data_6IM
# 
_chem_comp.id                                    6IM 
_chem_comp.name                                  "acetylamino coenzyme A" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C23 H39 N8 O17 P3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "(3R)-4-({3-[(2-acetamidoethyl)amino]-3-oxopropyl}amino)-3-hydroxy-2,2-dimethyl-4-oxobutyl [(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-4-hydroxy-3-(phosphonooxy)oxolan-2-yl]methyl dihydrogen diphosphate (non-preferred name)" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2021-08-09 
_chem_comp.pdbx_modified_date                    2025-08-29 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        792.520 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     6IM 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7RQO 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
6IM C02  C1  C 0 1 N N R N N N 11.913 28.232 26.034 5.125   4.471  -2.303 C02  6IM 1  
6IM C03  C2  C 0 1 N N N N N N 11.326 29.639 25.886 3.643   4.099  -2.222 C03  6IM 2  
6IM C04  C3  C 0 1 N N N N N N 11.834 30.420 24.695 3.458   2.642  -2.652 C04  6IM 3  
6IM C05  C4  C 0 1 N N N N N N 9.808  29.566 25.690 3.152   4.272  -0.783 C05  6IM 4  
6IM C11  C5  C 0 1 N N N N N N 4.742  28.424 23.089 -3.864  1.298  1.144  C11  6IM 5  
6IM C12  C6  C 0 1 N N R N N N 4.817  27.305 22.081 -4.610  0.491  0.079  C12  6IM 6  
6IM C13  C7  C 0 1 N N S N N N 4.066  27.583 21.053 -5.865  -0.156 0.697  C13  6IM 7  
6IM C14  C8  C 0 1 N N R N N N 3.881  26.225 20.384 -5.664  -1.673 0.461  C14  6IM 8  
6IM C15  C9  C 0 1 N N R N N N 3.591  25.417 21.691 -4.641  -1.688 -0.703 C15  6IM 9  
6IM C18  C10 C 0 1 Y N N N N N 1.168  25.453 21.214 -2.668  -3.154 -0.133 C18  6IM 10 
6IM C20  C11 C 0 1 Y N N N N N 0.341  26.266 23.009 -3.238  -5.037 -1.043 C20  6IM 11 
6IM C21  C12 C 0 1 Y N N N N N 1.700  26.199 23.169 -4.272  -4.121 -1.295 C21  6IM 12 
6IM C23  C13 C 0 1 Y N N N N N 1.484  27.056 25.278 -5.420  -5.756 -2.431 C23  6IM 13 
6IM C25  C14 C 0 1 Y N N N N N -0.424 26.755 24.051 -3.375  -6.346 -1.538 C25  6IM 14 
6IM C37  C15 C 0 1 N N N N N N 11.631 30.395 27.182 2.837   5.011  -3.149 C37  6IM 15 
6IM C38  C16 C 0 1 N N N N N N 13.420 28.192 26.115 5.900   3.671  -1.288 C38  6IM 16 
6IM C40  C17 C 0 1 N N N N N N 15.528 27.834 24.699 6.705   1.546  -0.407 C40  6IM 17 
6IM C41  C18 C 0 1 N N N N N N 16.181 29.066 25.292 6.724   0.075  -0.824 C41  6IM 18 
6IM C42  C19 C 0 1 N N N N N N 15.628 30.429 24.878 7.413   -0.740 0.240  C42  6IM 19 
6IM C44  C20 C 0 1 N N N N N N 14.510 32.572 25.640 8.217   -2.865 1.122  C44  6IM 20 
6IM C45  C21 C 0 1 N N N N N N 15.715 33.430 26.023 8.237   -4.336 0.704  C45  6IM 21 
6IM C47  C22 C 0 1 N N N N N N 15.184 35.599 25.009 9.042   -6.461 1.586  C47  6IM 22 
6IM C48  C23 C 0 1 N N N N N N 14.928 37.080 25.070 9.730   -7.276 2.650  C48  6IM 23 
6IM N17  N1  N 0 1 Y N N N N N 2.178  25.673 22.024 -3.885  -2.943 -0.709 N17  6IM 24 
6IM N19  N2  N 0 1 Y N N N N N 0.035  25.805 21.798 -2.290  -4.383 -0.330 N19  6IM 25 
