data_XQF
# 
_chem_comp.id                                    XQF 
_chem_comp.name                                  "(2~{R})-~{N}-[4,4-bis(fluoranyl)cyclohexyl]-2-[(2-chloranyl-2-fluoranyl-ethanoyl)-[4-(trifluoromethyloxy)phenyl]amino]-2-pyrimidin-5-yl-propanamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C22 H21 Cl F6 N4 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-11-08 
_chem_comp.pdbx_modified_date                    2025-05-02 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        538.871 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     XQF 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8WZ0 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
XQF C4  C1  C  0 1 Y N N N N N -15.306 2.127  -44.163 3.927  -0.086 1.745  C4  XQF 1  
XQF C5  C2  C  0 1 Y N N N N N -14.800 1.765  -42.922 2.619  0.354  1.682  C5  XQF 2  
XQF C6  C3  C  0 1 Y N N N N N -15.575 1.927  -41.782 1.839  0.053  0.574  C6  XQF 3  
XQF C7  C4  C  0 1 Y N N N N N -16.851 2.477  -41.897 2.373  -0.690 -0.470 C7  XQF 4  
XQF C10 C5  C  0 1 N N N N N N -15.378 -0.811 -41.062 -1.480 0.616  -0.871 C10 XQF 5  
XQF C13 C6  C  0 1 Y N N N N N -14.278 -0.269 -39.041 0.091  2.508  -0.785 C13 XQF 6  
XQF C20 C7  C  0 1 N N S N N N -14.149 3.850  -40.316 -1.737 0.768  1.503  C20 XQF 7  
XQF C26 C8  C  0 1 N N N N N N -16.778 -4.082 -41.851 -3.284 -2.595 -1.106 C26 XQF 8  
XQF C28 C9  C  0 1 N N N N N N -17.128 -4.625 -44.280 -5.619 -2.618 -0.218 C28 XQF 9  
XQF C1  C10 C  0 1 N N N N N N -17.065 2.258  -46.670 6.235  -2.012 -0.350 C1  XQF 10 
XQF C2  C11 C  0 1 Y N N N N N -17.350 2.843  -43.127 3.681  -1.130 -0.405 C2  XQF 11 
XQF C3  C12 C  0 1 Y N N N N N -16.592 2.664  -44.280 4.462  -0.824 0.700  C3  XQF 12 
XQF N8  N1  N  0 1 N N N N N N -15.127 1.573  -40.489 0.512  0.499  0.510  N8  XQF 13 
XQF C9  C13 C  0 1 N N R N N N -15.415 0.218  -39.941 -0.030 1.006  -0.754 C9  XQF 14 
XQF N11 N2  N  0 1 N N N N N N -16.301 -1.789 -41.190 -1.854 -0.662 -0.661 N11 XQF 15 
XQF C12 C14 C  0 1 N N N N N N -16.168 -2.754 -42.283 -3.233 -1.076 -0.932 C12 XQF 16 
XQF C14 C15 C  0 1 Y N N N N N -12.957 -0.251 -39.516 0.689  3.194  0.260  C14 XQF 17 
XQF N15 N3  N  0 1 Y N N N N N -11.958 -0.671 -38.756 0.782  4.512  0.195  N15 XQF 18 
XQF C16 C16 C  0 1 Y N N N N N -12.197 -1.134 -37.547 0.315  5.172  -0.846 C16 XQF 19 
XQF N17 N4  N  0 1 Y N N N N N -13.423 -1.186 -37.051 -0.260 4.553  -1.857 N17 XQF 20 
XQF C18 C17 C  0 1 Y N N N N N -14.471 -0.774 -37.752 -0.388 3.236  -1.862 C18 XQF 21 
XQF C19 C18 C  0 1 N N N N N N -14.489 2.510  -39.745 -0.266 0.462  1.610  C19 XQF 22 
XQF F22 F1  F  0 1 N N N N N N -14.093 4.824  -39.339 -2.294 0.837  2.784  F22 XQF 23 
XQF C23 C19 C  0 1 N N N N N N -16.782 0.263  -39.244 0.756  0.407  -1.922 C23 XQF 24 
XQF O24 O1  O  0 1 N N N N N N -14.103 2.264  -38.627 0.219  0.182  2.686  O24 XQF 25 
XQF O25 O2  O  0 1 N N N N N N -14.465 -0.800 -41.869 -2.312 1.452  -1.153 O25 XQF 26 
XQF C27 C20 C  0 1 N N N N N N -16.561 -5.128 -42.948 -4.724 -3.027 -1.389 C27 XQF 27 
XQF C29 C21 C  0 1 N N N N N N -16.579 -3.242 -44.651 -5.568 -1.099 -0.044 C29 XQF 28 
