data_A1JCG
# 
_chem_comp.id                                    A1JCG 
_chem_comp.name                                  "[(2~{R})-2-[[(2~{R},3~{S},4~{R},5~{R})-5-[6-chloranyl-4-(cyclopentylamino)pyrazolo[3,4-d]pyrimidin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methoxy]-1-oxidanyl-3-(2~{H}-1,2,3,4-tetrazol-5-yl)propan-2-yl]phosphonic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C19 H27 Cl N9 O8 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2025-05-07 
_chem_comp.pdbx_modified_date                    2025-11-07 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        575.900 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     A1JCG 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        9R0G 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
A1JCG C5   C1  C  0 1 N N R N N N 82.452 -28.880 -22.574 4.664  0.921  -0.029 C5   A1JCG 1  
A1JCG C6   C2  C  0 1 N N N N N N 82.652 -29.223 -21.072 5.053  1.504  1.332  C6   A1JCG 2  
A1JCG C7   C3  C  0 1 Y N N N N N 82.197 -28.254 -20.007 5.483  0.390  2.251  C7   A1JCG 3  
A1JCG N10  N1  N  0 1 Y N N N N N 81.234 -27.497 -18.282 5.449  -1.156 3.674  N10  A1JCG 4  
A1JCG C12  C4  C  0 1 N N N N N N 82.771 -30.176 -23.346 5.826  0.091  -0.578 C12  A1JCG 5  
A1JCG O14  O1  O  0 1 N N N N N N 81.096 -28.480 -22.857 3.513  0.089  0.121  O14  A1JCG 6  
A1JCG C15  C5  C  0 1 N N N N N N 80.669 -28.297 -24.227 3.023  -0.452 -1.107 C15  A1JCG 7  
A1JCG C16  C6  C  0 1 N N R N N N 79.158 -28.217 -24.312 1.881  -1.428 -0.816 C16  A1JCG 8  
A1JCG C19  C7  C  0 1 N N R N N N 77.712 -26.548 -25.066 -0.434 -1.379 -0.758 C19  A1JCG 9  
A1JCG N22  N2  N  0 1 Y N N N N N 79.361 -25.214 -26.462 -1.599 0.867  -1.089 N22  A1JCG 10 
A1JCG C23  C8  C  0 1 Y N N N N N 79.296 -24.144 -27.201 -2.788 1.367  -0.906 C23  A1JCG 11 
A1JCG C24  C9  C  0 1 Y N N N N N 77.965 -23.635 -27.201 -3.622 0.356  -0.381 C24  A1JCG 12 
A1JCG C27  C10 C  0 1 N N N N N N 78.980 -21.598 -29.335 -7.194 1.314  0.328  C27  A1JCG 13 
A1JCG C30  C11 C  0 1 N N N N N N 79.567 -19.730 -30.780 -7.681 3.128  1.885  C30  A1JCG 14 
A1JCG C31  C12 C  0 1 N N N N N N 78.796 -21.054 -30.753 -7.321 1.622  1.834  C31  A1JCG 15 
A1JCG C33  C13 C  0 1 Y N N N N N 75.266 -23.301 -26.695 -4.665 -1.927 0.574  C33  A1JCG 16 
A1JCG C36  C14 C  0 1 Y N N N N N 77.229 -24.520 -26.371 -2.836 -0.806 -0.260 C36  A1JCG 17 
A1JCG C37  C15 C  0 1 N N R N N N 77.411 -27.827 -25.860 -0.083 -1.729 -2.227 C37  A1JCG 18 
A1JCG C40  C16 C  0 1 N N S N N N 78.719 -28.613 -25.728 1.417  -2.097 -2.123 C40  A1JCG 19 
A1JCG O42  O2  O  0 1 N N N N N N 78.571 -30.031 -25.805 1.579  -3.515 -2.045 O42  A1JCG 20 
A1JCG O1   O3  O  0 1 N N N N N N 84.942 -27.993 -22.691 2.842  2.896  -0.836 O1   A1JCG 21 
