data_YVI
# 
_chem_comp.id                                    YVI 
_chem_comp.name                                  "6-THIOOCTANOIC ACID" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C8 H16 O2 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "6-sulfanyloctanoic acid" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2024-01-22 
_chem_comp.pdbx_modified_date                    2025-07-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        176.276 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     YVI 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        ? 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
YVI C8  C8  C 0 1 N N N N N N 3.836  -0.937 -0.520 4.812  0.734  0.460  C8  YVI 1  
YVI C7  C7  C 0 1 N N N N N N 2.424  -0.883 0.035  3.476  1.186  -0.133 C7  YVI 2  
YVI C6  C6  C 0 1 N N S N N N 1.859  0.510  0.240  2.367  0.238  0.327  C6  YVI 3  
YVI S6  S6  S 0 1 N N N N N N 2.763  1.427  1.524  2.661  -1.415 -0.359 S6  YVI 4  
YVI C5  C5  C 0 1 N N N N N N 0.359  0.508  0.494  1.014  0.760  -0.162 C5  YVI 5  
YVI C4  C4  C 0 1 N N N N N N -0.548 0.375  -0.732 -0.105 -0.118 0.403  C4  YVI 6  
YVI C3  C3  C 0 1 N N N N N N -1.928 -0.232 -0.497 -1.457 0.404  -0.087 C3  YVI 7  
YVI C2  C2  C 0 1 N N N N N N -2.799 0.618  0.408  -2.577 -0.474 0.478  C2  YVI 8  
YVI C1  C1  C 0 1 N N N N N N -4.256 0.244  0.401  -3.909 0.040  -0.004 C1  YVI 9  
YVI OT  OT  O 0 1 N Y N N N N -4.480 -0.972 0.828  -5.041 -0.578 0.367  OT  YVI 10 
YVI O1  O1  O 0 1 N N N N N N -5.144 0.992  0.036  -3.958 1.009  -0.725 O1  YVI 11 
YVI H8  H8  H 0 1 N N N N N N 4.148  -1.986 -0.630 5.602  1.409  0.131  H8  YVI 12 
YVI H8A H8A H 0 1 N N N N N N 3.863  -0.442 -1.502 4.750  0.748  1.548  H8A YVI 13 
YVI H8B H8B H 0 1 N N N N N N 4.521  -0.421 0.169  5.036  -0.278 0.122  H8B YVI 14 
YVI H7A H7A H 0 1 N N N N N N 1.764  -1.418 -0.664 3.253  2.198  0.205  H7A YVI 15 
YVI H7  H7  H 0 1 N N N N N N 2.422  -1.397 1.008  3.538  1.172  -1.221 H7  YVI 16 
YVI H6  H6  H 0 1 N N N N N N 2.037  1.079  -0.684 2.364  0.184  1.416  H6  YVI 17 
YVI H6A H6A H 0 1 N N N N N N 2.133  2.564  1.539  2.639  -1.200 -1.686 H6A YVI 18 
YVI H5A H5A H 0 1 N N N N N N 0.136  -0.334 1.166  0.877  1.786  0.177  H5A YVI 19 
YVI H5  H5  H 0 1 N N N N N N 0.105  1.454  0.995  0.986  0.730  -1.251 H5  YVI 20 
YVI H4A H4A H 0 1 N N N N N N -0.693 1.382  -1.151 0.032  -1.145 0.064  H4A YVI 21 
YVI H4  H4  H 0 1 N N N N N N -0.026 -0.256 -1.466 -0.076 -0.088 1.492  H4  YVI 22 
YVI H3A H3A H 0 1 N N N N N N -2.433 -0.342 -1.468 -1.595 1.431  0.252  H3A YVI 23 
YVI H3  H3  H 0 1 N N N N N N -1.802 -1.222 -0.034 -1.486 0.374  -1.176 H3  YVI 24 
YVI H2A H2A H 0 1 N N N N N N -2.424 0.520  1.437  -2.439 -1.500 0.139  H2A YVI 25 
YVI H2  H2  H 0 1 N N N N N N -2.711 1.666  0.084  -2.548 -0.443 1.567  H2  YVI 26 
YVI HT  HT  H 0 1 N Y N N N N -5.413 -1.151 0.801  -5.871 -0.212 0.033  HT  YVI 27 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
YVI C8 C7  SING N N 1  
YVI C7 C6  SING N N 2  
YVI C6 S6  SING N N 3  
YVI C6 C5  SING N N 4  
YVI C5 C4  SING N N 5  
YVI C4 C3  SING N N 6  
YVI C3 C2  SING N N 7  
YVI C2 C1  SING N N 8  
YVI C1 OT  SING N N 9  
YVI C1 O1  DOUB N N 10 
YVI C8 H8  SING N N 11 
YVI C8 H8A SING N N 12 
YVI C8 H8B SING N N 13 
YVI C7 H7A SING N N 14 
YVI C7 H7  SING N N 15 
YVI C6 H6  SING N N 16 
YVI S6 H6A SING N N 17 
YVI C5 H5A SING N N 18 
YVI C5 H5  SING N N 19 
YVI C4 H4A SING N N 20 
YVI C4 H4  SING N N 21 
YVI C3 H3A SING N N 22 
YVI C3 H3  SING N N 23 
YVI C2 H2A SING N N 24 
YVI C2 H2  SING N N 25 
YVI OT HT  SING N N 26 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
YVI SMILES           ACDLabs              12.01 "OC(=O)CCCCC(S)CC"                                                               
YVI InChI            InChI                1.06  "InChI=1S/C8H16O2S/c1-2-7(11)5-3-4-6-8(9)10/h7,11H,2-6H2,1H3,(H,9,10)/t7-/m0/s1" 
YVI InChIKey         InChI                1.06  LABZAONVGARYLS-ZETCQYMHSA-N                                                      
YVI SMILES_CANONICAL CACTVS               3.385 "CC[C@H](S)CCCCC(O)=O"                                                           
YVI SMILES           CACTVS               3.385 "CC[CH](S)CCCCC(O)=O"                                                            
YVI SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC[C@@H](CCCCC(=O)O)S"                                                          
YVI SMILES           "OpenEye OEToolkits" 2.0.7 "CCC(CCCCC(=O)O)S"                                                               
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
YVI "SYSTEMATIC NAME" ACDLabs              12.01 "(6S)-6-sulfanyloctanoic acid"    
YVI "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(6~{S})-6-sulfanyloctanoic acid" 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      YVI 
_pdbx_chem_comp_synonyms.name         "6-sulfanyloctanoic acid" 
_pdbx_chem_comp_synonyms.provenance   PDB 
_pdbx_chem_comp_synonyms.type         ? 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
YVI "Create component"   2024-02-14 PDBE 
YVI "Modify descriptor"  2024-02-14 PDBE 
YVI "Other modification" 2024-02-14 PDBE 
YVI "Modify atom id"     2024-06-28 RCSB 
YVI "Modify PCM"         2024-09-27 PDBE 
YVI "Initial release"    2025-07-09 RCSB 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            YVI 
_pdbx_chem_comp_pcm.modified_residue_id                LYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           Lipid/lipid-like 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C1 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   NZ 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
