data_SRG
#

_chem_comp.id                                   SRG
_chem_comp.name                                 "(2S)-2-[[(2S)-1-[[(5S,8S,9E)-2,7-dioxo-5-propan-2-yl-1,6-diazacyclododeca-3,9-dien-8-yl]amino]-3-methyl-1-oxo-butan-2-yl]carbamoylamino]-3-methyl-butanoic acid"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C24 H39 N5 O6"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "Syringolin A"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2007-11-20
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       493.596
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    SRG
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       2ZCY
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
SRG  C8    C8    C  0  1  N  N  N  21.417  -161.758  50.526  -3.800  -0.397   0.213  C8    SRG   1  
SRG  C6    C6    C  0  1  N  N  N  23.552  -160.058  46.275  -6.180   2.667  -0.214  C6    SRG   2  
SRG  C5    C5    C  0  1  N  N  N  23.595  -162.437  47.147  -7.204   1.982   1.959  C5    SRG   3  
SRG  C4    C4    C  0  1  N  N  N  22.714  -161.150  47.031  -6.058   1.719   0.980  C4    SRG   4  
SRG  O2    O2    O  0  1  N  N  N  20.216  -159.528  48.306  -7.321  -0.277  -1.463  O2    SRG   5  
SRG  C1    C1    C  0  1  N  N  N  21.435  -159.453  48.482  -7.387   0.070  -0.308  C1    SRG   6  
SRG  C3    C3    C  0  1  N  N  S  22.300  -160.680  48.452  -6.126   0.271   0.492  C3    SRG   7  
SRG  N7    N7    N  0  1  N  N  N  21.524  -161.715  49.170  -4.963  -0.015  -0.351  N7    SRG   8  
SRG  O9    O9    O  0  1  N  N  N  21.969  -160.914  51.238  -3.716  -0.503   1.422  O9    SRG   9  
SRG  N36   N36   N  0  1  N  N  N  20.678  -162.774  51.069  -2.731  -0.666  -0.562  N36   SRG  10  
SRG  C11   C11   C  0  1  N  N  S  20.486  -162.935  52.520  -1.466  -1.080   0.051  C11   SRG  11  
SRG  C12   C12   C  0  1  N  N  N  19.378  -164.033  52.767  -1.487  -2.591   0.292  C12   SRG  12  
SRG  C13   C13   C  0  1  N  N  N  19.078  -164.295  54.271  -2.563  -2.927   1.327  C13   SRG  13  
SRG  C14   C14   C  0  1  N  N  N  19.769  -165.386  52.114  -1.799  -3.312  -1.020  C14   SRG  14  
SRG  C15   C15   C  0  1  N  N  N  21.822  -163.290  53.196  -0.324  -0.734  -0.869  C15   SRG  15  
SRG  O16   O16   O  0  1  N  N  N  22.669  -163.893  52.556  -0.537  -0.509  -2.042  O16   SRG  16  
SRG  N17   N17   N  0  1  N  N  N  21.986  -162.943  54.489   0.934  -0.675  -0.389  N17   SRG  17  
SRG  C18   C18   C  0  1  N  N  S  23.208  -163.268  55.215   2.056  -0.449  -1.303  C18   SRG  18  
SRG  C19   C19   C  0  1  N  N  N  23.122  -162.861  56.680   3.324  -1.012  -0.706  C19   SRG  19  
SRG  O20   O20   O  0  1  N  N  N  22.116  -162.306  57.109   4.156  -1.531  -1.420  O20   SRG  20  
SRG  N21   N21   N  0  1  N  N  N  24.202  -163.173  57.433   3.526  -0.932   0.633  N21   SRG  21  
SRG  C22   C22   C  0  1  N  N  R  24.141  -163.213  58.885   4.924  -1.040   1.102  C22   SRG  22  
SRG  C23   C23   C  0  1  N  N  N  23.961  -164.646  59.477   5.577  -2.293   0.514  C23   SRG  23  
SRG  C24   C24   C  0  1  N  N  N  25.113  -165.589  59.058   6.974  -2.469   1.112  C24   SRG  24  
