data_UOL
# 
_chem_comp.id                                    UOL 
_chem_comp.name                                  "1-[[(2~{R},3~{S},4~{R},5~{R})-5-[8-[3-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl-methyl-amino]prop-1-ynyl]-6-azanyl-purin-9-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl]-3-ethyl-urea" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C27 H35 N13 O7" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-09-06 
_chem_comp.pdbx_modified_date                    2025-03-14 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        653.650 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     UOL 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8QGO 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
UOL N4  N1  N 0 1 Y N N N N N 17.073 6.985  8.334  -5.299 -0.806 -0.036 N4  UOL 1  
UOL C4  C1  C 0 1 N N R N N N 18.222 7.386  14.309 3.154  -1.820 0.411  C4  UOL 2  
UOL N3  N2  N 0 1 N N N N N N 14.343 9.349  11.999 -1.669 2.064  2.313  N3  UOL 3  
UOL C2  C2  C 0 1 N N N N N N 16.208 5.555  12.395 6.579  -3.204 0.822  C2  UOL 4  
UOL O2  O1  O 0 1 N N N N N N 19.733 7.316  16.244 0.830  -2.426 -0.025 O2  UOL 5  
UOL C5  C3  C 0 1 N N R N N N 19.487 9.317  14.160 2.441  0.344  -0.004 C5  UOL 6  
UOL N5  N3  N 0 1 Y N N N N N 16.390 5.196  7.157  -4.918 -2.955 0.002  N5  UOL 7  
UOL C6  C4  C 0 1 N N R N N N 18.726 9.393  15.475 1.831  -0.499 -1.153 C6  UOL 8  
UOL O6  O2  O 0 1 N N N N N N 17.936 10.300 7.978  -7.435 1.359  0.864  O6  UOL 9  
UOL N1  N4  N 0 1 N N N N N N 16.418 6.852  12.681 5.398  -2.583 1.013  N1  UOL 10 
UOL N   N5  N 0 1 N N N N N N 15.871 5.293  11.110 7.524  -3.166 1.781  N   UOL 11 
UOL C   C5  C 0 1 N N N N N N 16.927 3.117  10.642 9.693  -3.645 2.805  C   UOL 12 
UOL O   O3  O 0 1 N N N N N N 16.287 4.680  13.253 6.791  -3.800 -0.217 O   UOL 13 
UOL C1  C6  C 0 1 N N N N N N 15.650 3.930  10.629 8.807  -3.842 1.573  C1  UOL 14 
UOL C10 C7  C 0 1 N N N N N N 16.089 10.803 12.924 0.041  3.180  1.049  C10 UOL 15 
UOL C11 C8  C 0 1 N N N N N N 14.660 10.458 12.902 -1.205 3.364  1.811  C11 UOL 16 
UOL C12 C9  C 0 1 N N N N N N 14.224 9.769  10.606 -3.070 2.139  2.751  C12 UOL 17 
UOL C13 C10 C 0 1 N N R N N N 15.583 9.727  9.948  -3.987 2.156  1.526  C13 UOL 18 
UOL C14 C11 C 0 1 N N R N N N 17.063 8.310  8.928  -5.173 0.623  0.259  C14 UOL 19 
UOL C15 C12 C 0 1 N N R N N N 16.806 9.445  7.925  -6.147 1.035  1.392  C15 UOL 20 
UOL C16 C13 C 0 1 N N S N N N 15.549 10.130 8.481  -5.455 2.292  1.973  C16 UOL 21 
UOL C17 C14 C 0 1 Y N N N N N 16.074 6.383  7.617  -4.530 -1.808 0.478  C17 UOL 22 
UOL C18 C15 C 0 1 Y N N N N N 17.692 5.011  7.595  -5.959 -2.764 -0.844 C18 UOL 23 
UOL C19 C16 C 0 1 Y N N N N N 18.122 6.102  8.331  -6.218 -1.383 -0.877 C19 UOL 24 
UOL C20 C17 C 0 1 Y N N N N N 20.112 5.225  8.647  -7.932 -1.758 -2.361 C20 UOL 25 
UOL C21 C18 C 0 1 Y N N N N N 18.620 3.965  7.410  -6.763 -3.608 -1.629 C21 UOL 26 
UOL C22 C19 C 0 1 N N N N N N 13.246 8.563  12.515 -0.804 1.579  3.397  C22 UOL 27 
UOL C23 C20 C 0 1 Y N N N N N 20.452 12.294 12.376 4.012  3.287  -1.492 C23 UOL 28 
