data_ZRN
# 
_chem_comp.id                                    ZRN 
_chem_comp.name                                  "(2R,3S)-3-[(2S)-2-amino-4,4-diethyl-6-oxo-1,3-diazinan-1-yl]-N-[(1R,2R)-2-hydroxy-2,3-dihydro-1H-inden-1-yl]-2-(methoxymethyl)-2-methyl-2,3-dihydro-1-benzofuran-5-carboxamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C29 H36 N4 O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-03-24 
_chem_comp.pdbx_modified_date                    2025-02-21 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        520.620 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     ZRN 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8GM0 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
ZRN C1   C1  C 0 1 Y N N N N N 20.891 33.010 0.933  -0.871 2.562  0.493  C1   ZRN 1  
ZRN C2   C2  C 0 1 N N N N N N 20.280 27.146 -3.944 -6.038 -2.914 -1.520 C2   ZRN 2  
ZRN C3   C3  C 0 1 N N N N N N 27.176 27.325 2.586  7.072  -0.205 -1.561 C3   ZRN 3  
ZRN C5   C4  C 0 1 N N R N N N 18.715 32.311 1.398  -3.097 2.237  0.877  C5   ZRN 4  
ZRN C6   C5  C 0 1 N N N N N N 20.193 28.089 -1.550 -3.769 -2.678 -0.502 C6   ZRN 5  
ZRN C7   C6  C 0 1 N N N N N N 19.607 29.417 -2.066 -3.382 -1.545 -1.458 C7   ZRN 6  
ZRN C8   C7  C 0 1 N N N N N N 19.539 30.499 -1.025 -2.752 -0.415 -0.694 C8   ZRN 7  
ZRN C10  C8  C 0 1 N N N N N N 19.225 28.774 0.650  -3.713 -1.116 1.360  C10  ZRN 8  
ZRN C21  C9  C 0 1 Y N N N N N 21.982 33.816 0.647  0.320  3.078  -0.020 C21  ZRN 9  
ZRN C22  C10 C 0 1 N N N N N N 18.294 32.700 2.802  -4.117 2.634  1.946  C22  ZRN 10 
ZRN C24  C11 C 0 1 N N N N N N 24.762 31.261 1.052  2.458  -0.001 -0.216 C24  ZRN 11 
ZRN C26  C12 C 0 1 N N R N N N 26.324 28.499 3.083  5.668  0.226  -2.037 C26  ZRN 12 
ZRN C28  C13 C 0 1 N N R N N N 26.149 29.402 1.834  4.751  -0.374 -0.950 C28  ZRN 13 
ZRN C29  C14 C 0 1 Y N N N N N 26.239 28.413 0.695  5.614  -0.468 0.290  C29  ZRN 14 
ZRN C30  C15 C 0 1 Y N N N N N 25.809 28.546 -0.622 5.261  -0.626 1.619  C30  ZRN 15 
ZRN C31  C16 C 0 1 Y N N N N N 25.971 27.488 -1.503 6.237  -0.686 2.595  C31  ZRN 16 
ZRN C32  C17 C 0 1 Y N N N N N 26.557 26.309 -1.076 7.570  -0.589 2.244  C32  ZRN 17 
ZRN C13  C18 C 0 1 N N S N N N 19.654 31.070 1.360  -2.360 0.937  1.279  C13  ZRN 18 
ZRN C14  C19 C 0 1 N N N N N N 21.715 28.080 -1.384 -2.513 -3.433 -0.061 C14  ZRN 19 
ZRN C15  C20 C 0 1 N N N N N N 19.818 26.949 -2.507 -4.730 -3.641 -1.202 C15  ZRN 20 
ZRN C16  C21 C 0 1 N N N N N N 22.228 26.892 -0.558 -2.885 -4.457 1.014  C16  ZRN 21 
ZRN C17  C22 C 0 1 Y N N N N N 21.030 31.683 1.262  -0.958 1.199  0.761  C17  ZRN 22 
ZRN C18  C23 C 0 1 Y N N N N N 22.293 31.117 1.324  0.110  0.366  0.538  C18  ZRN 23 
ZRN C19  C24 C 0 1 Y N N N N N 23.410 31.898 1.039  1.303  0.886  0.027  C19  ZRN 24 
ZRN C20  C25 C 0 1 Y N N N N N 23.245 33.245 0.705  1.394  2.253  -0.252 C20  ZRN 25 
ZRN C33  C26 C 0 1 Y N N N N N 26.984 26.178 0.237  7.924  -0.432 0.919  C33  ZRN 26 