SRG  C25   C25   C  0  1  N  N  N  22.652  -165.282  58.990   4.722  -3.517   0.846  C25   SRG  25  
SRG  C26   C26   C  0  1  N  N  N  25.427  -162.510  59.387   5.650   0.196   0.618  C26   SRG  26  
SRG  C27   C27   C  0  1  N  N  N  25.641  -161.092  58.722   5.024   1.369   0.679  C27   SRG  27  
SRG  C28   C28   C  0  1  N  N  N  26.938  -161.095  57.912   5.661   2.596   0.186  C28   SRG  28  
SRG  O29   O29   O  0  1  N  N  N  27.867  -161.766  58.386   6.826   2.579  -0.162  O29   SRG  29  
SRG  N30   N30   N  0  1  N  N  N  27.158  -160.428  56.710   4.948   3.748   0.118  N30   SRG  30  
SRG  C31   C31   C  0  1  N  N  N  26.239  -159.584  55.944   3.546   3.731   0.565  C31   SRG  31  
SRG  C32   C32   C  0  1  N  N  N  25.723  -160.297  54.657   2.644   3.281  -0.587  C32   SRG  32  
SRG  C33   C33   C  0  1  N  N  N  24.577  -161.187  55.013   2.370   1.806  -0.448  C33   SRG  33  
SRG  C34   C34   C  0  1  N  N  N  24.433  -162.487  54.709   2.268   1.036  -1.501  C34   SRG  34  
SRG  O35   O35   O  0  1  N  N  N  22.092  -158.303  48.760  -8.585   0.276   0.263  O35   SRG  35  
SRG  H6    H6    H  0  1  N  N  N  23.748  -159.212  46.951  -6.132   3.699   0.134  H6    SRG  36  
SRG  H6A   H6A   H  0  1  N  N  N  24.507  -160.492  45.945  -5.364   2.480  -0.912  H6A   SRG  37  
SRG  H6B   H6B   H  0  1  N  N  N  22.988  -159.704  45.400  -7.133   2.498  -0.717  H6B   SRG  38  
SRG  H5    H5    H  0  1  N  N  N  23.802  -162.832  46.142  -8.157   1.813   1.457  H5    SRG  39  
SRG  H5A   H5A   H  0  1  N  N  N  24.544  -162.188  47.645  -7.117   1.307   2.810  H5A   SRG  40  
SRG  H5B   H5B   H  0  1  N  N  N  23.059  -163.196  47.736  -7.156   3.014   2.307  H5B   SRG  41  
SRG  H4    H4    H  0  1  N  N  N  21.790  -161.345  46.466  -5.106   1.889   1.483  H4    SRG  42  
SRG  H3    H3    H  0  1  N  N  N  23.268  -160.465  48.928  -6.129  -0.402   1.349  H3    SRG  43  
SRG  HN7   HN7   H  0  1  N  N  N  21.056  -162.417  48.633  -5.029   0.069  -1.315  HN7   SRG  44  
SRG  HN36  HN36  H  0  0  N  N  N  20.250  -163.436  50.454  -2.798  -0.585  -1.526  HN36  SRG  45  
SRG  H11   H11   H  0  1  N  N  N  20.143  -161.992  52.970  -1.337  -0.562   1.002  H11   SRG  46  
SRG  H12   H12   H  0  1  N  N  N  18.470  -163.622  52.302  -0.514  -2.913   0.662  H12   SRG  47  
SRG  H13   H13   H  0  1  N  N  N  20.024  -164.357  54.829  -3.547  -2.710   0.911  H13   SRG  48  
SRG  H13A  H13A  H  0  0  N  N  N  18.469  -163.471  54.672  -2.503  -3.985   1.583  H13A  SRG  49  
SRG  H13B  H13B  H  0  0  N  N  N  18.529  -165.242  54.375  -2.406  -2.327   2.223  H13B  SRG  50  
SRG  H14   H14   H  0  1  N  N  N  19.861  -165.255  51.026  -1.032  -3.073  -1.758  H14   SRG  51  
SRG  H14A  H14A  H  0  0  N  N  N  20.731  -165.727  52.525  -1.814  -4.389  -0.849  H14A  SRG  52  
SRG  H14B  H14B  H  0  0  N  N  N  18.992  -166.134  52.328  -2.772  -2.990  -1.390  H14B  SRG  53  
SRG  HN17  HN17  H  0  0  N  N  N  21.253  -162.452  54.960   1.096  -0.781   0.561  HN17  SRG  54  
SRG  H18   H18   H  0  1  N  N  N  23.315  -164.353  55.068   1.855  -0.927  -2.262  H18   SRG  55  
