data_CCJ
# 
_chem_comp.id                                    CCJ 
_chem_comp.name                                  "Carboxymthylated D- Cysteine" 
_chem_comp.type                                  "D-peptide linking" 
_chem_comp.pdbx_type                             ATOMP 
_chem_comp.formula                               "C5 H9 N O4 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2017-06-01 
_chem_comp.pdbx_modified_date                    2025-03-14 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        179.194 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     CCJ 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5O4Y 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
CCJ N   N   N 0 1 N N N Y Y N -19.521 17.740 15.328 -1.946 1.743  -0.262 N   CCJ 1  
CCJ CA  CA  C 0 1 N N S Y N N -20.765 17.106 15.649 -1.937 0.407  0.349  CA  CCJ 2  
CCJ CB  CB  C 0 1 N N N N N N -21.573 17.554 16.837 -0.757 -0.397 -0.200 CB  CCJ 3  
CCJ SG  SG  S 0 1 N N N N N N -22.149 19.186 16.654 0.798  0.380  0.321  SG  CCJ 4  
CCJ CD  CD  C 0 1 N N N N N N -22.527 19.597 18.324 2.058  -0.698 -0.414 CD  CCJ 5  
CCJ CE  CE  C 0 1 N N N N N N -21.420 20.226 19.059 3.429  -0.177 -0.065 CE  CCJ 6  
CCJ OZ1 OZ1 O 0 1 N N N N N N -21.763 20.580 20.172 3.544  0.818  0.609  OZ1 CCJ 7  
CCJ C   C   C 0 1 N N N Y N Y -20.351 15.686 15.834 -3.225 -0.304 0.021  C   CCJ 8  
CCJ O   O   O 0 1 N N N Y N Y -19.572 15.243 15.015 -3.895 0.061  -0.916 O   CCJ 9  
CCJ OXT OXT O 0 1 N Y N Y N Y -20.886 14.914 16.781 -3.628 -1.343 0.769  OXT CCJ 10 
CCJ H   H   H 0 1 N N N Y Y N -19.673 18.717 15.179 -1.122 2.264  -0.003 H   CCJ 11 
CCJ H2  H1  H 0 1 N Y N Y Y N -18.878 17.615 16.084 -2.035 1.682  -1.265 H1  CCJ 12 
CCJ HA  HA  H 0 1 N N N Y N N -21.419 17.153 14.766 -1.840 0.502  1.430  HA  CCJ 13 
CCJ HB2 HB2 H 0 1 N N N N N N -22.437 16.883 16.953 -0.801 -1.416 0.184  HB2 CCJ 14 
CCJ HB3 HB3 H 0 1 N N N N N N -20.943 17.498 17.737 -0.806 -0.417 -1.289 HB3 CCJ 15 
CCJ HD3 HD3 H 0 1 N N N N N N -23.379 20.293 18.323 1.944  -1.709 -0.024 HD3 CCJ 16 
CCJ HD2 HD2 H 0 1 N N N N N N -22.809 18.673 18.851 1.939  -0.710 -1.497 HD2 CCJ 17 
CCJ HXT H6  H 0 1 N Y N Y N Y -20.560 14.027 16.689 -4.460 -1.767 0.520  H6  CCJ 18 
CCJ OZ2 OZ2 O 0 1 N Y N N N N -20.224 20.322 18.456 4.523  -0.820 -0.505 OZ2 CCJ 19 
CCJ H1  H2  H 0 1 N Y N N N N -19.605 20.737 19.044 5.380  -0.448 -0.256 H2  CCJ 20 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
CCJ O   C   DOUB N N 1  
CCJ N   CA  SING N N 2  
CCJ CA  C   SING N N 3  
CCJ CA  CB  SING N N 4  
CCJ SG  CB  SING N N 5  
CCJ SG  CD  SING N N 6  
CCJ CD  CE  SING N N 7  
CCJ CE  OZ1 DOUB N N 8  
CCJ C   OXT SING N N 9  
CCJ N   H   SING N N 10 
CCJ N   H2  SING N N 11 
CCJ CA  HA  SING N N 12 
CCJ CB  HB2 SING N N 13 
CCJ CB  HB3 SING N N 14 
CCJ CD  HD3 SING N N 15 
CCJ CD  HD2 SING N N 16 
CCJ OXT HXT SING N N 17 
CCJ CE  OZ2 SING N N 18 
CCJ OZ2 H1  SING N N 19 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
CCJ InChI            InChI                1.03  "InChI=1S/C5H9NO4S/c6-3(5(9)10)1-11-2-4(7)8/h3H,1-2,6H2,(H,7,8)(H,9,10)/t3-/m1/s1" 
CCJ InChIKey         InChI                1.03  GBFLZEXEOZUWRN-GSVOUGTGSA-N                                                        
CCJ SMILES_CANONICAL CACTVS               3.385 "N[C@H](CSCC(O)=O)C(O)=O"                                                          
CCJ SMILES           CACTVS               3.385 "N[CH](CSCC(O)=O)C(O)=O"                                                           
CCJ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "C([C@H](C(=O)O)N)SCC(=O)O"                                                        
CCJ SMILES           "OpenEye OEToolkits" 2.0.6 "C(C(C(=O)O)N)SCC(=O)O"                                                            
# 
_pdbx_chem_comp_identifier.comp_id           CCJ 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.6 
_pdbx_chem_comp_identifier.identifier        "(2~{S})-2-azanyl-3-(2-hydroxy-2-oxoethylsulfanyl)propanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
CCJ "Create component" 2017-06-01 EBI  
CCJ "Modify backbone"  2023-11-03 PDBE 
CCJ "Modify PCM"       2024-09-27 PDBE 
CCJ "Initial release"  2025-03-19 RCSB 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            CCJ 
_pdbx_chem_comp_pcm.modified_residue_id                DCY 
_pdbx_chem_comp_pcm.type                               Carboxymethylation 
_pdbx_chem_comp_pcm.category                           "Named protein modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               ? 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   ? 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