UOL C24 C21 C 0 1 Y N N N N N 20.796 11.157 13.085 4.001  1.901  -1.253 C24 UOL 29 
UOL C25 C22 C 0 1 Y N N N N N 22.943 11.529 12.819 5.950  1.696  -2.454 C25 UOL 30 
UOL C26 C23 C 0 1 Y N N N N N 21.506 13.057 11.846 5.070  3.820  -2.252 C26 UOL 31 
UOL C3  C24 C 0 1 N N N N N N 16.736 7.284  14.028 4.331  -2.715 0.018  C3  UOL 32 
UOL C7  C25 C 0 1 N N S N N N 18.548 7.896  15.714 2.029  -1.944 -0.635 C7  UOL 33 
UOL C8  C26 C 0 1 Y N N N N N 18.622 11.347 12.892 2.246  2.852  -0.300 C8  UOL 34 
UOL C9  C27 C 0 1 N N N N N N 17.271 10.976 12.964 1.034  3.032  0.441  C9  UOL 35 
UOL N10 N6  N 0 1 Y N N N N N 22.031 10.719 13.351 4.980  1.152  -1.748 N10 UOL 36 
UOL N11 N7  N 0 1 Y N N N N N 22.762 12.638 12.097 6.004  2.991  -2.705 N11 UOL 37 
UOL N12 N8  N 0 1 N N N N N N 21.329 14.142 11.075 5.135  5.176  -2.521 N12 UOL 38 
UOL N2  N9  N 0 1 Y N N N N N 19.611 10.548 13.406 2.880  1.651  -0.501 N2  UOL 39 
UOL N6  N10 N 0 1 Y N N N N N 19.321 6.267  8.895  -7.205 -0.929 -1.642 N6  UOL 40 
UOL N7  N11 N 0 1 Y N N N N N 19.847 4.117  7.953  -7.727 -3.062 -2.363 N7  UOL 41 
UOL N8  N12 N 0 1 N N N N N N 18.349 2.826  6.761  -6.556 -4.977 -1.637 N8  UOL 42 
UOL N9  N13 N 0 1 Y N N N N N 19.074 12.423 12.277 2.925  3.811  -0.885 N9  UOL 43 
UOL O1  O4  O 0 1 N N N N N N 18.800 8.349  13.393 3.571  -0.444 0.428  O1  UOL 44 
UOL O3  O5  O 0 1 N N N N N N 19.479 10.074 16.472 0.443  -0.203 -1.320 O3  UOL 45 
UOL O4  O6  O 0 1 N N N N N N 16.044 8.364  9.910  -3.871 0.914  0.812  O4  UOL 46 
UOL O5  O7  O 0 1 N N N N N N 15.582 11.548 8.375  -6.036 3.479  1.429  O5  UOL 47 
UOL H   H1  H 0 1 N N N N N N 18.687 6.399  14.167 2.782  -2.107 1.395  H   UOL 48 
UOL H17 H3  H 0 1 N N N N N N 19.596 6.386  16.383 0.073  -2.469 -0.625 H17 UOL 49 
UOL H1  H4  H 0 1 N N N N N N 20.497 8.943  14.383 1.724  0.464  0.807  H1  UOL 50 
UOL H2  H5  H 0 1 N N N N N N 17.746 9.867  15.316 2.376  -0.341 -2.084 H2  UOL 51 
UOL H24 H6  H 0 1 N N N N N N 17.818 11.020 7.369  -8.079 1.623  1.535  H24 UOL 52 
UOL H14 H7  H 0 1 N N N N N N 16.354 7.532  11.950 5.256  -2.048 1.809  H14 UOL 53 
UOL H13 H8  H 0 1 N N N N N N 15.770 6.055  10.470 7.355  -2.691 2.610  H13 UOL 54 
UOL H9  H9  H 0 1 N N N N N N 16.719 2.101  10.274 9.864  -2.581 2.963  H9  UOL 55 
UOL H8  H10 H 0 1 N N N N N N 17.674 3.597  9.992  9.198  -4.067 3.680  H8  UOL 56 
UOL H10 H11 H 0 1 N N N N N N 17.316 3.063  11.669 10.647 -4.148 2.650  H10 UOL 57 
UOL H12 H12 H 0 1 N N N N N N 15.266 3.973  9.599  8.636  -4.907 1.415  H12 UOL 58 
UOL H11 H13 H 0 1 N N N N N N 14.909 3.439  11.277 9.302  -3.420 0.699  H11 UOL 59 
UOL H20 H14 H 0 1 N N N N N N 14.353 10.177 13.920 -1.967 3.796  1.162  H20 UOL 60 
UOL H19 H15 H 0 1 N N N N N N 14.092 11.343 12.579 -1.021 4.034  2.651  H19 UOL 61 
UOL H21 H16 H 0 1 N N N N N N 13.539 9.091  10.076 -3.304 1.271  3.368  H21 UOL 62 
UOL H22 H17 H 0 1 N N N N N N 13.829 10.795 10.565 -3.221 3.049  3.331  H22 UOL 63 
UOL H4  H18 H 0 1 N N N N N N 16.288 10.369 10.497 -3.717 2.986  0.873  H4  UOL 64 
UOL H5  H19 H 0 1 N N N N N N 18.038 8.495  9.403  -5.353 1.216  -0.637 H5  UOL 65 
