data_V0I
# 
_chem_comp.id                                    V0I 
_chem_comp.name                                  "8-[3-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl-methyl-amino]prop-1-ynyl]-6-azanyl-9-[(2~{R},3~{R},4~{S},5~{R})-5-[(dimethylsulfamoylamino)methyl]-3,4-bis(oxidanyl)oxolan-2-yl]purine" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C26 H35 N13 O8 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-09-07 
_chem_comp.pdbx_modified_date                    2025-03-14 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        689.703 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     V0I 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8QGM 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
V0I N   N1  N 0 1 N N N N N N 14.052 -9.468  -12.031 -1.978 -1.858 -2.436 N   V0I 1  
V0I C   C1  C 0 1 N N N N N N 12.739 -8.962  -12.523 -1.000 -1.299 -3.378 C   V0I 2  
V0I O   O1  O 0 1 N N N N N N 15.836 -8.339  -9.922  -4.196 -0.823 -0.926 O   V0I 3  
V0I C1  C2  C 0 1 N N N N N N 14.041 -9.800  -10.605 -3.339 -1.788 -2.985 C1  V0I 4  
V0I C10 C3  C 0 1 Y N N N N N 18.665 -4.009  -7.482  -6.818 3.469  2.132  C10 V0I 5  
V0I C11 C4  C 0 1 N N N N N N 14.524 -10.569 -12.887 -1.628 -3.237 -2.071 C11 V0I 6  
V0I C12 C5  C 0 1 N N N N N N 15.971 -10.835 -12.843 -0.405 -3.233 -1.252 C12 V0I 7  
V0I C13 C6  C 0 1 N N N N N N 17.160 -10.961 -12.892 0.570  -3.230 -0.598 C13 V0I 8  
V0I C14 C7  C 0 1 Y N N N N N 18.536 -11.272 -12.831 1.760  -3.225 0.199  C14 V0I 9  
V0I C15 C8  C 0 1 Y N N N N N 20.388 -12.198 -12.333 3.440  -3.922 1.390  C15 V0I 10 
V0I C16 C9  C 0 1 Y N N N N N 20.726 -11.066 -13.050 3.534  -2.521 1.316  C16 V0I 11 
V0I C17 C10 C 0 1 N N R N N N 19.443 -9.217  -14.091 2.142  -0.721 0.204  C17 V0I 12 
V0I C18 C11 C 0 1 N N R N N N 18.326 -7.203  -13.976 3.021  1.383  -0.065 C18 V0I 13 
V0I C19 C12 C 0 1 N N S N N N 18.368 -7.673  -15.432 2.240  1.469  1.266  C19 V0I 14 
V0I C2  C13 C 0 1 N N R N N N 15.402 -9.711  -9.943  -4.355 -1.915 -1.848 C2  V0I 15 
V0I C20 C14 C 0 1 N N R N N N 18.509 -9.180  -15.286 1.649  0.053  1.446  C20 V0I 16 
V0I C21 C15 C 0 1 N N N N N N 16.969 -7.231  -13.308 4.307  2.207  0.018  C21 V0I 17 
V0I C22 C16 C 0 1 N N N N N N 13.622 -5.020  -13.266 8.522  2.158  -0.925 C22 V0I 18 
V0I C23 C17 C 0 1 N N N N N N 14.013 -5.200  -10.826 7.374  3.637  0.788  C23 V0I 19 
V0I C24 C18 C 0 1 Y N N N N N 22.882 -11.468 -12.841 5.439  -2.598 2.601  C24 V0I 20 
V0I C25 C19 C 0 1 Y N N N N N 21.442 -12.979 -11.842 4.425  -4.615 2.119  C25 V0I 21 
V0I C3  C20 C 0 1 N N R N N N 16.885 -8.274  -8.961  -5.510 -0.500 -0.425 C3  V0I 22 
V0I C4  C21 C 0 1 N N R N N N 16.652 -9.384  -7.930  -6.416 -0.625 -1.676 C4  V0I 23 
V0I C5  C22 C 0 1 N N S N N N 15.398 -10.093 -8.463  -5.786 -1.832 -2.412 C5  V0I 24 
V0I C6  C23 C 0 1 Y N N N N N 15.972 -6.262  -7.706  -4.700 1.884  -0.248 C6  V0I 25 
V0I C7  C24 C 0 1 Y N N N N N 17.680 -5.000  -7.660  -6.069 2.709  1.218  C7  V0I 26 
V0I C8  C25 C 0 1 Y N N N N N 18.051 -6.125  -8.377  -6.421 1.362  1.029  C8  V0I 27 
V0I C9  C26 C 0 1 Y N N N N N 20.092 -5.365  -8.697  -8.115 1.608  2.562  C9  V0I 28 