ZRN C34  C27 C 0 1 Y N N N N N 26.823 27.236 1.127  6.948  -0.371 -0.061 C34  ZRN 27 
ZRN C35  C28 C 0 1 N N N N N N 17.486 32.216 0.496  -3.776 2.075  -0.484 C35  ZRN 28 
ZRN C36  C29 C 0 1 N N N N N N 15.418 31.801 1.541  -5.198 3.210  -2.046 C36  ZRN 29 
ZRN N11  N1  N 0 1 N N N N N N 18.589 28.364 1.687  -3.753 -1.047 2.659  N11  ZRN 30 
ZRN N27  N2  N 0 1 N N N N N N 24.910 30.166 1.810  3.605  0.506  -0.709 N27  ZRN 31 
ZRN N4   N3  N 0 1 N N N N N N 19.688 27.837 -0.197 -4.430 -2.081 0.672  N4   ZRN 32 
ZRN N9   N4  N 0 1 N N N N N N 19.417 30.093 0.295  -2.954 -0.228 0.618  N9   ZRN 33 
ZRN O12  O1  O 0 1 N N N N N N 19.620 31.677 -1.326 -2.033 0.359  -1.288 O12  ZRN 34 
ZRN O23  O2  O 0 1 N N N N N N 19.575 33.409 0.874  -2.031 3.199  0.807  O23  ZRN 35 
ZRN O25  O3  O 0 1 N N N N N N 25.675 31.717 0.372  2.374  -1.189 0.028  O25  ZRN 36 
ZRN O37  O4  O 0 1 N N N N N N 16.371 32.795 1.146  -4.520 3.257  -0.788 O37  ZRN 37 
ZRN O38  O5  O 0 1 N N N N N N 26.988 29.186 4.145  5.372  -0.333 -3.318 O38  ZRN 38 
ZRN H2C  H1  H 0 1 N N N N N N 19.968 26.284 -4.552 -5.830 -2.048 -2.149 H2C  ZRN 39 
ZRN H2A  H2  H 0 1 N N N N N N 19.830 28.064 -4.351 -6.712 -3.591 -2.046 H2A  ZRN 40 
ZRN H2B  H3  H 0 1 N N N N N N 21.376 27.233 -3.968 -6.506 -2.585 -0.592 H2B  ZRN 41 
ZRN H3A  H4  H 0 1 N N N N N N 26.913 26.396 3.113  7.354  -1.150 -2.024 H3A  ZRN 42 
ZRN H3B  H5  H 0 1 N N N N N N 28.248 27.531 2.720  7.805  0.566  -1.798 H3B  ZRN 43 
ZRN H7A  H6  H 0 1 N N N N N N 20.235 29.774 -2.895 -2.674 -1.921 -2.196 H7A  ZRN 44 
ZRN H7B  H7  H 0 1 N N N N N N 18.588 29.226 -2.434 -4.275 -1.183 -1.968 H7B  ZRN 45 
ZRN H21  H9  H 0 1 N N N N N N 21.853 34.856 0.387  0.397  4.133  -0.238 H21  ZRN 46 
ZRN H22A H10 H 0 0 N N N N N N 19.183 32.767 3.447  -3.621 2.702  2.914  H22A ZRN 47 
ZRN H22B H11 H 0 0 N N N N N N 17.786 33.675 2.775  -4.551 3.601  1.692  H22B ZRN 48 
ZRN H22C H12 H 0 0 N N N N N N 17.607 31.940 3.203  -4.905 1.882  1.993  H22C ZRN 49 
ZRN H26  H13 H 0 1 N N N N N N 25.340 28.129 3.406  5.584  1.313  -2.062 H26  ZRN 50 
ZRN H28  H14 H 0 1 N N N N N N 27.007 30.088 1.779  4.409  -1.365 -1.249 H28  ZRN 51 
ZRN H30  H15 H 0 1 N N N N N N 25.353 29.466 -0.955 4.219  -0.701 1.894  H30  ZRN 52 
ZRN H31  H16 H 0 1 N N N N N N 25.639 27.584 -2.526 5.958  -0.809 3.631  H31  ZRN 53 
ZRN H32  H17 H 0 1 N N N N N N 26.682 25.489 -1.767 8.334  -0.636 3.006  H32  ZRN 54 
ZRN H13  H18 H 0 1 N N N N N N 19.573 30.561 2.332  -2.357 0.810  2.362  H13  ZRN 55 
ZRN H14B H19 H 0 0 N N N N N N 22.175 28.036 -2.382 -2.078 -3.947 -0.918 H14B ZRN 56 
ZRN H14A H20 H 0 0 N N N N N N 22.017 29.011 -0.882 -1.789 -2.726 0.346  H14A ZRN 57 
ZRN H15A H21 H 0 0 N N N N N N 18.722 26.851 -2.510 -4.935 -4.489 -0.549 H15A ZRN 58 
ZRN H15B H22 H 0 0 N N N N N N 20.268 26.020 -2.127 -4.278 -3.996 -2.128 H15B ZRN 59 
ZRN H16B H23 H 0 0 N N N N N N 23.324 26.946 -0.478 -3.402 -3.955 1.831  H16B ZRN 60 
ZRN H16C H24 H 0 0 N N N N N N 21.785 26.927 0.448  -3.538 -5.215 0.582  H16C ZRN 61 