A1JCG P2   P1  P  0 1 N N N N N N 83.594 -27.563 -23.108 4.287  2.278  -1.186 P2   A1JCG 22 
A1JCG O3   O4  O  0 1 N N N N N N 83.668 -27.407 -24.700 5.318  3.333  -1.062 O3   A1JCG 23 
A1JCG O4   O5  O  0 1 N N N N N N 83.194 -26.151 -22.457 4.278  1.712  -2.693 O4   A1JCG 24 
A1JCG N8   N3  N  0 1 Y N N N N N 82.586 -26.980 -19.800 6.720  -0.084 2.399  N8   A1JCG 25 
A1JCG N9   N4  N  0 1 Y N N N N N 81.967 -26.548 -18.749 6.667  -1.029 3.276  N9   A1JCG 26 
A1JCG N11  N5  N  0 1 Y N N N N N 81.380 -28.545 -19.019 4.713  -0.293 3.062  N11  A1JCG 27 
A1JCG O13  O6  O  0 1 N N N N N N 81.714 -31.129 -23.208 6.122  -0.973 0.329  O13  A1JCG 28 
A1JCG O18  O7  O  0 1 N N N N N N 78.791 -26.835 -24.158 0.754  -0.714 -0.278 O18  A1JCG 29 
A1JCG N21  N6  N  0 1 Y N N N N N 78.097 -25.464 -25.941 -1.588 -0.478 -0.701 N21  A1JCG 30 
A1JCG C25  C17 C  0 1 Y N N N N N 77.219 -22.544 -27.776 -4.973 0.292  0.012  C25  A1JCG 31 
A1JCG N26  N7  N  0 1 N N N N N N 77.710 -21.556 -28.612 -5.791 1.400  -0.085 N26  A1JCG 32 
A1JCG C28  C18 C  0 1 N N N N N N 79.980 -20.665 -28.614 -8.027 2.376  -0.410 C28  A1JCG 33 
A1JCG C29  C19 C  0 1 N N N N N N 80.708 -19.925 -29.754 -8.632 3.293  0.674  C29  A1JCG 34 
A1JCG N32  N8  N  0 1 Y N N N N N 75.902 -22.438 -27.488 -5.441 -0.860 0.478  N32  A1JCG 35 
A1JCG CL34 CL1 CL 0 0 N N N N N N 73.562 -23.113 -26.363 -5.344 -3.400 1.191  CL34 A1JCG 36 
A1JCG N35  N9  N  0 1 Y N N N N N 75.916 -24.322 -26.153 -3.397 -1.915 0.219  N35  A1JCG 37 
A1JCG O39  O8  O  0 1 N N N N N N 76.306 -28.448 -25.206 -0.852 -2.845 -2.682 O39  A1JCG 38 
A1JCG H1   H1  H  0 1 N N N N N N 82.120 -30.168 -20.889 5.875  2.208  1.204  H1   A1JCG 39 
A1JCG H2   H2  H  0 1 N N N N N N 83.731 -29.375 -20.922 4.196  2.021  1.763  H2   A1JCG 40 
A1JCG H3   H3  H  0 1 N N N N N N 80.645 -27.432 -17.476 5.137  -1.797 4.332  H3   A1JCG 41 
A1JCG H4   H4  H  0 1 N N N N N N 83.701 -30.611 -22.950 5.549  -0.324 -1.547 H4   A1JCG 42 
A1JCG H5   H5  H  0 1 N N N N N N 82.902 -29.937 -24.412 6.705  0.726  -0.692 H5   A1JCG 43 
A1JCG H6   H6  H  0 1 N N N N N N 81.020 -29.147 -24.831 2.657  0.356  -1.740 H6   A1JCG 44 
A1JCG H7   H7  H  0 1 N N N N N N 81.102 -27.365 -24.619 3.828  -0.979 -1.619 H7   A1JCG 45 
A1JCG H8   H8  H  0 1 N N N N N N 78.683 -28.863 -23.559 2.213  -2.185 -0.106 H8   A1JCG 46 
A1JCG H9   H9  H  0 1 N N N N N N 76.812 -26.267 -24.500 -0.626 -2.285 -0.183 H9   A1JCG 47 
A1JCG H10  H10 H  0 1 N N N N N N 80.127 -23.707 -27.735 -3.085 2.383  -1.120 H10  A1JCG 48 
A1JCG H11  H11 H  0 1 N N N N N N 79.382 -22.621 -29.371 -7.585 0.319  0.116  H11  A1JCG 49 
A1JCG H12  H12 H  0 1 N N N N N N 79.975 -19.538 -31.783 -8.194 3.372  2.815  H12  A1JCG 50 
A1JCG H13  H13 H  0 1 N N N N N N 78.916 -18.895 -30.483 -6.789 3.742  1.762  H13  A1JCG 51 