V0I N1  N2  N 0 1 Y N N N N N 16.947 -6.940  -8.396  -5.541 0.868  0.099  N1  V0I 29 
V0I N10 N3  N 0 1 Y N N N N N 21.963 -10.642 -13.348 4.540  -1.908 1.931  N10 V0I 30 
V0I N11 N4  N 0 1 Y N N N N N 22.699 -12.582 -12.126 5.393  -3.914 2.700  N11 V0I 31 
V0I N12 N5  N 0 1 N N N N N N 21.260 -14.064 -11.087 4.386  -5.994 2.227  N12 V0I 32 
V0I N2  N6  N 0 1 Y N N N N N 16.359 -5.099  -7.237  -5.012 2.963  0.409  N2  V0I 33 
V0I N3  N7  N 0 1 Y N N N N N 19.254 -6.376  -8.919  -7.441 0.859  1.715  N3  V0I 34 
V0I N4  N8  N 0 1 Y N N N N N 19.878 -4.231  -8.023  -7.822 2.878  2.773  N4  V0I 35 
V0I N5  N9  N 0 1 N N N N N N 18.457 -2.849  -6.847  -6.515 4.799  2.365  N5  V0I 36 
V0I N6  N10 N 0 1 Y N N N N N 19.008 -12.325 -12.218 2.345  -4.292 0.691  N6  V0I 37 
V0I N7  N11 N 0 1 Y N N N N N 19.535 -10.464 -13.370 2.467  -2.105 0.560  N7  V0I 38 
V0I N8  N12 N 0 1 N N N N N N 16.281 -5.969  -13.579 4.978  2.197  -1.284 N8  V0I 39 
V0I N9  N13 N 0 1 N N N N N N 14.589 -5.006  -12.162 7.403  3.021  -0.541 N9  V0I 40 
V0I O1  O2  O 0 1 N N N N N N 15.504 -11.493 -8.276  -6.509 -3.030 -2.119 O1  V0I 41 
V0I O2  O3  O 0 1 N N N N N N 17.819 -10.210 -7.919  -7.767 -0.904 -1.302 O2  V0I 42 
V0I O3  O4  O 0 1 N N N N N N 19.003 -8.209  -13.210 3.331  -0.019 -0.221 O3  V0I 43 
V0I O4  O5  O 0 1 N N N N N N 19.117 -9.764  -16.442 0.221  0.106  1.469  O4  V0I 44 
V0I O5  O6  O 0 1 N N N N N N 19.541 -7.191  -16.070 1.198  2.441  1.173  O5  V0I 45 
V0I O6  O7  O 0 1 N N N N N N 16.487 -3.635  -13.155 6.674  2.977  -2.899 O6  V0I 46 
V0I O7  O8  O 0 1 N N N N N N 16.862 -5.148  -11.233 5.635  4.576  -1.282 O7  V0I 47 
V0I S   S1  S 0 1 N N N N N N 16.173 -4.832  -12.442 6.169  3.300  -1.610 S   V0I 48 
V0I H9  H2  H 0 1 N N N N N N 12.813 -8.732  -13.596 -1.038 -1.856 -4.314 H9  V0I 49 
V0I H10 H3  H 0 1 N N N N N N 11.968 -9.730  -12.365 -1.238 -0.252 -3.569 H10 V0I 50 
V0I H8  H4  H 0 1 N N N N N N 12.467 -8.051  -11.970 -0.000 -1.373 -2.951 H8  V0I 51 
V0I H12 H5  H 0 1 N N N N N N 13.360 -9.104  -10.093 -3.477 -0.833 -3.491 H12 V0I 52 
V0I H11 H6  H 0 1 N N N N N N 13.667 -10.828 -10.492 -3.486 -2.601 -3.696 H11 V0I 53 
V0I H20 H7  H 0 1 N N N N N N 14.002 -11.486 -12.577 -2.445 -3.681 -1.502 H20 V0I 54 
V0I H19 H8  H 0 1 N N N N N N 14.256 -10.328 -13.926 -1.457 -3.820 -2.976 H19 V0I 55 
V0I H4  H9  H 0 1 N N N N N N 20.448 -8.954  -14.453 1.387  -0.698 -0.582 H4  V0I 56 
V0I H5  H10 H 0 1 N N N N N N 18.796 -6.214  -13.872 2.401  1.730  -0.891 H5  V0I 57 
V0I H6  H11 H 0 1 N N N N N N 17.445 -7.404  -15.966 2.913  1.709  2.089  H6  V0I 58 
V0I H   H12 H 0 1 N N N N N N 16.122 -10.342 -10.485 -4.213 -2.862 -1.328 H   V0I 59 
V0I H7  H13 H 0 1 N N N N N N 17.541 -9.644  -15.044 2.030  -0.407 2.358  H7  V0I 60 
V0I H23 H14 H 0 1 N N N N N N 16.377 -8.067  -13.709 4.064  3.233  0.294  H23 V0I 61 
V0I H24 H15 H 0 1 N N N N N N 17.094 -7.357  -12.223 4.967  1.775  0.771  H24 V0I 62 
V0I H28 H16 H 0 1 N N N N N N 12.606 -5.148  -12.863 9.231  2.093  -0.098 H28 V0I 63 
V0I H26 H17 H 0 1 N N N N N N 13.681 -4.070  -13.817 8.149  1.162  -1.162 H26 V0I 64 
V0I H27 H18 H 0 1 N N N N N N 13.854 -5.853  -13.946 9.021  2.576  -1.799 H27 V0I 65 