XQF C30 C22 C  0 1 N N N N N N -16.878 -2.244 -43.535 -4.128 -0.666 0.239  C30 XQF 29 
XQF F31 F2  F  0 1 N N N N N N -16.756 -5.528 -45.279 -6.936 -3.013 -0.477 F31 XQF 30 
XQF F32 F3  F  0 1 N N N N N N -18.526 -4.563 -44.169 -5.168 -3.237 0.953  F32 XQF 31 
XQF O33 O3  O  0 1 N N N N N N -17.126 3.057  -45.478 5.749  -1.258 0.762  O33 XQF 32 
XQF F34 F4  F  0 1 N N N N N N -17.864 2.826  -47.667 7.566  -2.375 -0.121 F34 XQF 33 
XQF F35 F5  F  0 1 N N N N N N -15.768 2.212  -47.151 5.457  -3.165 -0.507 F35 XQF 34 
XQF F36 F6  F  0 1 N N N N N N -17.485 0.950  -46.442 6.156  -1.235 -1.510 F36 XQF 35 
XQF H1  H1  H  0 1 N N N N N N -14.700 1.993  -45.047 4.534  0.147  2.607  H1  XQF 36 
XQF H2  H2  H  0 1 N N N N N N -13.803 1.357  -42.844 2.204  0.932  2.495  H2  XQF 37 
XQF H3  H3  H  0 1 N N N N N N -17.454 2.617  -41.012 1.766  -0.925 -1.332 H3  XQF 38 
XQF H4  H4  H  0 1 N N N N N N -14.805 4.110  -41.160 -2.232 -0.019 0.933  H4  XQF 39 
XQF H6  H6  H  0 1 N N N N N N -17.856 -3.951 -41.679 -2.646 -2.887 -1.941 H6  XQF 40 
XQF H7  H7  H  0 1 N N N N N N -16.297 -4.421 -40.922 -2.932 -3.077 -0.194 H7  XQF 41 
XQF H8  H8  H  0 1 N N N N N N -18.338 3.273  -43.197 4.096  -1.709 -1.217 H8  XQF 42 
XQF H9  H9  H  0 1 N N N N N N -17.064 -1.853 -40.547 -1.209 -1.307 -0.331 H9  XQF 43 
XQF H10 H10 H  0 1 N N N N N N -15.104 -2.909 -42.515 -3.584 -0.594 -1.844 H10 XQF 44 
XQF H11 H11 H  0 1 N N N N N N -12.753 0.110  -40.513 1.074  2.660  1.116  H11 XQF 45 
XQF H12 H12 H  0 1 N N N N N N -11.371 -1.481 -36.944 0.405  6.248  -0.870 H12 XQF 46 
XQF H13 H13 H  0 1 N N N N N N -15.464 -0.828 -37.331 -0.856 2.735  -2.697 H13 XQF 47 
XQF H14 H14 H  0 1 N N N N N N -16.762 1.018  -38.444 0.567  0.990  -2.824 H14 XQF 48 
XQF H15 H15 H  0 1 N N N N N N -17.559 0.526  -39.977 1.821  0.428  -1.693 H15 XQF 49 
XQF H16 H16 H  0 1 N N N N N N -17.006 -0.723 -38.811 0.438  -0.623 -2.083 H16 XQF 50 
XQF H17 H17 H  0 1 N N N N N N -17.070 -6.061 -42.666 -5.076 -2.545 -2.301 H17 XQF 51 
XQF H18 H18 H  0 1 N N N N N N -15.483 -5.318 -43.061 -4.761 -4.110 -1.513 H18 XQF 52 
XQF H19 H19 H  0 1 N N N N N N -15.491 -3.309 -44.797 -5.919 -0.616 -0.956 H19 XQF 53 
XQF H20 H20 H  0 1 N N N N N N -17.054 -2.900 -45.582 -6.206 -0.807 0.790  H20 XQF 54 
XQF H21 H21 H  0 1 N N N N N N -16.498 -1.248 -43.806 -3.776 -1.148 1.151  H21 XQF 55 
XQF H22 H22 H  0 1 N N N N N N -17.962 -2.187 -43.359 -4.091 0.416  0.363  H22 XQF 56 
XQF CL1 CL1 CL 0 0 N N N N N N -12.511 3.620  -40.940 -1.963 2.348  0.664  CL1 XQF 57 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
XQF F34 C1  SING N N 1  
XQF F35 C1  SING N N 2  
XQF C1  F36 SING N N 3  
XQF C1  O33 SING N N 4  
XQF O33 C3  SING N N 5  
XQF F31 C28 SING N N 6  
XQF C29 C28 SING N N 7  
XQF C29 C30 SING N N 8  
XQF C28 F32 SING N N 9  
XQF C28 C27 SING N N 10 
XQF C3  C4  DOUB Y N 11 
XQF C3  C2  SING Y N 12 
XQF C4  C5  SING Y N 13 
XQF C30 C12 SING N N 14 
XQF C2  C7  DOUB Y N 15 
XQF C27 C26 SING N N 16 
XQF C5  C6  DOUB Y N 17 
XQF C12 C26 SING N N 18 
XQF C12 N11 SING N N 19 