6IM N22  N3  N 0 1 Y N N N N N 2.248  26.600 24.310 -5.335  -4.521 -1.987 N22  6IM 26 
6IM N24  N4  N 0 1 Y N N N N N 0.170  27.139 25.157 -4.473  -6.653 -2.219 N24  6IM 27 
6IM N26  N5  N 0 1 N N N N N N -1.858 26.805 23.857 -2.388  -7.292 -1.322 N26  6IM 28 
6IM N39  N6  N 0 1 N N N N N N 14.084 27.928 24.846 6.035   2.339  -1.441 N39  6IM 29 
6IM N43  N7  N 0 1 N N N N N N 15.026 31.242 25.919 7.548   -2.072 0.087  N43  6IM 30 
6IM N46  N8  N 0 1 N N N N N N 15.457 34.840 26.190 8.906   -5.129 1.739  N46  6IM 31 
6IM O01  O1  O 0 1 N N N N N N 11.539 27.421 24.932 5.281   5.865  -2.030 O01  6IM 32 
6IM O06  O2  O 0 1 N N N N N N 9.301  28.740 26.690 1.768   3.924  -0.707 O06  6IM 33 
6IM O08  O3  O 0 1 N N N N N N 6.868  28.531 26.255 -0.558  3.407  0.404  O08  6IM 34 
6IM O10  O4  O 0 1 N N N N N N 5.748  28.141 24.003 -2.759  1.975  0.541  O10  6IM 35 
6IM O16  O5  O 0 1 N N N N N N 4.257  25.907 22.677 -3.774  -0.573 -0.404 O16  6IM 36 
6IM O27  O6  O 0 1 N N N N N N 4.966  25.750 19.736 -6.890  -2.295 0.070  O27  6IM 37 
6IM O28  O7  O 0 1 N N N N N N 4.816  28.593 20.264 -7.043  0.305  0.032  O28  6IM 38 
6IM O30  O8  O 0 1 N N N N N N 5.212  31.001 19.639 -8.918  0.107  1.865  O30  6IM 39 
6IM O31  O9  O 0 1 N N N N N N 3.437  29.787 18.502 -7.671  2.269  1.488  O31  6IM 40 
6IM O32  O10 O 0 1 N N N N N N 3.106  30.505 20.849 -9.328  1.567  -0.283 O32  6IM 41 
6IM O33  O11 O 0 1 N N N N N N 4.314  28.829 26.145 -2.551  4.201  1.924  O33  6IM 42 
6IM O34  O12 O 0 1 N N N N N N 5.432  26.528 25.970 -1.186  2.159  2.506  O34  6IM 43 
6IM O35  O13 O 0 1 N N N N N N 8.687  26.770 25.252 1.597   3.178  1.698  O35  6IM 44 
6IM O36  O14 O 0 1 N N N N N N 8.212  26.746 27.669 0.818   5.517  1.156  O36  6IM 45 
6IM O49  O15 O 0 1 N N N N N N 15.157 35.062 24.010 8.609   -7.004 0.591  O49  6IM 46 
6IM O50  O16 O 0 1 N N N N N N 15.689 30.804 23.746 7.845   -0.197 1.235  O50  6IM 47 
6IM O51  O17 O 0 1 N N N N N N 13.987 28.340 27.150 6.402   4.225  -0.333 O51  6IM 48 
6IM P07  P1  P 0 1 N N N N N N 8.199  27.589 26.403 0.921   3.989  0.660  P07  6IM 49 
6IM P09  P2  P 0 1 N N N N N N 5.452  28.000 25.602 -1.751  2.919  1.369  P09  6IM 50 
6IM P29  P3  P 0 1 N N N N N N 4.116  29.999 19.849 -8.228  1.088  0.791  P29  6IM 51 
6IM H021 H1  H 0 0 N N N N N N 11.510 27.795 26.960 5.500   4.252  -3.302 H021 6IM 52 
6IM H043 H2  H 0 0 N N N N N N 12.928 30.519 24.760 3.938   1.986  -1.926 H043 6IM 53 
6IM H041 H3  H 0 0 N N N N N N 11.568 29.890 23.769 2.395   2.411  -2.704 H041 6IM 54 
6IM H042 H4  H 0 0 N N N N N N 11.376 31.420 24.690 3.911   2.493  -3.632 H042 6IM 55 
6IM H052 H5  H 0 0 N N N N N N 9.369  30.571 25.773 3.726   3.622  -0.123 H052 6IM 56 
6IM H051 H6  H 0 0 N N N N N N 9.576  29.145 24.700 3.283   5.310  -0.476 H051 6IM 57 
6IM H112 H7  H 0 0 N N N N N N 4.920  29.395 22.605 -4.540  2.029  1.586  H112 6IM 58 
6IM H111 H8  H 0 0 N N N N N N 3.760  28.435 23.584 -3.498  0.625  1.919  H111 6IM 59 