ZRN H16A H25 H 0 0 N N N N N N 21.943 25.952 -1.052 -1.979 -4.930 1.393  H16A ZRN 62 
ZRN H18  H26 H 0 1 N N N N N N 22.410 30.077 1.592  0.030  -0.688 0.756  H18  ZRN 63 
ZRN H20  H27 H 0 1 N N N N N N 24.113 33.850 0.489  2.311  2.661  -0.650 H20  ZRN 64 
ZRN H33  H28 H 0 1 N N N N N N 27.440 25.257 0.568  8.967  -0.356 0.645  H33  ZRN 65 
ZRN H35B H29 H 0 0 N N N N N N 17.274 31.159 0.278  -3.019 1.915  -1.252 H35B ZRN 66 
ZRN H35A H30 H 0 0 N N N N N N 17.680 32.753 -0.444 -4.450 1.219  -0.455 H35A ZRN 67 
ZRN H36B H31 H 0 0 N N N N N N 14.567 32.286 2.042  -4.470 3.073  -2.846 H36B ZRN 68 
ZRN H36C H32 H 0 0 N N N N N N 15.061 31.262 0.651  -5.901 2.377  -2.049 H36C ZRN 69 
ZRN H36A H33 H 0 0 N N N N N N 15.894 31.091 2.233  -5.739 4.143  -2.202 H36A ZRN 70 
ZRN H2   H34 H 0 1 N N N N N N 18.233 29.123 2.233  -3.320 -0.310 3.119  H2   ZRN 71 
ZRN H27  H37 H 0 1 N N N N N N 24.144 29.864 2.378  3.672  1.454  -0.904 H27  ZRN 72 
ZRN H4   H38 H 0 1 N N N N N N 19.688 26.890 0.123  -5.320 -2.349 0.948  H4   ZRN 73 
ZRN H38  H40 H 0 1 N N N N N N 27.078 28.605 4.891  5.976  -0.053 -4.019 H38  ZRN 74 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
ZRN C2  C15  SING N N 1  
ZRN C15 C6   SING N N 2  
ZRN C7  C6   SING N N 3  
ZRN C7  C8   SING N N 4  
ZRN C6  C14  SING N N 5  
ZRN C6  N4   SING N N 6  
ZRN C31 C32  DOUB Y N 7  
ZRN C31 C30  SING Y N 8  
ZRN C14 C16  SING N N 9  
ZRN O12 C8   DOUB N N 10 
ZRN C32 C33  SING Y N 11 
ZRN C8  N9   SING N N 12 
ZRN C30 C29  DOUB Y N 13 
ZRN N4  C10  SING N N 14 
ZRN C33 C34  DOUB Y N 15 
ZRN N9  C10  SING N N 16 
ZRN N9  C13  SING N N 17 
ZRN O25 C24  DOUB N N 18 
ZRN C35 O37  SING N N 19 
ZRN C35 C5   SING N N 20 
ZRN C21 C20  DOUB Y N 21 
ZRN C21 C1   SING Y N 22 
ZRN C10 N11  DOUB N N 23 
ZRN C29 C34  SING Y N 24 
ZRN C29 C28  SING N N 25 
ZRN C20 C19  SING Y N 26 
ZRN O23 C1   SING N N 27 
ZRN O23 C5   SING N N 28 
ZRN C1  C17  DOUB Y N 29 
ZRN C19 C24  SING N N 30 
ZRN C19 C18  DOUB Y N 31 
ZRN C24 N27  SING N N 32 
ZRN C34 C3   SING N N 33 
ZRN O37 C36  SING N N 34 
ZRN C17 C18  SING Y N 35 
ZRN C17 C13  SING N N 36 
ZRN C13 C5   SING N N 37 
ZRN C5  C22  SING N N 38 
ZRN N27 C28  SING N N 39 
ZRN C28 C26  SING N N 40 
ZRN C3  C26  SING N N 41 
ZRN C26 O38  SING N N 42 
ZRN C2  H2C  SING N N 43 
ZRN C2  H2A  SING N N 44 
ZRN C2  H2B  SING N N 45 
ZRN C3  H3A  SING N N 46 
ZRN C3  H3B  SING N N 47 
ZRN C7  H7A  SING N N 48 
ZRN C7  H7B  SING N N 49 
ZRN C21 H21  SING N N 50 
ZRN C22 H22A SING N N 51 
ZRN C22 H22B SING N N 52 
ZRN C22 H22C SING N N 53 
ZRN C26 H26  SING N N 54 
ZRN C28 H28  SING N N 55 
ZRN C30 H30  SING N N 56 
ZRN C31 H31  SING N N 57 
ZRN C32 H32  SING N N 58 
ZRN C13 H13  SING N N 59 
ZRN C14 H14B SING N N 60 
ZRN C14 H14A SING N N 61 
ZRN C15 H15A SING N N 62 
ZRN C15 H15B SING N N 63 
ZRN C16 H16B SING N N 64 
ZRN C16 H16C SING N N 65 
ZRN C16 H16A SING N N 66 
ZRN C18 H18  SING N N 67 
ZRN C20 H20  SING N N 68 
