data_YGK
# 
_chem_comp.id                                    YGK 
_chem_comp.name                                  "Monoepoxidized farnesyl acetate" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C17 H28 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "[(2~{E},6~{E})-9-[(2~{R})-3,3-dimethyloxiran-2-yl]-3,7-dimethyl-nona-2,6-dienyl] ethanoate" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-12-04 
_chem_comp.pdbx_modified_date                    2025-04-11 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        280.402 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     YGK 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8XA5 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
YGK C10 C1  C 0 1 N N N N N N 29.983 4.083  55.856 1.648  -0.284 1.348  C10 YGK 1  
YGK C11 C2  C 0 1 N N N N N N 28.843 3.554  56.687 3.145  -0.370 1.501  C11 YGK 2  
YGK C12 C3  C 0 1 N N N N N N 27.931 4.661  57.202 3.818  0.195  0.249  C12 YGK 3  
YGK C13 C4  C 0 1 N N R N N N 27.690 4.522  58.695 5.338  0.108  0.403  C13 YGK 4  
YGK C14 C5  C 0 1 N N N N N N 28.671 4.851  59.694 6.203  0.676  -0.723 C14 YGK 5  
YGK C15 C6  C 0 1 N N N N N N 28.132 5.317  61.028 7.539  1.317  -0.342 C15 YGK 6  
YGK C17 C7  C 0 1 N N N N N N 32.448 3.627  52.881 -3.313 -2.684 -0.322 C17 YGK 7  
YGK C18 C8  C 0 1 N N N N N N 29.565 4.528  54.488 0.927  0.991  1.704  C18 YGK 8  
YGK C01 C9  C 0 1 N N N N N N 36.384 -0.236 50.996 -6.817 2.470  0.640  C01 YGK 9  
YGK C02 C10 C 0 1 N N N N N N 35.724 -0.398 52.352 -6.337 1.211  -0.034 C02 YGK 10 
YGK C04 C11 C 0 1 N N N N N N 33.876 1.076  52.178 -4.632 -0.246 -0.840 C04 YGK 11 
YGK C05 C12 C 0 1 N N N N N N 33.943 1.734  53.534 -3.129 -0.323 -0.914 C05 YGK 12 
YGK C06 C13 C 0 1 N N N N N N 33.310 2.871  53.864 -2.514 -1.441 -0.619 C06 YGK 13 
YGK C07 C14 C 0 1 N N N N N N 33.436 3.463  55.259 -1.008 -1.485 -0.578 C07 YGK 14 
YGK C08 C15 C 0 1 N N N N N N 32.447 4.604  55.550 -0.531 -1.270 0.860  C08 YGK 15 
YGK C09 C16 C 0 1 N N N N N N 31.246 4.108  56.313 0.974  -1.315 0.901  C09 YGK 16 
YGK C19 C17 C 0 1 N N N N N N 30.156 5.072  59.470 5.490  1.295  -1.927 C19 YGK 17 
YGK O03 O1  O 0 1 N N N N N N 34.377 -0.245 52.223 -5.022 0.988  -0.181 O03 YGK 18 
YGK O16 O2  O 0 1 N N N N N N 36.313 -0.619 53.385 -7.137 0.401  -0.441 O16 YGK 19 
YGK O20 O3  O 0 1 N N N N N N 28.228 3.362  59.281 6.053  -0.729 -0.508 O20 YGK 20 
YGK H1  H1  H 0 1 N N N N N N 28.247 2.865  56.070 3.455  0.206  2.372  H1  YGK 21 
YGK H2  H2  H 0 1 N N N N N N 29.258 3.010  57.548 3.437  -1.412 1.632  H2  YGK 22 
YGK H3  H3  H 0 1 N N N N N N 28.401 5.635  57.003 3.508  -0.381 -0.623 H3  YGK 23 
YGK H4  H4  H 0 1 N N N N N N 26.967 4.605  56.676 3.526  1.237  0.118  H4  YGK 24 
YGK H5  H5  H 0 1 N N N N N N 26.654 4.750  58.985 5.715  0.186  1.423  H5  YGK 25 
YGK H6  H6  H 0 1 N N N N N N 28.970 5.538  61.706 8.168  0.578  0.155  H6  YGK 26 
YGK H7  H7  H 0 1 N N N N N N 27.529 6.225  60.883 8.041  1.674  -1.241 H7  YGK 27 
YGK H8  H8  H 0 1 N N N N N N 27.505 4.527  61.466 7.361  2.155  0.332  H8  YGK 28 
YGK H9  H9  H 0 1 N N N N N N 32.033 4.522  53.368 -3.886 -2.968 -1.204 H9  YGK 29 
YGK H10 H10 H 0 1 N N N N N N 33.057 3.930  52.016 -2.636 -3.495 -0.052 H10 YGK 30 
YGK H11 H11 H 0 1 N N N N N N 31.626 2.980  52.542 -3.994 -2.488 0.506  H11 YGK 31 
YGK H12 H12 H 0 1 N N N N N N 28.478 4.401  54.377 0.261  0.808  2.548  H12 YGK 32 
YGK H13 H13 H 0 1 N N N N N N 29.826 5.588  54.351 1.654  1.757  1.974  H13 YGK 33 
YGK H14 H14 H 0 1 N N N N N N 30.084 3.922  53.731 0.343  1.329  0.848  H14 YGK 34 
YGK H15 H15 H 0 1 N N N N N N 37.473 -0.351 51.102 -7.907 2.475  0.668  H15 YGK 35 
YGK H16 H16 H 0 1 N N N N N N 36.000 -1.003 50.307 -6.428 2.509  1.658  H16 YGK 36 
YGK H17 H17 H 0 1 N N N N N N 36.158 0.763  50.595 -6.464 3.338  0.083  H17 YGK 37 
YGK H18 H18 H 0 1 N N N N N N 34.475 1.662  51.465 -5.048 -0.268 -1.847 H18 YGK 38 