6IM H121 H9  H 0 0 N N N N N N 5.868  27.149 21.796 -4.895  1.143  -0.747 H121 6IM 60 
6IM H131 H10 H 0 0 N N N N N N 3.083  27.986 21.339 -5.920  0.060  1.763  H131 6IM 61 
6IM H141 H11 H 0 0 N N N N N N 2.980  26.237 19.753 -5.252  -2.153 1.348  H141 6IM 62 
6IM H151 H12 H 0 0 N N N N N N 3.767  24.346 21.514 -5.144  -1.540 -1.659 H151 6IM 63 
6IM H181 H13 H 0 0 N N N N N N 1.251  25.045 20.218 -2.099  -2.409 0.404  H181 6IM 64 
6IM H231 H14 H 0 0 N N N N N N 1.945  27.373 26.202 -6.297  -6.049 -2.990 H231 6IM 65 
6IM H371 H15 H 0 0 N N N N N N 11.257 29.818 28.041 3.145   4.844  -4.181 H371 6IM 66 
6IM H372 H16 H 0 0 N N N N N N 12.718 30.533 27.279 1.775   4.786  -3.046 H372 6IM 67 
6IM H373 H17 H 0 0 N N N N N N 11.137 31.378 27.158 3.016   6.052  -2.880 H373 6IM 68 
6IM H401 H18 H 0 0 N N N N N N 15.892 26.938 25.224 6.166   1.650  0.535  H401 6IM 69 
6IM H402 H19 H 0 0 N N N N N N 15.783 27.762 23.631 7.727   1.902  -0.282 H402 6IM 70 
6IM H411 H20 H 0 0 N N N N N N 16.090 28.992 26.386 5.701   -0.281 -0.949 H411 6IM 71 
6IM H412 H21 H 0 0 N N N N N N 17.244 29.043 25.010 7.262   -0.029 -1.766 H412 6IM 72 
6IM H442 H22 H 0 0 N N N N N N 14.249 32.691 24.578 7.679   -2.761 2.064  H442 6IM 73 
6IM H441 H23 H 0 0 N N N N N N 13.633 32.805 26.261 9.240   -2.509 1.247  H441 6IM 74 
6IM H452 H24 H 0 0 N N N N N N 16.114 33.046 26.973 7.214   -4.692 0.579  H452 6IM 75 
6IM H451 H25 H 0 0 N N N N N N 16.473 33.317 25.234 8.775   -4.440 -0.238 H451 6IM 76 
6IM H483 H26 H 0 0 N N N N N N 14.736 37.461 24.056 10.049  -6.620 3.461  H483 6IM 77 
6IM H481 H27 H 0 0 N N N N N N 14.053 37.275 25.707 9.040   -8.024 3.038  H481 6IM 78 
6IM H482 H28 H 0 0 N N N N N N 15.808 37.587 25.492 10.601  -7.772 2.221  H482 6IM 79 
6IM H262 H29 H 0 0 N N N N N N -2.294 27.168 24.680 -1.590  -7.055 -0.823 H262 6IM 80 
6IM H261 H30 H 0 0 N N N N N N -2.069 27.397 23.079 -2.494  -8.191 -1.669 H261 6IM 81 
6IM H391 H31 H 0 0 N N N N N N 13.517 27.805 24.032 5.689   1.904  -2.237 H391 6IM 82 
6IM H431 H32 H 0 0 N N N N N N 14.965 30.879 26.849 7.202   -2.507 -0.708 H431 6IM 83 
6IM H461 H33 H 0 0 N N N N N N 15.469 35.268 27.094 9.253   -4.694 2.534  H461 6IM 84 
6IM H011 H34 H 0 0 N N N N N N 10.620 27.192 25.004 4.968   6.133  -1.156 H011 6IM 85 
6IM H271 H35 H 0 0 N N N N N N 4.762  24.905 19.352 -6.815  -3.245 -0.089 H271 6IM 86 
6IM H1   H36 H 0 1 N N N N N N 5.228  31.267 18.727 -9.306  -0.690 1.478  H1   6IM 87 
6IM H2   H37 H 0 1 N N N N N N 2.257  30.586 20.430 -10.073 2.047  0.105  H2   6IM 88 
6IM H3   H38 H 0 1 N N N N N N 3.735  28.276 26.656 -2.949  4.746  1.232  H3   6IM 89 
6IM H4   H39 H 0 1 N N N N N N 8.528  25.873 27.466 0.385   6.107  0.525  H4   6IM 90 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
6IM O31 P29  DOUB N N 1  
6IM O30 P29  SING N N 2  
6IM O27 C14  SING N N 3  
6IM P29 O28  SING N N 4  
6IM P29 O32  SING N N 5  
6IM O28 C13  SING N N 6  
6IM C14 C13  SING N N 7  
6IM C14 C15  SING N N 8  
6IM C13 C12  SING N N 9  
6IM C18 N19  DOUB Y N 10 
6IM C18 N17  SING Y N 11 
