data_A1BBO
# 
_chem_comp.id                                    A1BBO 
_chem_comp.name                                  "(3R)-3-{[(7H-pyrrolo[2,3-d]pyrimidin-4-yl)amino]methyl}thian-3-ol" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C12 H16 N4 O S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2024-09-30 
_chem_comp.pdbx_modified_date                    2025-06-06 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        264.347 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     A1BBO 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7HFN 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
A1BBO N2  N1  N 0 1 Y N N N N N 15.079 -0.088 3.958  -2.020 -1.775 0.247  N2  A1BBO 1  
A1BBO C3  C1  C 0 1 Y N N N N N 15.204 1.033  3.172  -1.693 -0.506 0.020  C3  A1BBO 2  
A1BBO C6  C2  C 0 1 Y N N N N N 15.379 2.293  3.810  -2.724 0.442  -0.062 C6  A1BBO 3  
A1BBO C9  C3  C 0 1 N N N N N N 13.954 -2.549 0.243  3.154  -1.510 -0.146 C9  A1BBO 4  
A1BBO C12 C4  C 0 1 N N N N N N 12.689 -0.412 0.590  2.251  0.607  0.838  C12 A1BBO 5  
A1BBO C1  C5  C 0 1 N N R N N N 13.830 -1.282 1.147  2.050  -0.461 -0.240 C1  A1BBO 6  
A1BBO C10 C6  C 0 1 N N N N N N 12.719 -3.483 0.322  4.490  -0.930 -0.601 C10 A1BBO 7  
A1BBO C11 C7  C 0 1 N N N N N N 11.416 -2.792 -0.162 5.001  0.079  0.431  C11 A1BBO 8  
A1BBO C2  C8  C 0 1 N N N N N N 15.184 -0.456 1.109  0.691  -1.135 -0.039 C2  A1BBO 9  
A1BBO C4  C9  C 0 1 Y N N N N N 15.091 0.036  5.317  -3.282 -2.138 0.391  C4  A1BBO 10 
A1BBO C5  C10 C 0 1 Y N N N N N 15.388 2.253  5.232  -4.054 0.010  0.097  C5  A1BBO 11 
A1BBO C7  C11 C 0 1 Y N N N N N 15.566 3.686  3.488  -2.789 1.885  -0.290 C7  A1BBO 12 
A1BBO C8  C12 C 0 1 Y N N N N N 15.665 4.411  4.680  -4.088 2.225  -0.257 C8  A1BBO 13 
A1BBO N1  N2  N 0 1 N N N N N N 15.164 0.854  1.787  -0.371 -0.130 -0.129 N1  A1BBO 14 
A1BBO N3  N3  N 0 1 Y N N N N N 15.241 1.158  6.033  -4.280 -1.284 0.321  N3  A1BBO 15 
A1BBO N4  N4  N 0 1 Y N N N N N 15.561 3.528  5.750  -4.854 1.112  -0.025 N4  A1BBO 16 
A1BBO O1  O1  O 0 1 N N N N N N 13.542 -1.671 2.490  2.088  0.153  -1.529 O1  A1BBO 17 
A1BBO S1  S1  S 0 1 N N N N N N 11.061 -1.221 0.730  3.825  1.462  0.531  S1  A1BBO 18 
A1BBO H9  H1  H 0 1 N N N N N N 14.842 -3.117 0.558  3.243  -1.846 0.887  H9  A1BBO 19 
A1BBO H10 H2  H 0 1 N N N N N N 14.079 -2.223 -0.800 2.898  -2.359 -0.778 H10 A1BBO 20 
A1BBO H16 H3  H 0 1 N N N N N N 12.890 -0.205 -0.471 1.432  1.325  0.798  H16 A1BBO 21 
A1BBO H15 H4  H 0 1 N N N N N N 12.662 0.535  1.150  2.277  0.135  1.820  H15 A1BBO 22 
A1BBO H11 H5  H 0 1 N N N N N N 12.583 -3.799 1.367  5.216  -1.735 -0.709 H11 A1BBO 23 
A1BBO H12 H6  H 0 1 N N N N N N 12.904 -4.366 -0.307 4.359  -0.429 -1.560 H12 A1BBO 24 
A1BBO H14 H7  H 0 1 N N N N N N 11.514 -2.571 -1.235 5.081  -0.403 1.405  H14 A1BBO 25 
A1BBO H13 H8  H 0 1 N N N N N N 10.574 -3.482 -0.005 5.978  0.452  0.125  H13 A1BBO 26 
A1BBO H3  H9  H 0 1 N N N N N N 15.965 -1.068 1.584  0.543  -1.890 -0.811 H3  A1BBO 27 
A1BBO H2  H10 H 0 1 N N N N N N 15.444 -0.284 0.054  0.661  -1.609 0.942  H2  A1BBO 28 
A1BBO H5  H11 H 0 1 N N N N N N 14.965 -0.877 5.881  -3.503 -3.179 0.574  H5  A1BBO 29 
