data_A1IBK
# 
_chem_comp.id                                    A1IBK 
_chem_comp.name                                  2-azanyl-8-methyl-3,7-dihydropurine-6-thione 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C6 H7 N5 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2024-05-14 
_chem_comp.pdbx_modified_date                    2025-05-16 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        181.218 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     A1IBK 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        9F8U 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
A1IBK C4 C1 C 0 1 N N N N N N -11.789 -17.090 12.898 -1.880 -1.176 -0.002 C4 A1IBK 1  
A1IBK C5 C2 C 0 1 N N N N N N -11.006 -15.448 11.465 -0.877 0.915  0.002  C5 A1IBK 2  
A1IBK C6 C3 C 0 1 Y N N N N N -9.659  -15.805 11.793 0.402  0.311  -0.001 C6 A1IBK 3  
A1IBK N1 N1 N 0 1 Y N N N N N -8.129  -17.062 12.880 1.791  -1.389 0.002  N1 A1IBK 4  
A1IBK N2 N2 N 0 1 N N N N N N -10.529 -17.546 13.170 -0.678 -1.812 0.001  N2 A1IBK 5  
A1IBK C3 C4 C 0 1 Y N N N N N -9.459  -16.868 12.664 0.491  -1.075 0.001  C3 A1IBK 6  
A1IBK N3 N3 N 0 1 N N N N N N -12.805 -17.709 13.458 -3.029 -1.922 -0.002 N3 A1IBK 7  
A1IBK C1 C5 C 0 1 N N N N N N -6.040  -15.975 12.098 4.015  -0.249 0.002  C1 A1IBK 8  
A1IBK C2 C6 C 0 1 Y N N N N N -7.509  -16.138 12.166 2.509  -0.297 0.001  C2 A1IBK 9  
A1IBK N4 N4 N 0 1 N N N N N N -12.015 -16.023 12.103 -1.972 0.137  0.002  N4 A1IBK 10 
A1IBK S1 S1 S 0 1 N N N N N N -11.420 -14.311 10.315 -1.028 2.620  0.001  S1 A1IBK 11 
A1IBK N5 N5 N 0 1 Y N N N N N -8.399  -15.368 11.485 1.697  0.781  -0.007 N5 A1IBK 12 
A1IBK H4 H2 H 0 1 N N N N N N -10.394 -18.363 13.731 -0.641 -2.782 0.002  H4 A1IBK 13 
A1IBK H6 H3 H 0 1 N N N N N N -13.738 -17.389 13.294 -3.893 -1.482 0.001  H6 A1IBK 14 
A1IBK H5 H4 H 0 1 N N N N N N -12.645 -18.500 14.048 -2.977 -2.891 -0.004 H5 A1IBK 15 
A1IBK H3 H5 H 0 1 N N N N N N -5.557  -16.736 12.728 4.379  -0.239 -1.026 H3 A1IBK 16 
A1IBK H1 H6 H 0 1 N N N N N N -5.706  -16.095 11.057 4.350  0.653  0.514  H1 A1IBK 17 
A1IBK H2 H7 H 0 1 N N N N N N -5.765  -14.972 12.458 4.407  -1.126 0.517  H2 A1IBK 18 
A1IBK H7 H8 H 0 1 N N N N N N -8.173  -14.615 10.868 1.973  1.711  -0.009 H7 A1IBK 19 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
A1IBK C1 C2 SING N N 1  
A1IBK C2 N1 DOUB Y N 2  
A1IBK N1 C3 SING Y N 3  
A1IBK C3 N2 SING N N 4  
A1IBK N2 C4 SING N N 5  
A1IBK C4 N3 SING N N 6  
A1IBK C4 N4 DOUB N N 7  
A1IBK N4 C5 SING N N 8  
A1IBK C5 S1 DOUB N N 9  
A1IBK C5 C6 SING N N 10 
A1IBK C6 N5 SING Y N 11 
A1IBK C2 N5 SING Y N 12 
A1IBK C3 C6 DOUB Y N 13 
A1IBK N2 H4 SING N N 14 
A1IBK N3 H6 SING N N 15 
A1IBK N3 H5 SING N N 16 
A1IBK C1 H3 SING N N 17 
A1IBK C1 H1 SING N N 18 
A1IBK C1 H2 SING N N 19 
A1IBK N5 H7 SING N N 20 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
A1IBK InChI            InChI                1.06  "InChI=1S/C6H7N5S/c1-2-8-3-4(9-2)10-6(7)11-5(3)12/h1H3,(H4,7,8,9,10,11,12)" 
A1IBK InChIKey         InChI                1.06  VFPBXHBKDUKYRE-UHFFFAOYSA-N                                                 
A1IBK SMILES_CANONICAL CACTVS               3.385 "Cc1[nH]c2C(=S)N=C(N)Nc2n1"                                                 
A1IBK SMILES           CACTVS               3.385 "Cc1[nH]c2C(=S)N=C(N)Nc2n1"                                                 
A1IBK SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1[nH]c2c(n1)NC(=NC2=S)N"                                                 
A1IBK SMILES           "OpenEye OEToolkits" 2.0.7 "Cc1[nH]c2c(n1)NC(=NC2=S)N"                                                 
# 
_pdbx_chem_comp_identifier.comp_id           A1IBK 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        2-azanyl-8-methyl-3,7-dihydropurine-6-thione 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
A1IBK "Create component" 2024-05-14 PDBE 
A1IBK "Initial release"  2025-05-21 RCSB 
# 