V0I H31 H19 H 0 1 N N N N N N 12.920 -5.291  -10.907 7.792  4.642  0.731  H31 V0I 66 
V0I H30 H20 H 0 1 N N N N N N 14.425 -6.117  -10.379 6.344  3.691  1.141  H30 V0I 67 
V0I H29 H21 H 0 1 N N N N N N 14.263 -4.338  -10.190 7.965  3.036  1.479  H29 V0I 68 
V0I H32 H22 H 0 1 N N N N N N 23.910 -11.200 -13.035 6.243  -2.068 3.088  H32 V0I 69 
V0I H1  H23 H 0 1 N N N N N N 17.841 -8.485  -9.463  -5.814 -1.212 0.342  H1  V0I 70 
V0I H2  H24 H 0 1 N N N N N N 16.451 -8.948  -6.940  -6.361 0.275  -2.288 H2  V0I 71 
V0I H3  H25 H 0 1 N N N N N N 14.502 -9.686  -7.973  -5.762 -1.654 -3.487 H3  V0I 72 
V0I H15 H26 H 0 1 N N N N N N 14.975 -6.652  -7.562  -3.895 1.804  -0.963 H15 V0I 73 
V0I H16 H27 H 0 1 N N N N N N 21.080 -5.477  -9.119  -8.939 1.168  3.104  H16 V0I 74 
V0I H34 H28 H 0 1 N N N N N N 22.148 -14.444 -10.829 3.674  -6.494 1.799  H34 V0I 75 
V0I H33 H29 H 0 1 N N N N N N 20.752 -13.815 -10.263 5.071  -6.460 2.732  H33 V0I 76 
V0I H18 H30 H 0 1 N N N N N N 19.290 -2.297  -6.878  -7.037 5.311  3.001  H18 V0I 77 
V0I H17 H31 H 0 1 N N N N N N 17.712 -2.353  -7.294  -5.780 5.218  1.891  H17 V0I 78 
V0I H25 H32 H 0 1 N N N N N N 16.748 -5.551  -14.358 4.725  1.544  -1.955 H25 V0I 79 
V0I H13 H33 H 0 1 N N N N N N 14.722 -11.918 -8.610  -7.434 -3.010 -2.401 H13 V0I 80 
V0I H14 H34 H 0 1 N N N N N N 17.706 -10.911 -7.287  -8.372 -0.991 -2.051 H14 V0I 81 
V0I H21 H35 H 0 1 N N N N N N 19.191 -10.703 -16.321 -0.143 0.580  2.229  H21 V0I 82 
V0I H22 H36 H 0 1 N N N N N N 19.556 -7.489  -16.972 0.675  2.537  1.981  H22 V0I 83 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
V0I C   N   SING N N 1  
V0I C1  N   SING N N 2  
V0I C2  C1  SING N N 3  
V0I C2  O   SING N N 4  
V0I O   C3  SING N N 5  
V0I C3  C4  SING N N 6  
V0I C4  C5  SING N N 7  
V0I C5  C2  SING N N 8  
V0I O1  C5  SING N N 9  
V0I O2  C4  SING N N 10 
V0I N1  C3  SING N N 11 
V0I N1  C6  SING Y N 12 
V0I C6  N2  DOUB Y N 13 
V0I N2  C7  SING Y N 14 
V0I C7  C8  DOUB Y N 15 
V0I C8  N1  SING Y N 16 
V0I N3  C8  SING Y N 17 
V0I C9  N3  DOUB Y N 18 
V0I N4  C9  SING Y N 19 
V0I C10 N4  DOUB Y N 20 
V0I C7  C10 SING Y N 21 
V0I N5  C10 SING N N 22 
V0I N   C11 SING N N 23 
V0I C11 C12 SING N N 24 
V0I C12 C13 TRIP N N 25 
V0I C13 C14 SING N N 26 
V0I C14 N6  DOUB Y N 27 
V0I N6  C15 SING Y N 28 
V0I C15 C16 DOUB Y N 29 
V0I C16 N7  SING Y N 30 
V0I C14 N7  SING Y N 31 
V0I N7  C17 SING N N 32 
V0I C17 O3  SING N N 33 
V0I O3  C18 SING N N 34 
V0I C19 C18 SING N N 35 
V0I C20 C19 SING N N 36 
V0I C17 C20 SING N N 37 
V0I O4  C20 SING N N 38 
V0I O5  C19 SING N N 39 
V0I C18 C21 SING N N 40 
V0I C21 N8  SING N N 41 
V0I N8  S   SING N N 42 
V0I O6  S   DOUB N N 43 
V0I S   O7  DOUB N N 44 
V0I N9  S   SING N N 45 
V0I C22 N9  SING N N 46 
V0I C23 N9  SING N N 47 
V0I N10 C16 SING Y N 48 
V0I C24 N10 DOUB Y N 49 
V0I N11 C24 SING Y N 50 
V0I C25 N11 DOUB Y N 51 
V0I C15 C25 SING Y N 52 
V0I N12 C25 SING N N 53 
V0I C   H9  SING N N 54 
V0I C   H10 SING N N 55 
V0I C   H8  SING N N 56 
V0I C1  H12 SING N N 57 
V0I C1  H11 SING N N 58 
V0I C11 H20 SING N N 59 
V0I C11 H19 SING N N 60 
V0I C17 H4  SING N N 61 
V0I C18 H5  SING N N 62 
