data_WMN
# 
_chem_comp.id                                    WMN 
_chem_comp.name                                  "(4~{S},9~{S},10~{S},13~{E})-4-methyl-9,10,17,19-tetrakis(oxidanyl)-3-oxabicyclo[13.4.0]nonadeca-1(19),13,15,17-tetraene-2,8-dione" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C19 H24 O7" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-10-09 
_chem_comp.pdbx_modified_date                    2025-04-11 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        364.390 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     WMN 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8QR6 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
WMN C1  C1  C 0 1 N N N N N N -14.156 16.375 38.848 -0.079 4.626  0.306  C1  WMN 1  
WMN C2  C2  C 0 1 N N S N N N -13.962 16.163 40.337 0.146  3.240  -0.300 C2  WMN 2  
WMN C3  C3  C 0 1 N N N N N N -12.596 16.604 40.862 1.187  2.484  0.528  C3  WMN 3  
WMN C11 C4  C 0 1 N N N N N N -15.444 20.869 41.845 -0.522 -2.962 0.000  C11 WMN 4  
WMN C12 C5  C 0 1 N N N N N N -15.640 19.561 41.818 -0.718 -1.667 -0.202 C12 WMN 5  
WMN C13 C6  C 0 1 Y N N N N N -16.938 18.876 42.038 -2.071 -1.085 -0.119 C13 WMN 6  
WMN C14 C7  C 0 1 Y N N N N N -17.983 19.641 42.559 -3.193 -1.890 0.018  C14 WMN 7  
WMN C15 C8  C 0 1 Y N N N N N -19.236 19.081 42.779 -4.455 -1.315 0.090  C15 WMN 8  
WMN C16 C9  C 0 1 Y N N N N N -19.481 17.756 42.480 -4.605 0.064  0.027  C16 WMN 9  
WMN C8  C10 C 0 1 N N S N N N -12.961 20.748 43.650 2.710  -1.847 -0.265 C8  WMN 10 
WMN C4  C11 C 0 1 N N N N N N -12.262 16.250 42.314 2.529  2.479  -0.208 C4  WMN 11 
WMN C7  C12 C 0 1 N N S N N N -11.947 19.702 44.117 3.689  -0.970 0.517  C7  WMN 12 
WMN C6  C13 C 0 1 N N N N N N -12.443 18.309 43.742 3.829  0.364  -0.170 C6  WMN 13 
WMN C5  C14 C 0 1 N N N N N N -11.515 17.327 43.076 3.537  1.638  0.578  C5  WMN 14 
WMN C9  C15 C 0 1 N N N N N N -12.933 20.882 42.134 1.833  -2.637 0.709  C9  WMN 15 
WMN C10 C16 C 0 1 N N N N N N -14.164 21.574 41.529 0.872  -3.531 -0.079 C10 WMN 16 
WMN C17 C17 C 0 1 Y N N N N N -18.470 16.974 41.951 -3.496 0.885  -0.096 C17 WMN 17 
WMN C18 C18 C 0 1 Y N N N N N -17.172 17.501 41.715 -2.216 0.317  -0.163 C18 WMN 18 
WMN C19 C19 C 0 1 N N N N N N -16.190 16.549 41.137 -1.018 1.158  -0.267 C19 WMN 19 
WMN O1  O1  O 0 1 N N N N N N -13.601 18.022 43.974 4.176  0.412  -1.326 O1  WMN 20 
WMN O2  O2  O 0 1 N N N N N N -10.676 19.980 43.577 3.196  -0.772 1.843  O2  WMN 21 
WMN O3  O3  O 0 1 N N N N N N -12.629 22.024 44.225 3.442  -2.756 -1.090 O3  WMN 22 
WMN O4  O4  O 0 1 N N N N N N -20.241 19.855 43.292 -5.550 -2.107 0.222  O4  WMN 23 
WMN O5  O5  O 0 1 N N N N N N -18.753 15.680 41.666 -3.648 2.231  -0.152 O5  WMN 24 