SRG  HN21  HN21  H  0  0  N  N  N  25.067  -163.382  56.978   2.790  -0.809   1.252  HN21  SRG  56  
SRG  H22   H22   H  0  1  N  N  N  23.238  -162.692  59.237   4.949  -1.085   2.191  H22   SRG  57  
SRG  H23   H23   H  0  1  N  N  N  23.953  -164.526  60.570   5.655  -2.187  -0.568  H23   SRG  58  
SRG  H24   H24   H  0  1  N  N  N  25.032  -165.813  57.984   6.896  -2.574   2.194  H24   SRG  59  
SRG  H24A  H24A  H  0  0  N  N  N  26.078  -165.101  59.259   7.439  -3.361   0.692  H24A  SRG  60  
SRG  H24B  H24B  H  0  0  N  N  N  25.048  -166.524  59.633   7.583  -1.596   0.875  H24B  SRG  61  
SRG  H25   H25   H  0  1  N  N  N  21.977  -165.434  59.845   5.187  -4.410   0.427  H25   SRG  62  
SRG  H25A  H25A  H  0  0  N  N  N  22.171  -164.616  58.258   4.644  -3.623   1.928  H25A  SRG  63  
SRG  H25B  H25B  H  0  0  N  N  N  22.869  -166.251  58.518   3.727  -3.392   0.420  H25B  SRG  64  
SRG  H26   H26   H  0  1  N  N  N  26.102  -162.941  60.111   6.651   0.122   0.232  H26   SRG  65  
SRG  H27   H27   H  0  1  N  N  N  24.973  -160.250  58.824   4.037   1.414   1.120  H27   SRG  66  
SRG  HN30  HN30  H  0  0  N  N  N  28.070  -160.541  56.315   5.352   4.564  -0.217  HN30  SRG  67  
SRG  H31   H31   H  0  1  N  N  N  25.375  -159.339  56.580   3.440   3.039   1.400  H31   SRG  68  
SRG  H31A  H31A  H  0  0  N  N  N  26.784  -158.679  55.637   3.255   4.731   0.885  H31A  SRG  69  
SRG  H32   H32   H  0  1  N  N  N  25.391  -159.544  53.927   1.704   3.831  -0.551  H32   SRG  70  
SRG  H32A  H32A  H  0  0  N  N  N  26.533  -160.897  54.217   3.143   3.471  -1.537  H32A  SRG  71  
SRG  H33   H33   H  0  1  N  N  N  23.775  -160.734  55.578   2.245   1.378   0.538  H33   SRG  72  
SRG  H34   H34   H  0  1  N  N  N  25.179  -162.985  54.108   2.330   1.446  -2.495  H34   SRG  73  
SRG  HO35  HO35  H  0  0  N  N  N  21.472  -157.584  48.795  -9.365   0.134  -0.290  HO35  SRG  74  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
SRG  C8   N7    SING  N  N   1  
SRG  C8   O9    DOUB  N  N   2  
SRG  C8   N36   SING  N  N   3  
SRG  C6   C4    SING  N  N   4  
SRG  C5   C4    SING  N  N   5  
SRG  C4   C3    SING  N  N   6  
SRG  O2   C1    DOUB  N  N   7  
SRG  C1   C3    SING  N  N   8  
SRG  C1   O35   SING  N  N   9  
SRG  C3   N7    SING  N  N  10  
SRG  N36  C11   SING  N  N  11  
SRG  C11  C12   SING  N  N  12  
SRG  C11  C15   SING  N  N  13  
SRG  C12  C13   SING  N  N  14  
SRG  C12  C14   SING  N  N  15  
SRG  C15  O16   DOUB  N  N  16  
SRG  C15  N17   SING  N  N  17  
SRG  N17  C18   SING  N  N  18  
SRG  C18  C19   SING  N  N  19  
SRG  C18  C34   SING  N  N  20  
SRG  C19  O20   DOUB  N  N  21  
SRG  C19  N21   SING  N  N  22  
SRG  N21  C22   SING  N  N  23  
SRG  C22  C23   SING  N  N  24  
SRG  C22  C26   SING  N  N  25  
SRG  C23  C24   SING  N  N  26  
SRG  C23  C25   SING  N  N  27  
SRG  C26  C27   DOUB  N  N  28  
SRG  C27  C28   SING  N  N  29  
SRG  C28  O29   DOUB  N  N  30  
SRG  C28  N30   SING  N  N  31  
SRG  N30  C31   SING  N  N  32  
SRG  C31  C32   SING  N  N  33  
SRG  C32  C33   SING  N  N  34  
SRG  C33  C34   DOUB  N  N  35  
SRG  C6   H6    SING  N  N  36  
