844 -2.180 -0.304 O2  I3F 27 
I3F O3  O3  O 0 1 N N N N N N 10.704 11.954 18.168 -9.367 0.446  0.296  O3  I3F 28 
I3F H1  H1  H 0 1 N N N N N N 9.953  9.005  16.777 -7.644 2.058  -0.718 H1  I3F 29 
I3F H2  H2  H 0 1 N N N N N N 11.418 10.038 16.654 -7.371 2.506  0.996  H2  I3F 30 
I3F H3  H3  H 0 1 N N N N N N 9.983  10.126 18.910 -7.912 0.290  1.778  H3  I3F 31 
I3F H4  H4  H 0 1 N N N N N N 8.194  12.115 18.169 -7.293 -1.621 0.443  H4  I3F 32 
I3F H5  H5  H 0 1 N N N N N N 7.777  10.368 18.171 -7.565 -0.741 -1.090 H5  I3F 33 
I3F H6  H6  H 0 1 N N N N N N 4.859  11.989 6.186  5.411  2.670  -1.183 H6  I3F 34 
I3F H7  H7  H 0 1 N N N N N N 2.642  11.052 5.700  7.797  2.075  -1.079 H7  I3F 35 
I3F H8  H8  H 0 1 N N N N N N 0.005  8.925  5.363  8.800  -1.116 1.893  H8  I3F 36 
I3F H9  H9  H 0 1 N N N N N N 0.783  10.347 6.136  8.632  -2.066 0.397  H9  I3F 37 
I3F H10 H10 H 0 1 N N N N N N 1.357  9.770  4.535  10.205 -1.353 0.827  H10 I3F 38 
I3F H11 H11 H 0 1 N N N N N N 9.043  11.562 13.226 -2.044 -2.117 -0.366 H11 I3F 39 
I3F H12 H12 H 0 1 N N N N N N 4.905  10.947 14.041 -3.784 1.792  0.141  H12 I3F 40 
I3F H13 H13 H 0 1 N N N N N N 9.550  10.275 14.755 -5.331 1.737  -0.734 H13 I3F 41 
I3F H14 H14 H 0 1 N N N N N N 10.219 11.779 15.473 -5.254 1.527  1.037  H14 I3F 42 
I3F H15 H15 H 0 1 N N N N N N 3.904  7.274  7.240  6.835  -1.391 1.228  H15 I3F 43 
I3F H16 H16 H 0 1 N N N N N N 6.110  8.230  7.764  4.448  -0.800 1.123  H16 I3F 44 
I3F H17 H17 H 0 1 N N N N N N 5.978  10.670 9.702  0.781  1.653  0.010  H17 I3F 45 
I3F H18 H18 H 0 1 N N N N N N 10.591 11.972 9.202  2.235  -2.932 -0.551 H18 I3F 46 
I3F H19 H19 H 0 1 N N N N N N 7.379  11.068 6.359  3.154  2.242  -0.069 H19 I3F 47 
I3F H20 H20 H 0 1 N N N N N N 10.448 12.422 18.954 -9.864 -0.341 0.557  H20 I3F 48 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
I3F C1  O1  SING N N 1  
I3F C19 C18 DOUB Y N 2  
I3F C19 C2  SING Y N 3  
I3F O1  C2  SING N N 4  
I3F C18 C5  SING Y N 5  
I3F C2  C3  DOUB Y N 6  
I3F C5  N1  SING N N 7  
I3F C5  C4  DOUB Y N 8  
I3F C3  C4  SING Y N 9  
I3F N1  C6  SING N N 10 
I3F N3  C6  DOUB Y N 11 
I3F N3  C9  SING Y N 12 
I3F C6  C7  SING Y N 13 
I3F C9  N2  DOUB Y N 14 
I3F C7  C8  DOUB Y N 15 
I3F N2  C8  SING Y N 16 
I3F C8  N4  SING N N 17 
I3F N4  N5  SING Y N 18 
I3F N4  C10 SING Y N 19 
I3F N5  C12 DOUB Y N 20 
I3F C10 C11 DOUB Y N 21 
I3F C12 C11 SING Y N 22 
I3F C11 C13 SING N N 23 
I3F C13 O2  DOUB N N 24 
I3F C13 N6  SING N N 25 
I3F C14 N6  SING N N 26 
I3F C14 C15 SING N N 27 
I3F N6  C17 SING N N 28 
I3F C15 C16 SING N N 29 
I3F C17 C16 SING N N 30 
I3F C16 O3  SING N N 31 
I3F C15 H1  SING N N 32 
I3F C15 H2  SING N N 33 
I3F C16 H3  SING N N 34 
I3F C17 H4  SING N N 35 
I3F C17 H5  SING N N 36 
I3F C18 H6  SING N N 37 
I3F C19 H7  SING N N 38 
I3F C1  H8  SING N N 39 
I3F C1  H9  SING N N 40 
I3F C1  H10 SING N N 41 
I3F C10 H11 SING N N 42 
I3F C12 H12 SING N N 43 
I3F C14 H13 SING N N 44 
I3F C14 H14 SING N N 45 
I3F C3  H15 SING N N 46 
I3F C4  H16 SING N N 47 
I3F C7  H17 SING N N 48 
I3F C9  H18 SING N N 49 
I3F N1  H19 SING N N 50 
I3F O3  H20 SING N N 51 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
I3F InChI            InChI                1.06  "InChI=1S/C19H20N6O3/c1-28-16-4-2-14(3-5-16)23-17-8-18(21-12-20-17)25-10-13(9-22-25)19(27)24-7-6-15(26)11-24/h2-5,8-10,12,15,26H,6-7,11H2,1H3,(H,20,21,23)/t15-/m1/s1" 
I3F InChIKey         InChI                1.06  XCPMHUGYOPFVKI-OAHLLOKOSA-N                                                                                                                                            
I3F SMILES_CANONICAL CACTVS               3.385 "COc1ccc(Nc2cc(ncn2)n3cc(cn3)C(=O)N4CC[C@@H](O)C4)cc1"                                                                                                                 
I3F SMILES           CACTVS               3.385 "COc1ccc(Nc2cc(ncn2)n3cc(cn3)C(=O)N4CC[CH](O)C4)cc1"                                                                                                                   
I3F SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "COc1ccc(cc1)Nc2cc(ncn2)n3cc(cn3)C(=O)N4CC[C@H](C4)O"                                                                                                                  
I3F SMILES           "OpenEye OEToolkits" 2.0.7 "COc1ccc(cc1)Nc2cc(ncn2)n3cc(cn3)C(=O)N4CCC(C4)O"                                                                                                                      
# 
_pdbx_chem_comp_identifier.comp_id           I3F 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "[1-[6-[(4-methoxyphenyl)amino]pyrimidin-4-yl]pyrazol-4-yl]-[(3~{R})-3-oxidanylpyrrolidin-1-yl]methanone" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
I3F "Create component"   2023-07-26 PDBE 
I3F "Other modification" 2023-07-26 PDBE 
I3F "Initial release"    2025-08-13 RCSB 
# 