YGK H19 H19 H 0 1 N N N N N N 32.828 1.051  51.843 -5.011 -1.096 -0.272 H19 YGK 39 
YGK H20 H20 H 0 1 N N N N N N 34.543 1.256  54.294 -2.558 0.545  -1.211 H20 YGK 40 
YGK H21 H21 H 0 1 N N N N N N 33.263 2.661  55.991 -0.664 -2.456 -0.934 H21 YGK 41 
YGK H22 H22 H 0 1 N N N N N N 34.458 3.853  55.377 -0.604 -0.700 -1.216 H22 YGK 42 
YGK H23 H23 H 0 1 N N N N N N 32.956 5.376  56.146 -0.876 -0.300 1.216  H23 YGK 43 
YGK H24 H24 H 0 1 N N N N N N 32.111 5.039  54.597 -0.936 -2.056 1.498  H24 YGK 44 
YGK H25 H25 H 0 1 N N N N N N 31.415 3.741  57.314 1.498  -2.196 0.562  H25 YGK 45 
YGK H26 H26 H 0 1 N N N N N N 30.641 5.309  60.429 4.871  2.128  -1.594 H26 YGK 46 
YGK H27 H27 H 0 1 N N N N N N 30.603 4.159  59.049 6.230  1.654  -2.642 H27 YGK 47 
YGK H28 H28 H 0 1 N N N N N N 30.301 5.908  58.770 4.860  0.542  -2.402 H28 YGK 48 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
YGK C01 C02 SING N N 1  
YGK C04 O03 SING N N 2  
YGK C04 C05 SING N N 3  
YGK O03 C02 SING N N 4  
YGK C02 O16 DOUB N N 5  
YGK C17 C06 SING N N 6  
YGK C05 C06 DOUB N E 7  
YGK C06 C07 SING N N 8  
YGK C18 C10 SING N N 9  
YGK C07 C08 SING N N 10 
YGK C08 C09 SING N N 11 
YGK C10 C09 DOUB N E 12 
YGK C10 C11 SING N N 13 
YGK C11 C12 SING N N 14 
YGK C12 C13 SING N N 15 
YGK C13 O20 SING N N 16 
YGK C13 C14 SING N N 17 
YGK O20 C14 SING N N 18 
YGK C19 C14 SING N N 19 
YGK C14 C15 SING N N 20 
YGK C11 H1  SING N N 21 
YGK C11 H2  SING N N 22 
YGK C12 H3  SING N N 23 
YGK C12 H4  SING N N 24 
YGK C13 H5  SING N N 25 
YGK C15 H6  SING N N 26 
YGK C15 H7  SING N N 27 
YGK C15 H8  SING N N 28 
YGK C17 H9  SING N N 29 
YGK C17 H10 SING N N 30 
YGK C17 H11 SING N N 31 
YGK C18 H12 SING N N 32 
YGK C18 H13 SING N N 33 
YGK C18 H14 SING N N 34 
YGK C01 H15 SING N N 35 
YGK C01 H16 SING N N 36 
YGK C01 H17 SING N N 37 
YGK C04 H18 SING N N 38 
YGK C04 H19 SING N N 39 
YGK C05 H20 SING N N 40 
YGK C07 H21 SING N N 41 
YGK C07 H22 SING N N 42 
YGK C08 H23 SING N N 43 
YGK C08 H24 SING N N 44 
YGK C09 H25 SING N N 45 
YGK C19 H26 SING N N 46 
YGK C19 H27 SING N N 47 
YGK C19 H28 SING N N 48 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
YGK InChI            InChI                1.06  "InChI=1S/C17H28O3/c1-13(9-10-16-17(4,5)20-16)7-6-8-14(2)11-12-19-15(3)18/h7,11,16H,6,8-10,12H2,1-5H3/b13-7+,14-11+/t16-/m1/s1" 
YGK InChIKey         InChI                1.06  GJPPMLNCWMTZJP-YJLFAIMGSA-N                                                                                                     
YGK SMILES_CANONICAL CACTVS               3.385 "CC(=O)OC\C=C(/C)CC/C=C(C)/CC[C@H]1OC1(C)C"                                                                                     
YGK SMILES           CACTVS               3.385 "CC(=O)OCC=C(C)CCC=C(C)CC[CH]1OC1(C)C"                                                                                          
YGK SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C/C(=C\CC/C(=C/COC(=O)C)/C)/CC[C@@H]1C(O1)(C)C"                                                                                
YGK SMILES           "OpenEye OEToolkits" 2.0.7 "CC(=CCCC(=CCOC(=O)C)C)CCC1C(O1)(C)C"                                                                                           
# 
_pdbx_chem_comp_identifier.comp_id           YGK 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "[(2~{E},6~{E})-9-[(2~{R})-3,3-dimethyloxiran-2-yl]-3,7-dimethyl-nona-2,6-dienyl] ethanoate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
YGK "Create component" 2023-12-04 PDBJ 
YGK "Initial release"  2025-04-16 RCSB 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      YGK 
_pdbx_chem_comp_synonyms.name         "[(2~{E},6~{E})-9-[(2~{R})-3,3-dimethyloxiran-2-yl]-3,7-dimethyl-nona-2,6-dienyl] ethanoate" 
_pdbx_chem_comp_synonyms.provenance   PDB 
_pdbx_chem_comp_synonyms.type         ? 
# 