6IM C15 N17  SING N N 12 
6IM C15 O16  SING N N 13 
6IM N19 C20  SING Y N 14 
6IM N17 C21  SING Y N 15 
6IM C12 O16  SING N N 16 
6IM C12 C11  SING N N 17 
6IM C20 C21  DOUB Y N 18 
6IM C20 C25  SING Y N 19 
6IM C11 O10  SING N N 20 
6IM C21 N22  SING Y N 21 
6IM O50 C42  DOUB N N 22 
6IM N26 C25  SING N N 23 
6IM O10 P09  SING N N 24 
6IM O49 C47  DOUB N N 25 
6IM C25 N24  DOUB Y N 26 
6IM N22 C23  DOUB Y N 27 
6IM C04 C03  SING N N 28 
6IM C40 N39  SING N N 29 
6IM C40 C41  SING N N 30 
6IM N39 C38  SING N N 31 
6IM C42 C41  SING N N 32 
6IM C42 N43  SING N N 33 
6IM O01 C02  SING N N 34 
6IM C47 C48  SING N N 35 
6IM C47 N46  SING N N 36 
6IM N24 C23  SING Y N 37 
6IM O35 P07  DOUB N N 38 
6IM P09 O34  DOUB N N 39 
6IM P09 O33  SING N N 40 
6IM P09 O08  SING N N 41 
6IM C44 N43  SING N N 42 
6IM C44 C45  SING N N 43 
6IM C05 C03  SING N N 44 
6IM C05 O06  SING N N 45 
6IM C03 C02  SING N N 46 
6IM C03 C37  SING N N 47 
6IM C45 N46  SING N N 48 
6IM C02 C38  SING N N 49 
6IM C38 O51  DOUB N N 50 
6IM O08 P07  SING N N 51 
6IM P07 O06  SING N N 52 
6IM P07 O36  SING N N 53 
6IM C02 H021 SING N N 54 
6IM C04 H043 SING N N 55 
6IM C04 H041 SING N N 56 
6IM C04 H042 SING N N 57 
6IM C05 H052 SING N N 58 
6IM C05 H051 SING N N 59 
6IM C11 H112 SING N N 60 
6IM C11 H111 SING N N 61 
6IM C12 H121 SING N N 62 
6IM C13 H131 SING N N 63 
6IM C14 H141 SING N N 64 
6IM C15 H151 SING N N 65 
6IM C18 H181 SING N N 66 
6IM C23 H231 SING N N 67 
6IM C37 H371 SING N N 68 
6IM C37 H372 SING N N 69 
6IM C37 H373 SING N N 70 
6IM C40 H401 SING N N 71 
6IM C40 H402 SING N N 72 
6IM C41 H411 SING N N 73 
6IM C41 H412 SING N N 74 
6IM C44 H442 SING N N 75 
6IM C44 H441 SING N N 76 
6IM C45 H452 SING N N 77 
6IM C45 H451 SING N N 78 
6IM C48 H483 SING N N 79 
6IM C48 H481 SING N N 80 
6IM C48 H482 SING N N 81 
6IM N26 H262 SING N N 82 
6IM N26 H261 SING N N 83 
6IM N39 H391 SING N N 84 
6IM N43 H431 SING N N 85 
6IM N46 H461 SING N N 86 
6IM O01 H011 SING N N 87 
6IM O27 H271 SING N N 88 
6IM O30 H1   SING N N 89 
6IM O32 H2   SING N N 90 
6IM O33 H3   SING N N 91 
6IM O36 H4   SING N N 92 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
6IM SMILES           ACDLabs              12.01 "CC(=O)NCCNC(=O)CCNC(=O)C(O)C(C)(C)COP(=O)(O)OP(=O)(O)OCC1OC(n2cnc3c(N)ncnc32)C(O)C1OP(=O)(O)O"                                                                                                                                                                                                                             
6IM InChI            InChI                1.03  "InChI=1S/C23H39N8O17P3/c1-12(32)25-6-7-26-14(33)4-5-27-21(36)18(35)23(2,3)9-45-51(42,43)48-50(40,41)44-8-13-17(47-49(37,38)39)16(34)22(46-13)31-11-30-15-19(24)28-10-29-20(15)31/h10-11,13,16-18,22,34-35H,4-9H2,1-3H3,(H,25,32)(H,26,33)(H,27,36)(H,40,41)(H,42,43)(H2,24,28,29)(H2,37,38,39)/t13-,16-,17-,18+,22-/m1/s1" 