A1JCG H14  H14 H  0 1 N N N N N N 77.730 -20.884 -30.965 -8.116 1.025  2.280  H14  A1JCG 52 
A1JCG H15  H15 H  0 1 N N N N N N 79.210 -21.756 -31.492 -6.374 1.439  2.342  H15  A1JCG 53 
A1JCG H16  H16 H  0 1 N N N N N N 77.199 -27.593 -26.914 -0.228 -0.867 -2.878 H16  A1JCG 54 
A1JCG H17  H17 H  0 1 N N N N N N 79.451 -28.246 -26.462 1.967  -1.696 -2.974 H17  A1JCG 55 
A1JCG H18  H18 H  0 1 N N N N N N 79.422 -30.444 -25.715 1.250  -3.992 -2.818 H18  A1JCG 56 
A1JCG H19  H19 H  0 1 N N N N N N 85.502 -28.067 -23.455 2.575  3.624  -1.413 H19  A1JCG 57 
A1JCG H20  H20 H  0 1 N N N N N N 83.081 -25.505 -23.145 3.692  0.953  -2.824 H20  A1JCG 58 
A1JCG H21  H21 H  0 1 N N N N N N 81.933 -31.917 -23.691 6.850  -1.542 0.044  H21  A1JCG 59 
A1JCG H22  H22 H  0 1 N N N N N N 77.757 -20.733 -28.046 -5.437 2.236  -0.427 H22  A1JCG 60 
A1JCG H23  H23 H  0 1 N N N N N N 80.692 -21.249 -28.012 -7.388 2.956  -1.076 H23  A1JCG 61 
A1JCG H24  H24 H  0 1 N N N N N N 79.449 -19.953 -27.965 -8.823 1.897  -0.981 H24  A1JCG 62 
A1JCG H25  H25 H  0 1 N N N N N N 81.523 -20.535 -30.172 -9.639 2.966  0.932  H25  A1JCG 63 
A1JCG H26  H26 H  0 1 N N N N N N 81.110 -18.960 -29.413 -8.642 4.329  0.335  H26  A1JCG 64 
A1JCG H27  H27 H  0 1 N N N N N N 75.528 -27.916 -25.323 -0.606 -3.158 -3.563 H27  A1JCG 65 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
A1JCG C30 C31  SING N N 1  
A1JCG C30 C29  SING N N 2  
A1JCG C31 C27  SING N N 3  
A1JCG C29 C28  SING N N 4  
A1JCG C27 C28  SING N N 5  
A1JCG C27 N26  SING N N 6  
A1JCG N26 C25  SING N N 7  
A1JCG C25 N32  DOUB Y N 8  
A1JCG C25 C24  SING Y N 9  
A1JCG N32 C33  SING Y N 10 
A1JCG C23 C24  SING Y N 11 
A1JCG C23 N22  DOUB Y N 12 
A1JCG C24 C36  DOUB Y N 13 
A1JCG C33 CL34 SING N N 14 
A1JCG C33 N35  DOUB Y N 15 
A1JCG N22 N21  SING Y N 16 
A1JCG C36 N35  SING Y N 17 
A1JCG C36 N21  SING Y N 18 
A1JCG N21 C19  SING N N 19 
A1JCG C37 C40  SING N N 20 
A1JCG C37 O39  SING N N 21 
A1JCG C37 C19  SING N N 22 
A1JCG O42 C40  SING N N 23 
A1JCG C40 C16  SING N N 24 
A1JCG C19 O18  SING N N 25 
A1JCG O3  P2   DOUB N N 26 
A1JCG C16 C15  SING N N 27 
A1JCG C16 O18  SING N N 28 
A1JCG C15 O14  SING N N 29 
A1JCG C12 O13  SING N N 30 
A1JCG C12 C5   SING N N 31 
A1JCG P2  O1   SING N N 32 
A1JCG P2  C5   SING N N 33 
A1JCG P2  O4   SING N N 34 
A1JCG O14 C5   SING N N 35 
A1JCG C5  C6   SING N N 36 
A1JCG C6  C7   SING N N 37 
A1JCG C7  N8   SING Y N 38 
A1JCG C7  N11  DOUB Y N 39 
A1JCG N8  N9   DOUB Y N 40 
A1JCG N11 N10  SING Y N 41 
A1JCG N9  N10  SING Y N 42 
A1JCG C6  H1   SING N N 43 
A1JCG C6  H2   SING N N 44 
A1JCG N10 H3   SING N N 45 
A1JCG C12 H4   SING N N 46 
A1JCG C12 H5   SING N N 47 
A1JCG C15 H6   SING N N 48 
A1JCG C15 H7   SING N N 49 
A1JCG C16 H8   SING N N 50 
A1JCG C19 H9   SING N N 51 
A1JCG C23 H10  SING N N 52 