UOL H6  H20 H 0 1 N N N N N N 16.622 9.045  6.917  -6.223 0.249  2.144  H6  UOL 66 
UOL H7  H21 H 0 1 N N N N N N 14.653 9.712  7.998  -5.524 2.297  3.061  H7  UOL 67 
UOL H25 H22 H 0 1 N N N N N N 15.112 6.844  7.446  -3.719 -1.669 1.177  H25 UOL 68 
UOL H26 H23 H 0 1 N N N N N N 21.106 5.285  9.066  -8.726 -1.355 -2.973 H26 UOL 69 
UOL H29 H24 H 0 1 N N N N N N 13.027 7.738  11.821 -0.745 2.335  4.180  H29 UOL 70 
UOL H30 H25 H 0 1 N N N N N N 13.520 8.152  13.498 -1.220 0.660  3.810  H30 UOL 71 
UOL H31 H26 H 0 1 N N N N N N 12.356 9.200  12.619 0.194  1.383  3.005  H31 UOL 72 
UOL H32 H27 H 0 1 N N N N N N 23.972 11.251 12.995 6.731  1.059  -2.841 H32 UOL 73 
UOL H16 H28 H 0 1 N N N N N N 16.285 8.274  14.189 4.000  -3.753 -0.023 H16 UOL 74 
UOL H15 H29 H 0 1 N N N N N N 16.299 6.563  14.735 4.706  -2.414 -0.960 H15 UOL 75 
UOL H3  H30 H 0 1 N N N N N N 17.689 7.725  16.379 2.335  -2.604 -1.447 H3  UOL 76 
UOL H34 H31 H 0 1 N N N N N N 22.219 14.495 10.787 4.447  5.771  -2.184 H34 UOL 77 
UOL H33 H32 H 0 1 N N N N N N 20.792 13.894 10.269 5.869  5.531  -3.046 H33 UOL 78 
UOL H27 H33 H 0 1 N N N N N N 19.152 2.230  6.783  -5.849 -5.363 -1.097 H27 UOL 79 
UOL H28 H34 H 0 1 N N N N N N 17.580 2.365  7.203  -7.117 -5.549 -2.183 H28 UOL 80 
UOL H18 H35 H 0 1 N N N N N N 18.980 10.106 17.280 0.016  -0.706 -2.027 H18 UOL 81 
UOL H23 H36 H 0 1 N N N N N N 14.781 11.912 8.734  -6.976 3.585  1.630  H23 UOL 82 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
UOL C   C1  SING N N 1  
UOL C1  N   SING N N 2  
UOL N   C2  SING N N 3  
UOL C2  O   DOUB N N 4  
UOL N1  C2  SING N N 5  
UOL C3  N1  SING N N 6  
UOL C4  C3  SING N N 7  
UOL C4  O1  SING N N 8  
UOL O1  C5  SING N N 9  
UOL C5  C6  SING N N 10 
UOL C6  C7  SING N N 11 
UOL C7  C4  SING N N 12 
UOL O2  C7  SING N N 13 
UOL O3  C6  SING N N 14 
UOL N2  C5  SING N N 15 
UOL N2  C8  SING Y N 16 
UOL C9  C8  SING N N 17 
UOL C10 C9  TRIP N N 18 
UOL C11 C10 SING N N 19 
UOL N3  C11 SING N N 20 
UOL C12 N3  SING N N 21 
UOL C13 C12 SING N N 22 
UOL C13 O4  SING N N 23 
UOL O4  C14 SING N N 24 
UOL C14 C15 SING N N 25 
UOL C15 C16 SING N N 26 
UOL C16 C13 SING N N 27 
UOL O5  C16 SING N N 28 
UOL O6  C15 SING N N 29 
UOL N4  C14 SING N N 30 
UOL N4  C17 SING Y N 31 
UOL C17 N5  DOUB Y N 32 
UOL N5  C18 SING Y N 33 
UOL C18 C19 DOUB Y N 34 
UOL C19 N4  SING Y N 35 
UOL N6  C19 SING Y N 36 
UOL C20 N6  DOUB Y N 37 
UOL N7  C20 SING Y N 38 
UOL C21 N7  DOUB Y N 39 
UOL C18 C21 SING Y N 40 
UOL N8  C21 SING N N 41 
UOL C22 N3  SING N N 42 
UOL C8  N9  DOUB Y N 43 
UOL N9  C23 SING Y N 44 
UOL C23 C24 DOUB Y N 45 
UOL C24 N2  SING Y N 46 
UOL N10 C24 SING Y N 47 
UOL C25 N10 DOUB Y N 48 
UOL N11 C25 SING Y N 49 
UOL C26 N11 DOUB Y N 50 
UOL C23 C26 SING Y N 51 
UOL N12 C26 SING N N 52 
UOL C4  H   SING N N 53 
UOL O2  H17 SING N N 54 
UOL C5  H1  SING N N 55 
UOL C6  H2  SING N N 56 
UOL O6  H24 SING N N 57 
UOL N1  H14 SING N N 58 
UOL N   H13 SING N N 59 
UOL C   H9  SING N N 60 
UOL C   H8  SING N N 61 
UOL C   H10 SING N N 62 
UOL C1  H12 SING N N 63 
UOL C1  H11 SING N N 64 
UOL C11 H20 SING N N 65 
UOL C11 H19 SING N N 66 