6IM InChIKey         InChI                1.03  JFBWXLFTONCRNZ-ZSJPKINUSA-N                                                                                                                                                                                                                                                                                                 
6IM SMILES_CANONICAL CACTVS               3.385 "CC(=O)NCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)CO[P](O)(=O)O[P](O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1O[P](O)(O)=O)n2cnc3c(N)ncnc23"                                                                                                                                                                                                  
6IM SMILES           CACTVS               3.385 "CC(=O)NCCNC(=O)CCNC(=O)[CH](O)C(C)(C)CO[P](O)(=O)O[P](O)(=O)OC[CH]1O[CH]([CH](O)[CH]1O[P](O)(O)=O)n2cnc3c(N)ncnc23"                                                                                                                                                                                                        
6IM SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(=O)NCCNC(=O)CCNC(=O)[C@@H](C(C)(C)COP(=O)(O)OP(=O)(O)OC[C@@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2ncnc3N)O)OP(=O)(O)O)O"                                                                                                                                                                                                      
6IM SMILES           "OpenEye OEToolkits" 2.0.7 "CC(=O)NCCNC(=O)CCNC(=O)C(C(C)(C)COP(=O)(O)OP(=O)(O)OCC1C(C(C(O1)n2cnc3c2ncnc3N)O)OP(=O)(O)O)O"                                                                                                                                                                                                                             
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
6IM "SYSTEMATIC NAME" ACDLabs              12.01 "(3R)-4-({3-[(2-acetamidoethyl)amino]-3-oxopropyl}amino)-3-hydroxy-2,2-dimethyl-4-oxobutyl [(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-4-hydroxy-3-(phosphonooxy)oxolan-2-yl]methyl dihydrogen diphosphate (non-preferred name)"                                 
6IM "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[[(3~{R})-4-[[3-(2-acetamidoethylamino)-3-oxidanylidene-propyl]amino]-2,2-dimethyl-3-oxidanyl-4-oxidanylidene-butoxy]-oxidanyl-phosphoryl] [(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-4-oxidanyl-3-phosphonooxy-oxolan-2-yl]methyl hydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
6IM "Create component" 2021-08-09 RCSB 
6IM "Initial release"  2025-09-03 RCSB 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      6IM 
_pdbx_chem_comp_synonyms.name         "(3R)-4-({3-[(2-acetamidoethyl)amino]-3-oxopropyl}amino)-3-hydroxy-2,2-dimethyl-4-oxobutyl [(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-4-hydroxy-3-(phosphonooxy)oxolan-2-yl]methyl dihydrogen diphosphate (non-preferred name)" 
_pdbx_chem_comp_synonyms.provenance   PDB 
_pdbx_chem_comp_synonyms.type         ? 
# 