WMN O6  O6  O 0 1 N N N N N N -16.509 15.451 40.757 0.076  0.631  -0.328 O6  WMN 25 
WMN O7  O7  O 0 1 N N N N N N -14.933 16.987 41.060 -1.105 2.500  -0.295 O7  WMN 26 
WMN H1  H1  H 0 1 N N N N N N -15.160 16.033 38.556 0.859  5.181  0.303  H1  WMN 27 
WMN H3  H2  H 0 1 N N N N N N -14.051 17.444 38.613 -0.821 5.165  -0.283 H3  WMN 28 
WMN H2  H3  H 0 1 N N N N N N -13.398 15.802 38.294 -0.435 4.521  1.331  H2  WMN 29 
WMN H4  H4  H 0 1 N N N N N N -14.116 15.101 40.577 0.502  3.344  -1.324 H4  WMN 30 
WMN H6  H5  H 0 1 N N N N N N -11.830 16.141 40.223 1.306  2.973  1.494  H6  WMN 31 
WMN H5  H6  H 0 1 N N N N N N -12.541 17.698 40.766 0.854  1.458  0.680  H5  WMN 32 
WMN H17 H7  H 0 1 N N N N N N -16.287 21.485 42.121 -1.359 -3.606 0.224  H17 WMN 33 
WMN H18 H8  H 0 1 N N N N N N -14.781 18.938 41.619 0.121  -1.024 -0.439 H18 WMN 34 
WMN H19 H9  H 0 1 N N N N N N -17.816 20.682 42.794 -3.084 -2.964 0.068  H19 WMN 35 
WMN H21 H10 H 0 1 N N N N N N -20.458 17.332 42.658 -5.592 0.499  0.075  H21 WMN 36 
WMN H11 H11 H 0 1 N N N N N N -13.968 20.438 43.966 2.079  -1.217 -0.891 H11 WMN 37 
WMN H7  H12 H 0 1 N N N N N N -13.205 16.049 42.843 2.396  2.052  -1.202 H7  WMN 38 
WMN H41 H13 H 0 1 N N N N N N -11.642 15.341 42.311 2.898  3.500  -0.298 H41 WMN 39 
WMN H9  H14 H 0 1 N N N N N N -11.894 19.755 45.214 4.661  -1.460 0.560  H9  WMN 40 
WMN H8  H15 H 0 1 N N N N N N -10.895 16.848 43.848 4.460  2.204  0.705  H8  WMN 41 
WMN H51 H16 H 0 1 N N N N N N -10.869 17.873 42.373 3.123  1.396  1.557  H51 WMN 42 
WMN H13 H17 H 0 1 N N N N N N -12.042 21.465 41.858 2.464  -3.256 1.346  H13 WMN 43 
WMN H14 H18 H 0 1 N N N N N N -12.860 19.873 41.702 1.261  -1.945 1.326  H14 WMN 44 
WMN H15 H19 H 0 1 N N N N N N -14.221 22.598 41.926 0.879  -4.535 0.346  H15 WMN 45 
WMN H16 H20 H 0 1 N N N N N N -14.044 21.610 40.436 1.188  -3.575 -1.121 H16 WMN 46 
WMN H10 H21 H 0 1 N N N N N N -10.406 20.854 43.834 3.767  -0.223 2.398  H10 WMN 47 
WMN H12 H22 H 0 1 N N N N N N -13.258 22.675 43.936 2.884  -3.343 -1.619 H12 WMN 48 
WMN H20 H23 H 0 1 N N N N N N -21.029 19.332 43.383 -5.795 -2.288 1.140  H20 WMN 49 
WMN H22 H24 H 0 1 N N N N N N -17.997 15.272 41.260 -3.626 2.666  0.712  H22 WMN 50 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
WMN C1  C2  SING N N 1  
WMN C2  C3  SING N N 2  
WMN C2  O7  SING N N 3  
WMN C3  C4  SING N N 4  
WMN C4  C5  SING N N 5  
WMN C5  C6  SING N N 6  
WMN C6  O1  DOUB N N 7  
WMN C6  C7  SING N N 8  
WMN C7  O2  SING N N 9  
WMN C7  C8  SING N N 10 
WMN C8  O3  SING N N 11 
WMN C8  C9  SING N N 12 
WMN C9  C10 SING N N 13 
WMN C10 C11 SING N N 14 
WMN C11 C12 DOUB N E 15 
WMN C12 C13 SING N N 16 
WMN C13 C14 DOUB Y N 17 
WMN C13 C18 SING Y N 18 