ZRN C33 H33  SING N N 69 
ZRN C35 H35B SING N N 70 
ZRN C35 H35A SING N N 71 
ZRN C36 H36B SING N N 72 
ZRN C36 H36C SING N N 73 
ZRN C36 H36A SING N N 74 
ZRN N11 H2   SING N N 75 
ZRN N27 H27  SING N N 76 
ZRN N4  H4   SING N N 77 
ZRN O38 H38  SING N N 78 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
ZRN SMILES           ACDLabs              12.01 "OC1Cc2ccccc2C1NC(=O)c1cc2c(cc1)OC(C)(COC)C2N1C(=N)NC(CC)(CC)CC1=O"                                                                                                                                                            
ZRN InChI            InChI                1.06  "InChI=1S/C29H36N4O5/c1-5-29(6-2)15-23(35)33(27(30)32-29)25-20-13-18(11-12-22(20)38-28(25,3)16-37-4)26(36)31-24-19-10-8-7-9-17(19)14-21(24)34/h7-13,21,24-25,34H,5-6,14-16H2,1-4H3,(H2,30,32)(H,31,36)/t21-,24-,25+,28+/m1/s1" 
ZRN InChIKey         InChI                1.06  LREJHMJDUFIXDP-IWNAYQHTSA-N                                                                                                                                                                                                    
ZRN SMILES_CANONICAL CACTVS               3.385 "CCC1(CC)CC(=O)N([C@H]2c3cc(ccc3O[C@@]2(C)COC)C(=O)N[C@H]4[C@H](O)Cc5ccccc45)C(=N)N1"                                                                                                                                          
ZRN SMILES           CACTVS               3.385 "CCC1(CC)CC(=O)N([CH]2c3cc(ccc3O[C]2(C)COC)C(=O)N[CH]4[CH](O)Cc5ccccc45)C(=N)N1"                                                                                                                                               
ZRN SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[H]/N=C\1/NC(CC(=O)N1[C@H]2c3cc(ccc3O[C@@]2(C)COC)C(=O)N[C@@H]4c5ccccc5C[C@H]4O)(CC)CC"                                                                                                                                       
ZRN SMILES           "OpenEye OEToolkits" 2.0.7 "CCC1(CC(=O)N(C(=N)N1)C2c3cc(ccc3OC2(C)COC)C(=O)NC4c5ccccc5CC4O)CC"                                                                                                                                                            
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
ZRN "SYSTEMATIC NAME" ACDLabs              12.01 "(2R,3S)-3-[(2Z)-4,4-diethyl-2-imino-6-oxo-1,3-diazinan-1-yl]-N-[(1R,2R)-2-hydroxy-2,3-dihydro-1H-inden-1-yl]-2-(methoxymethyl)-2-methyl-2,3-dihydro-1-benzofuran-5-carboxamide"                         
ZRN "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{R},3~{S})-3-(2-azanylidene-4,4-diethyl-6-oxidanylidene-1,3-diazinan-1-yl)-2-(methoxymethyl)-2-methyl-~{N}-[(1~{R},2~{R})-2-oxidanyl-2,3-dihydro-1~{H}-inden-1-yl]-3~{H}-1-benzofuran-5-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
ZRN "Create component"  2023-03-24 RCSB 
ZRN "Modify descriptor" 2023-04-05 RCSB 
ZRN "Initial release"   2025-02-26 RCSB 
# 