A1BBO H6  H12 H 0 1 N N N N N N 15.621 4.101  2.492  -1.953 2.549  -0.453 H6  A1BBO 30 
A1BBO H7  H13 H 0 1 N N N N N N 15.800 5.480  4.757  -4.471 3.226  -0.391 H7  A1BBO 31 
A1BBO H4  H14 H 0 1 N N N N N N 15.953 1.353  1.429  -0.146 0.799  -0.294 H4  A1BBO 32 
A1BBO H8  H15 H 0 1 N N N N N N 15.603 3.769  6.719  -5.822 1.107  0.041  H8  A1BBO 33 
A1BBO H1  H16 H 0 1 N N N N N N 13.468 -0.897 3.035  1.412  0.832  -1.661 H1  A1BBO 34 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
A1BBO C11 C10 SING N N 1  
A1BBO C11 S1  SING N N 2  
A1BBO C9  C10 SING N N 3  
A1BBO C9  C1  SING N N 4  
A1BBO C12 S1  SING N N 5  
A1BBO C12 C1  SING N N 6  
A1BBO C2  C1  SING N N 7  
A1BBO C2  N1  SING N N 8  
A1BBO C1  O1  SING N N 9  
A1BBO N1  C3  SING N N 10 
A1BBO C3  C6  DOUB Y N 11 
A1BBO C3  N2  SING Y N 12 
A1BBO C7  C6  SING Y N 13 
A1BBO C7  C8  DOUB Y N 14 
A1BBO C6  C5  SING Y N 15 
A1BBO N2  C4  DOUB Y N 16 
A1BBO C8  N4  SING Y N 17 
A1BBO C5  N4  SING Y N 18 
A1BBO C5  N3  DOUB Y N 19 
A1BBO C4  N3  SING Y N 20 
A1BBO C9  H9  SING N N 21 
A1BBO C9  H10 SING N N 22 
A1BBO C12 H16 SING N N 23 
A1BBO C12 H15 SING N N 24 
A1BBO C10 H11 SING N N 25 
A1BBO C10 H12 SING N N 26 
A1BBO C11 H14 SING N N 27 
A1BBO C11 H13 SING N N 28 
A1BBO C2  H3  SING N N 29 
A1BBO C2  H2  SING N N 30 
A1BBO C4  H5  SING N N 31 
A1BBO C7  H6  SING N N 32 
A1BBO C8  H7  SING N N 33 
A1BBO N1  H4  SING N N 34 
A1BBO N4  H8  SING N N 35 
A1BBO O1  H1  SING N N 36 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
A1BBO SMILES           ACDLabs              14.52   "OC1(CNc2ncnc3[NH]ccc32)CCCSC1"                                                                                              
A1BBO InChI            InChI                1.06    "InChI=1S/C12H16N4OS/c17-12(3-1-5-18-7-12)6-14-11-9-2-4-13-10(9)15-8-16-11/h2,4,8,17H,1,3,5-7H2,(H2,13,14,15,16)/t12-/m1/s1" 
A1BBO InChIKey         InChI                1.06    NIDUTKUPORUTSY-GFCCVEGCSA-N                                                                                                  
A1BBO SMILES_CANONICAL CACTVS               3.385   "O[C@]1(CCCSC1)CNc2ncnc3[nH]ccc23"                                                                                           
A1BBO SMILES           CACTVS               3.385   "O[C]1(CCCSC1)CNc2ncnc3[nH]ccc23"                                                                                            
A1BBO SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "c1c[nH]c2c1c(ncn2)NC[C@@]3(CCCSC3)O"                                                                                        
A1BBO SMILES           "OpenEye OEToolkits" 3.1.0.0 "c1c[nH]c2c1c(ncn2)NCC3(CCCSC3)O"                                                                                            
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
A1BBO "SYSTEMATIC NAME" ACDLabs              14.52   "(3R)-3-{[(7H-pyrrolo[2,3-d]pyrimidin-4-yl)amino]methyl}thian-3-ol"     
A1BBO "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "(3~{R})-3-[(7~{H}-pyrrolo[2,3-d]pyrimidin-4-ylamino)methyl]thian-3-ol" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
A1BBO "Create component" 2024-09-30 RCSB 
A1BBO "Initial release"  2025-06-11 RCSB 
# 