WMN C14 C15 SING Y N 19 
WMN C15 O4  SING N N 20 
WMN C15 C16 DOUB Y N 21 
WMN C16 C17 SING Y N 22 
WMN C17 O5  SING N N 23 
WMN C17 C18 DOUB Y N 24 
WMN C18 C19 SING N N 25 
WMN C19 O6  DOUB N N 26 
WMN C19 O7  SING N N 27 
WMN C1  H1  SING N N 28 
WMN C1  H3  SING N N 29 
WMN C1  H2  SING N N 30 
WMN C2  H4  SING N N 31 
WMN C3  H6  SING N N 32 
WMN C3  H5  SING N N 33 
WMN C11 H17 SING N N 34 
WMN C12 H18 SING N N 35 
WMN C14 H19 SING N N 36 
WMN C16 H21 SING N N 37 
WMN C8  H11 SING N N 38 
WMN C4  H7  SING N N 39 
WMN C4  H41 SING N N 40 
WMN C7  H9  SING N N 41 
WMN C5  H8  SING N N 42 
WMN C5  H51 SING N N 43 
WMN C9  H13 SING N N 44 
WMN C9  H14 SING N N 45 
WMN C10 H15 SING N N 46 
WMN C10 H16 SING N N 47 
WMN O2  H10 SING N N 48 
WMN O3  H12 SING N N 49 
WMN O4  H20 SING N N 50 
WMN O5  H22 SING N N 51 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
WMN InChI            InChI                1.06  "InChI=1S/C19H24O7/c1-11-5-4-8-15(22)18(24)14(21)7-3-2-6-12-9-13(20)10-16(23)17(12)19(25)26-11/h2,6,9-11,14,18,20-21,23-24H,3-5,7-8H2,1H3/t11-,14?,18?/m0/s1" 
WMN InChIKey         InChI                1.06  INPRLQYRFJHNKB-JCDGYTILSA-N                                                                                                                                   
WMN SMILES_CANONICAL CACTVS               3.385 "C[C@H]1CCCC(=O)[C@@H](O)[C@@H](O)CC\C=C\c2cc(O)cc(O)c2C(=O)O1"                                                                                               
WMN SMILES           CACTVS               3.385 "C[CH]1CCCC(=O)[CH](O)[CH](O)CCC=Cc2cc(O)cc(O)c2C(=O)O1"                                                                                                      
WMN SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H]1CCCC(=O)[C@H]([C@H](CC/C=C/c2cc(cc(c2C(=O)O1)O)O)O)O"                                                                                                 
WMN SMILES           "OpenEye OEToolkits" 2.0.7 "CC1CCCC(=O)C(C(CCC=Cc2cc(cc(c2C(=O)O1)O)O)O)O"                                                                                                               
# 
_pdbx_chem_comp_identifier.comp_id           WMN 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(4~{S},9~{S},10~{S},13~{E})-4-methyl-9,10,17,19-tetrakis(oxidanyl)-3-oxabicyclo[13.4.0]nonadeca-1(19),13,15,17-tetraene-2,8-dione" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
WMN "Create component" 2023-10-09 PDBE 
WMN "Modify PCM"       2024-09-27 PDBE 
WMN "Initial release"  2025-04-16 RCSB 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            WMN 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C4 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
