data_YTL
# 
_chem_comp.id                                    YTL 
_chem_comp.name                                  "(2~{S})-2-(2-azanylethanoyloxy)-3-(4-hydroxyphenyl)propanoic acid" 
_chem_comp.type                                  "L-peptide linking" 
_chem_comp.pdbx_type                             ATOMP 
_chem_comp.formula                               "C11 H13 N O5" 
_chem_comp.mon_nstd_parent_comp_id               TYR 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-02-21 
_chem_comp.pdbx_modified_date                    2025-03-21 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        239.225 
_chem_comp.one_letter_code                       Y 
_chem_comp.three_letter_code                     YTL 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4MSW 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
YTL C1  C1  C 0 1 N N N N N N -2.868 -1.852 6.703 -2.408 1.697  -0.028 C1  YTL 1  
YTL C2  C2  C 0 1 N N S N N N -3.773 -1.418 5.547 -1.115 0.930  0.087  C2  YTL 2  
YTL C3  C3  C 0 1 N N N N N N -5.217 -1.514 6.041 0.017  1.743  -0.543 C3  YTL 3  
YTL C4  C4  C 0 1 Y N N N N N -6.258 -0.923 5.123 1.328  1.035  -0.320 C4  YTL 4  
YTL C5  C5  C 0 1 Y N N N N N -6.234 0.423  4.777 1.783  0.116  -1.248 C5  YTL 5  
YTL C7  C6  C 0 1 Y N N N N N -8.235 0.164  3.510 3.736  -0.266 0.089  C7  YTL 6  
YTL C9  C7  C 0 1 Y N N N N N -7.301 -1.700 4.651 2.078  1.309  0.810  C9  YTL 7  
YTL N   N1  N 0 1 N N N N N N -3.049 -3.096 1.515 -2.344 -3.698 0.449  N   YTL 8  
YTL CA  C8  C 0 1 N N N N N N -2.309 -3.485 2.710 -1.846 -2.733 -0.540 CA  YTL 9  
YTL C   C9  C 0 1 N N N N N N -2.394 -2.543 3.911 -1.688 -1.383 0.112  C   YTL 10 
YTL O   O1  O 0 1 N N N N N N -1.370 -2.086 4.448 -1.963 -1.240 1.280  O   YTL 11 
YTL O1  O2  O 0 1 N N N N N N -2.288 -1.005 7.440 -3.309 1.263  -0.706 O1  YTL 12 
YTL O3  O3  O 0 1 N N N N N N -9.218 0.667  2.708 4.919  -0.904 0.289  O3  YTL 13 
YTL O4  O4  O 0 1 N N N N N N -3.602 -2.250 4.358 -1.243 -0.340 -0.606 O4  YTL 14 
YTL C6  C10 C 0 1 Y N N N N N -7.224 0.969  3.966 2.985  -0.535 -1.046 C6  YTL 15 
YTL C8  C11 C 0 1 Y N N N N N -8.277 -1.167 3.849 3.280  0.661  1.016  C8  YTL 16 
YTL H2  H2  H 0 1 N N N N N N -3.552 -0.369 5.300 -0.892 0.750  1.139  H2  YTL 17 
YTL H3  H3  H 0 1 N N N N N N -5.280 -0.991 7.007 -0.162 1.848  -1.613 H3  YTL 18 
YTL H4  H4  H 0 1 N N N N N N -5.456 -2.578 6.184 0.055  2.731  -0.082 H4  YTL 19 
YTL H5  H5  H 0 1 N N N N N N -5.437 1.053  5.142 1.198  -0.093 -2.131 H5  YTL 20 
YTL H6  H6  H 0 1 N N N N N N -7.347 -2.745 4.919 1.722  2.030  1.531  H6  YTL 21 
YTL H7  H7  H 0 1 N N N N N N -2.918 -3.785 0.802 -3.207 -3.379 0.863  H7  YTL 22 
YTL H8  H8  H 0 1 N N N N N N -4.022 -3.024 1.734 -2.458 -4.612 0.036  H8  YTL 23 
YTL H10 H10 H 0 1 N N N N N N -2.687 -4.467 3.030 -0.881 -3.068 -0.920 H10 YTL 24 
YTL H11 H11 H 0 1 N N N N N N -1.249 -3.573 2.431 -2.555 -2.658 -1.364 H11 YTL 25 
YTL H12 H12 H 0 1 N N N N N N -9.062 1.592  2.558 4.840  -1.732 0.783  H12 YTL 26 
YTL H13 H13 H 0 1 N N N N N N -7.196 2.015  3.699 3.337  -1.256 -1.769 H13 YTL 27 
YTL H14 H14 H 0 1 N N N N N N -9.078 -1.793 3.484 3.863  0.872  1.900  H14 YTL 28 
YTL OXT OXT O 0 1 N Y N N N N -2.781 -3.168 6.888 -2.560 2.858  0.628  OXT YTL 29 
YTL H1  H1  H 0 1 N Y N N N N -2.229 -3.347 7.640 -3.408 3.311  0.527  H1  YTL 30 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
YTL N   CA  SING N N 1  
YTL O3  C7  SING N N 2  
YTL CA  C   SING N N 3  
YTL C7  C8  DOUB Y N 4  
YTL C7  C6  SING Y N 5  
YTL C8  C9  SING Y N 6  
YTL C   O4  SING N N 7  
YTL C   O   DOUB N N 8  
YTL C6  C5  DOUB Y N 9  
YTL O4  C2  SING N N 10 
YTL C9  C4  DOUB Y N 11 
YTL C5  C4  SING Y N 12 
YTL C4  C3  SING N N 13 
YTL C2  C3  SING N N 14 
YTL C2  C1  SING N N 15 
YTL C1  O1  DOUB N N 16 
YTL C2  H2  SING N N 17 
YTL C3  H3  SING N N 18 
YTL C3  H4  SING N N 19 
YTL C5  H5  SING N N 20 
YTL C9  H6  SING N N 21 
YTL N   H7  SING N N 22 
YTL N   H8  SING N N 23 
YTL CA  H10 SING N N 24 
YTL CA  H11 SING N N 25 
YTL O3  H12 SING N N 26 
YTL C6  H13 SING N N 27 
YTL C8  H14 SING N N 28 
YTL C1  OXT SING N N 29 
YTL OXT H1  SING N N 30 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
YTL InChI            InChI                1.06  "InChI=1S/C11H13NO5/c12-6-10(14)17-9(11(15)16)5-7-1-3-8(13)4-2-7/h1-4,9,13H,5-6,12H2,(H,15,16)/t9-/m0/s1" 
YTL InChIKey         InChI                1.06  MXLPCJHNYUDPMI-VIFPVBQESA-N                                                                               
YTL SMILES_CANONICAL CACTVS               3.385 "NCC(=O)O[C@@H](Cc1ccc(O)cc1)C(O)=O"                                                                      
YTL SMILES           CACTVS               3.385 "NCC(=O)O[CH](Cc1ccc(O)cc1)C(O)=O"                                                                        
YTL SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1C[C@@H](C(=O)O)OC(=O)CN)O"                                                                      
YTL SMILES           "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1CC(C(=O)O)OC(=O)CN)O"                                                                           
# 
_pdbx_chem_comp_identifier.comp_id           YTL 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(2~{S})-2-(2-azanylethanoyloxy)-3-(4-hydroxyphenyl)propanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
YTL "Create component"      2023-02-21 RCSB 
YTL "Modify parent residue" 2023-02-21 RCSB 
YTL "Initial release"       2025-03-26 RCSB 
# 