V0I C19 H6  SING N N 63 
V0I C2  H   SING N N 64 
V0I C20 H7  SING N N 65 
V0I C21 H23 SING N N 66 
V0I C21 H24 SING N N 67 
V0I C22 H28 SING N N 68 
V0I C22 H26 SING N N 69 
V0I C22 H27 SING N N 70 
V0I C23 H31 SING N N 71 
V0I C23 H30 SING N N 72 
V0I C23 H29 SING N N 73 
V0I C24 H32 SING N N 74 
V0I C3  H1  SING N N 75 
V0I C4  H2  SING N N 76 
V0I C5  H3  SING N N 77 
V0I C6  H15 SING N N 78 
V0I C9  H16 SING N N 79 
V0I N12 H34 SING N N 80 
V0I N12 H33 SING N N 81 
V0I N5  H18 SING N N 82 
V0I N5  H17 SING N N 83 
V0I N8  H25 SING N N 84 
V0I O1  H13 SING N N 85 
V0I O2  H14 SING N N 86 
V0I O4  H21 SING N N 87 
V0I O5  H22 SING N N 88 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
V0I InChI            InChI                1.06  "InChI=1S/C26H35N13O8S/c1-36(2)48(44,45)34-7-12-17(40)20(43)26(46-12)39-14(35-16-22(28)30-10-32-24(16)39)5-4-6-37(3)8-13-18(41)19(42)25(47-13)38-11-33-15-21(27)29-9-31-23(15)38/h9-13,17-20,25-26,34,40-43H,6-8H2,1-3H3,(H2,27,29,31)(H2,28,30,32)/t12-,13+,17-,18-,19-,20-,25+,26+/m1/s1" 
V0I InChIKey         InChI                1.06  LGNKFLUWHXMZRD-YPYLWAKUSA-N                                                                                                                                                                                                                                                                 
V0I SMILES_CANONICAL CACTVS               3.385 "CN(C)[S](=O)(=O)NC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2c(nc3c(N)ncnc23)C#CCN(C)C[C@H]4O[C@H]([C@H](O)[C@@H]4O)n5cnc6c(N)ncnc56"                                                                                                                                                                 
V0I SMILES           CACTVS               3.385 "CN(C)[S](=O)(=O)NC[CH]1O[CH]([CH](O)[CH]1O)n2c(nc3c(N)ncnc23)C#CCN(C)C[CH]4O[CH]([CH](O)[CH]4O)n5cnc6c(N)ncnc56"                                                                                                                                                                           
V0I SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN(C)S(=O)(=O)NC[C@@H]1[C@H]([C@H]([C@@H](O1)n2c(nc3c2ncnc3N)C#CCN(C)C[C@@H]4[C@H]([C@H]([C@@H](O4)n5cnc6c5ncnc6N)O)O)O)O"                                                                                                                                                                 
V0I SMILES           "OpenEye OEToolkits" 2.0.7 "CN(C)S(=O)(=O)NCC1C(C(C(O1)n2c(nc3c2ncnc3N)C#CCN(C)CC4C(C(C(O4)n5cnc6c5ncnc6N)O)O)O)O"                                                                                                                                                                                                     
# 
_pdbx_chem_comp_identifier.comp_id           V0I 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "8-[3-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl-methyl-amino]prop-1-ynyl]-6-azanyl-9-[(2~{R},3~{R},4~{S},5~{R})-5-[(dimethylsulfamoylamino)methyl]-3,4-bis(oxidanyl)oxolan-2-yl]purine" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
V0I "Create component" 2023-09-07 PDBE 
V0I "Initial release"  2025-03-19 RCSB 
# 