SRG  C6   H6A   SING  N  N  37  
SRG  C6   H6B   SING  N  N  38  
SRG  C5   H5    SING  N  N  39  
SRG  C5   H5A   SING  N  N  40  
SRG  C5   H5B   SING  N  N  41  
SRG  C4   H4    SING  N  N  42  
SRG  C3   H3    SING  N  N  43  
SRG  N7   HN7   SING  N  N  44  
SRG  N36  HN36  SING  N  N  45  
SRG  C11  H11   SING  N  N  46  
SRG  C12  H12   SING  N  N  47  
SRG  C13  H13   SING  N  N  48  
SRG  C13  H13A  SING  N  N  49  
SRG  C13  H13B  SING  N  N  50  
SRG  C14  H14   SING  N  N  51  
SRG  C14  H14A  SING  N  N  52  
SRG  C14  H14B  SING  N  N  53  
SRG  N17  HN17  SING  N  N  54  
SRG  C18  H18   SING  N  N  55  
SRG  N21  HN21  SING  N  N  56  
SRG  C22  H22   SING  N  E  57  
SRG  C23  H23   SING  N  N  58  
SRG  C24  H24   SING  N  N  59  
SRG  C24  H24A  SING  N  N  60  
SRG  C24  H24B  SING  N  N  61  
SRG  C25  H25   SING  N  N  62  
SRG  C25  H25A  SING  N  N  63  
SRG  C25  H25B  SING  N  N  64  
SRG  C26  H26   SING  N  N  65  
SRG  C27  H27   SING  N  N  66  
SRG  N30  HN30  SING  N  N  67  
SRG  C31  H31   SING  N  N  68  
SRG  C31  H31A  SING  N  N  69  
SRG  C32  H32   SING  N  N  70  
SRG  C32  H32A  SING  N  E  71  
SRG  C33  H33   SING  N  N  72  
SRG  C34  H34   SING  N  N  73  
SRG  O35  HO35  SING  N  N  74  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
SRG  SMILES            ACDLabs               10.04  "O=C(O)C(NC(=O)NC(C(=O)NC1C(=O)NC(C=CC(=O)NCCC=C1)C(C)C)C(C)C)C(C)C"  
SRG  SMILES_CANONICAL  CACTVS                3.341  "CC(C)[C@@H]\1NC(=O)[C@@H](NC(=O)[C@@H](NC(=O)N[C@@H](C(C)C)C(O)=O)C(C)C)/C=C/CCNC(=O)/C=C\1"  
SRG  SMILES            CACTVS                3.341  "CC(C)[CH]1NC(=O)[CH](NC(=O)[CH](NC(=O)N[CH](C(C)C)C(O)=O)C(C)C)C=CCCNC(=O)C=C1"  
SRG  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "CC(C)[C@H]1C=CC(=O)NCC\C=C\[C@@H](C(=O)N1)NC(=O)[C@H](C(C)C)NC(=O)N[C@@H](C(C)C)C(=O)O"  
SRG  SMILES            "OpenEye OEToolkits"  1.5.0  "CC(C)C1C=CC(=O)NCCC=CC(C(=O)N1)NC(=O)C(C(C)C)NC(=O)NC(C(C)C)C(=O)O"  
SRG  InChI             InChI                 1.03   "InChI=1S/C24H39N5O6/c1-13(2)16-10-11-18(30)25-12-8-7-9-17(21(31)26-16)27-22(32)19(14(3)4)28-24(35)29-20(15(5)6)23(33)34/h7,9-11,13-17,19-20H,8,12H2,1-6H3,(H,25,30)(H,26,31)(H,27,32)(H,33,34)(H2,28,29,35)/b9-7+,11-10?/t16-,17+,19+,20+/m1/s1"  
SRG  InChIKey          InChI                 1.03   RUWSLQOIGKYPEZ-XQGFKOBESA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
SRG  "SYSTEMATIC NAME"  ACDLabs               10.04  "N-{[(1S)-2-methyl-1-{[(3E,5S,8S,9E)-5-(1-methylethyl)-2,7-dioxo-1,6-diazacyclododeca-3,9-dien-8-yl]carbamoyl}propyl]carbamoyl}-L-valine"  
SRG  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "(2S)-2-[[(2S)-1-[[(5S,8S,9E)-2,7-dioxo-5-propan-2-yl-1,6-diazacyclododeca-3,9-dien-8-yl]amino]-3-methyl-1-oxo-butan-2-yl]carbamoylamino]-3-methyl-butanoic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
SRG  "Create component"   2007-11-20  PDBJ  
SRG  "Modify descriptor"  2011-06-04  RCSB  
SRG  "Modify synonyms"    2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     SRG
_pdbx_chem_comp_synonyms.name        "Syringolin A"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