XQF C7  C6  SING Y N 20 
XQF O25 C10 DOUB N N 21 
XQF C6  N8  SING N N 22 
XQF N11 C10 SING N N 23 
XQF C10 C9  SING N N 24 
XQF N8  C9  SING N N 25 
XQF N8  C19 SING N N 26 
XQF C20 C19 SING N N 27 
XQF C20 F22 SING N N 28 
XQF C9  C23 SING N N 29 
XQF C9  C13 SING N N 30 
XQF C19 O24 DOUB N N 31 
XQF C14 C13 DOUB Y N 32 
XQF C14 N15 SING Y N 33 
XQF C13 C18 SING Y N 34 
XQF N15 C16 DOUB Y N 35 
XQF C18 N17 DOUB Y N 36 
XQF C16 N17 SING Y N 37 
XQF C4  H1  SING N N 38 
XQF C5  H2  SING N N 39 
XQF C7  H3  SING N N 40 
XQF C20 H4  SING N N 41 
XQF C26 H6  SING N N 42 
XQF C26 H7  SING N N 43 
XQF C2  H8  SING N N 44 
XQF N11 H9  SING N N 45 
XQF C12 H10 SING N N 46 
XQF C14 H11 SING N N 47 
XQF C16 H12 SING N N 48 
XQF C18 H13 SING N N 49 
XQF C23 H14 SING N N 50 
XQF C23 H15 SING N N 51 
XQF C23 H16 SING N N 52 
XQF C27 H17 SING N N 53 
XQF C27 H18 SING N N 54 
XQF C29 H19 SING N N 55 
XQF C29 H20 SING N N 56 
XQF C30 H21 SING N N 57 
XQF C30 H22 SING N N 58 
XQF C20 CL1 SING N N 59 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
XQF InChI            InChI                1.06  "InChI=1S/C22H21ClF6N4O3/c1-20(13-10-30-12-31-11-13,19(35)32-14-6-8-21(25,26)9-7-14)33(18(34)17(23)24)15-2-4-16(5-3-15)36-22(27,28)29/h2-5,10-12,14,17H,6-9H2,1H3,(H,32,35)/t17-,20-/m1/s1" 
XQF InChIKey         InChI                1.06  IFNDNNAQPGBKRX-YLJYHZDGSA-N                                                                                                                                                                 
XQF SMILES_CANONICAL CACTVS               3.385 "C[C@](N(C(=O)[C@@H](F)Cl)c1ccc(OC(F)(F)F)cc1)(C(=O)NC2CCC(F)(F)CC2)c3cncnc3"                                                                                                               
XQF SMILES           CACTVS               3.385 "C[C](N(C(=O)[CH](F)Cl)c1ccc(OC(F)(F)F)cc1)(C(=O)NC2CCC(F)(F)CC2)c3cncnc3"                                                                                                                  
XQF SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@](c1cncnc1)(C(=O)NC2CCC(CC2)(F)F)N(c3ccc(cc3)OC(F)(F)F)C(=O)C(F)Cl"                                                                                                                   
XQF SMILES           "OpenEye OEToolkits" 2.0.7 "CC(c1cncnc1)(C(=O)NC2CCC(CC2)(F)F)N(c3ccc(cc3)OC(F)(F)F)C(=O)C(F)Cl"                                                                                                                       
# 
_pdbx_chem_comp_identifier.comp_id           XQF 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(2~{R})-~{N}-[4,4-bis(fluoranyl)cyclohexyl]-2-[(2-chloranyl-2-fluoranyl-ethanoyl)-[4-(trifluoromethyloxy)phenyl]amino]-2-pyrimidin-5-yl-propanamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
XQF "Create component" 2023-11-08 PDBJ 
XQF "Modify PCM"       2024-09-27 PDBE 
XQF "Initial release"  2025-05-07 RCSB 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            XQF 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C20 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