UOL C12 H21 SING N N 67 
UOL C12 H22 SING N N 68 
UOL C13 H4  SING N N 69 
UOL C14 H5  SING N N 70 
UOL C15 H6  SING N N 71 
UOL C16 H7  SING N N 72 
UOL C17 H25 SING N N 73 
UOL C20 H26 SING N N 74 
UOL C22 H29 SING N N 75 
UOL C22 H30 SING N N 76 
UOL C22 H31 SING N N 77 
UOL C25 H32 SING N N 78 
UOL C3  H16 SING N N 79 
UOL C3  H15 SING N N 80 
UOL C7  H3  SING N N 81 
UOL N12 H34 SING N N 82 
UOL N12 H33 SING N N 83 
UOL N8  H27 SING N N 84 
UOL N8  H28 SING N N 85 
UOL O3  H18 SING N N 86 
UOL O5  H23 SING N N 87 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
UOL InChI            InChI                1.06  "InChI=1S/C27H35N13O7/c1-3-30-27(45)31-7-12-17(41)20(44)26(46-12)40-14(37-16-22(29)33-10-35-24(16)40)5-4-6-38(2)8-13-18(42)19(43)25(47-13)39-11-36-15-21(28)32-9-34-23(15)39/h9-13,17-20,25-26,41-44H,3,6-8H2,1-2H3,(H2,28,32,34)(H2,29,33,35)(H2,30,31,45)/t12-,13-,17-,18-,19-,20-,25-,26-/m1/s1" 
UOL InChIKey         InChI                1.06  SKRVTLNQCVUAMA-DQSURDJZSA-N                                                                                                                                                                                                                                                                         
UOL SMILES_CANONICAL CACTVS               3.385 "CCNC(=O)NC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2c(nc3c(N)ncnc23)C#CCN(C)C[C@H]4O[C@H]([C@H](O)[C@@H]4O)n5cnc6c(N)ncnc56"                                                                                                                                                                                 
UOL SMILES           CACTVS               3.385 "CCNC(=O)NC[CH]1O[CH]([CH](O)[CH]1O)n2c(nc3c(N)ncnc23)C#CCN(C)C[CH]4O[CH]([CH](O)[CH]4O)n5cnc6c(N)ncnc56"                                                                                                                                                                                           
UOL SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCNC(=O)NC[C@@H]1[C@H]([C@H]([C@@H](O1)n2c(nc3c2ncnc3N)C#CCN(C)C[C@@H]4[C@H]([C@H]([C@@H](O4)n5cnc6c5ncnc6N)O)O)O)O"                                                                                                                                                                               
UOL SMILES           "OpenEye OEToolkits" 2.0.7 "CCNC(=O)NCC1C(C(C(O1)n2c(nc3c2ncnc3N)C#CCN(C)CC4C(C(C(O4)n5cnc6c5ncnc6N)O)O)O)O"                                                                                                                                                                                                                   
# 
_pdbx_chem_comp_identifier.comp_id           UOL 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "1-[[(2~{R},3~{S},4~{R},5~{R})-5-[8-[3-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl-methyl-amino]prop-1-ynyl]-6-azanyl-purin-9-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl]-3-ethyl-urea" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
UOL "Create component" 2023-09-06 PDBE 
UOL "Initial release"  2025-03-19 RCSB 
# 