A1JCG C27 H11  SING N N 53 
A1JCG C30 H12  SING N N 54 
A1JCG C30 H13  SING N N 55 
A1JCG C31 H14  SING N N 56 
A1JCG C31 H15  SING N N 57 
A1JCG C37 H16  SING N N 58 
A1JCG C40 H17  SING N N 59 
A1JCG O42 H18  SING N N 60 
A1JCG O1  H19  SING N N 61 
A1JCG O4  H20  SING N N 62 
A1JCG O13 H21  SING N N 63 
A1JCG N26 H22  SING N N 64 
A1JCG C28 H23  SING N N 65 
A1JCG C28 H24  SING N N 66 
A1JCG C29 H25  SING N N 67 
A1JCG C29 H26  SING N N 68 
A1JCG O39 H27  SING N N 69 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
A1JCG InChI            InChI                1.06  "InChI=1S/C19H27ClN9O8P/c20-18-23-15(22-9-3-1-2-4-9)10-6-21-29(16(10)24-18)17-14(32)13(31)11(37-17)7-36-19(8-30,38(33,34)35)5-12-25-27-28-26-12/h6,9,11,13-14,17,30-32H,1-5,7-8H2,(H,22,23,24)(H2,33,34,35)(H,25,26,27,28)/t11-,13-,14-,17-,19-/m1/s1" 
A1JCG InChIKey         InChI                1.06  PVVWULAPDGYSNQ-XTKAHFKISA-N                                                                                                                                                                                                                            
A1JCG SMILES_CANONICAL CACTVS               3.385 "OC[C@](Cc1n[nH]nn1)(OC[C@H]2O[C@H]([C@H](O)[C@@H]2O)n3ncc4c(NC5CCCC5)nc(Cl)nc34)[P](O)(O)=O"                                                                                                                                                          
A1JCG SMILES           CACTVS               3.385 "OC[C](Cc1n[nH]nn1)(OC[CH]2O[CH]([CH](O)[CH]2O)n3ncc4c(NC5CCCC5)nc(Cl)nc34)[P](O)(O)=O"                                                                                                                                                                
A1JCG SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1c2c(nc(nc2n(n1)[C@H]3[C@@H]([C@@H]([C@H](O3)CO[C@@](Cc4n[nH]nn4)(CO)P(=O)(O)O)O)O)Cl)NC5CCCC5"                                                                                                                                                      
A1JCG SMILES           "OpenEye OEToolkits" 2.0.7 "c1c2c(nc(nc2n(n1)C3C(C(C(O3)COC(Cc4n[nH]nn4)(CO)P(=O)(O)O)O)O)Cl)NC5CCCC5"                                                                                                                                                                            
# 
_pdbx_chem_comp_identifier.comp_id           A1JCG 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "[(2~{R})-2-[[(2~{R},3~{S},4~{R},5~{R})-5-[6-chloranyl-4-(cyclopentylamino)pyrazolo[3,4-d]pyrimidin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methoxy]-1-oxidanyl-3-(2~{H}-1,2,3,4-tetrazol-5-yl)propan-2-yl]phosphonic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
A1JCG "Create component" 2025-05-07 PDBE 
A1JCG "Initial release"  2025-11-12 RCSB 
# 
