data_UXO
# 
_chem_comp.id                                    UXO 
_chem_comp.name                                  "(2~{R},3~{R},4~{S},5~{R})-2-(6-aminopurin-9-yl)-5-[[3-[6-azanyl-9-[(2~{R},3~{R},4~{S},5~{R})-5-(hydroxymethyl)-3,4-bis(oxidanyl)oxolan-2-yl]purin-8-yl]prop-2-ynyl-pent-4-ynyl-amino]methyl]oxolane-3,4-diol" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C28 H33 N11 O7" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-09-07 
_chem_comp.pdbx_modified_date                    2025-03-14 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        635.631 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     UXO 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8QG7 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
UXO N1  N1  N 0 1 Y N N N N N 19.818 4.091  7.645  -7.855 2.611  -0.428 N1  UXO 1  
UXO C7  C1  C 0 1 N N N N N N 14.181 9.738  10.536 -0.977 -2.569 1.100  C7  UXO 2  
UXO C8  C2  C 0 1 N N N N N N 12.997 8.898  12.501 -0.137 -1.296 -0.781 C8  UXO 3  
UXO N2  N2  N 0 1 Y N N N N N 19.374 6.237  8.644  -6.188 1.847  0.979  N2  UXO 4  
UXO C9  C3  C 0 1 N N N N N N 12.960 7.381  12.477 -0.651 -2.377 -1.734 C9  UXO 5  
UXO O1  O1  O 0 1 N N N N N N 19.002 8.338  12.885 2.918  1.176  1.309  O1  UXO 6  
UXO C1  C4  C 0 1 Y N N N N N 20.143 5.194  8.324  -7.214 2.632  0.726  C1  UXO 7  
UXO O5  O2  O 0 1 N N N N N N 15.616 11.498 8.243  -2.887 -2.152 3.792  O5  UXO 8  
UXO C5  C5  C 0 1 N N R N N N 17.099 8.275  8.917  -3.784 -0.241 1.077  C5  UXO 9  
UXO C6  C6  C 0 1 N N R N N N 15.537 9.692  9.859  -1.953 -1.513 1.625  C6  UXO 10 
UXO N3  N3  N 0 1 Y N N N N N 16.307 5.180  7.146  -5.763 -0.015 -1.917 N3  UXO 11 
UXO C4  C7  C 0 1 Y N N N N N 16.024 6.353  7.660  -4.789 -0.524 -1.220 C4  UXO 12 
UXO O4  O3  O 0 1 N N N N N N 19.397 9.460  16.255 3.271  2.647  -1.893 O4  UXO 13 
UXO C3  C8  C 0 1 Y N N N N N 17.643 4.996  7.467  -6.399 0.928  -1.181 C3  UXO 14 
UXO O3  O4  O 0 1 N N N N N N 19.384 6.837  15.813 0.902  2.942  -1.005 O3  UXO 15 
UXO C2  C9  C 0 1 Y N N N N N 18.131 6.079  8.180  -5.751 0.988  0.064  C2  UXO 16 
UXO N4  N4  N 0 1 Y N N N N N 17.078 6.955  8.294  -4.740 0.062  0.010  N4  UXO 17 
UXO N   N5  N 0 1 N N N N N N 18.234 2.847  6.516  -8.168 1.770  -2.610 N   UXO 18 
UXO C   C10 C 0 1 Y N N N N N 18.552 3.954  7.193  -7.490 1.785  -1.403 C   UXO 19 
UXO O   O5  O 0 1 N N N N N N 16.052 8.347  9.870  -2.580 -0.818 0.525  O   UXO 20 
UXO C10 C11 C 0 1 N N N N N N 12.445 6.818  11.161 -1.033 -1.738 -3.071 C10 UXO 21 
UXO C11 C12 C 0 1 N N N N N N 11.316 5.903  11.333 -1.636 -2.755 -3.947 C11 UXO 22 
UXO C12 C13 C 0 1 N N N N N N 10.397 5.190  11.509 -2.117 -3.567 -4.645 C12 UXO 23 
UXO C13 C14 C 0 1 N N N N N N 14.640 10.623 12.789 1.320  -2.839 0.385  C13 UXO 24 
UXO C14 C15 C 0 1 N N N N N N 16.093 10.842 12.856 2.578  -2.082 0.276  C14 UXO 25 
UXO C15 C16 C 0 1 N N N N N N 17.280 10.954 12.918 3.581  -1.478 0.189  C15 UXO 26 
UXO C16 C17 C 0 1 Y N N N N N 18.636 11.358 12.845 4.804  -0.741 0.083  C16 UXO 27 
UXO C17 C18 C 0 1 Y N N N N N 20.433 12.402 12.366 6.921  -0.287 -0.116 C17 UXO 28 
UXO C18 C19 C 0 1 Y N N N N N 20.831 11.208 12.945 6.239  0.939  -0.020 C18 UXO 29 
UXO C19 C20 C 0 1 Y N N N N N 22.962 11.678 12.653 8.244  2.048  -0.197 C19 UXO 30 
UXO C20 C21 C 0 1 Y N N N N N 21.450 13.262 11.912 8.321  -0.258 -0.255 C20 UXO 31 
UXO C21 C22 C 0 1 N N R N N N 19.576 9.205  13.837 3.803  1.580  0.241  C21 UXO 32 
UXO C22 C23 C 0 1 N N R N N N 18.476 7.186  13.582 1.667  1.847  1.041  C22 UXO 33 
UXO C23 C24 C 0 1 N N N N N N 17.161 6.779  12.959 0.519  1.139  1.763  C23 UXO 34 
UXO C24 C25 C 0 1 N N S N N N 18.410 7.561  15.070 1.485  1.744  -0.489 C24 UXO 35 
UXO C25 C26 C 0 1 N N R N N N 18.699 9.069  15.078 2.922  1.565  -1.028 C25 UXO 36 
UXO C26 C27 C 0 1 N N S N N N 15.591 10.083 8.391  -3.118 -2.188 2.382  C26 UXO 37 
UXO C27 C28 C 0 1 N N R N N N 16.904 9.438  7.924  -4.351 -1.332 2.013  C27 UXO 38 
UXO N10 N6  N 0 1 Y N N N N N 19.667 10.536 13.256 4.908  0.628  0.107  N10 UXO 39 
UXO N5  N7  N 0 1 N N N N N N 14.240 9.477  11.980 0.195  -1.904 0.515  N5  UXO 40 
UXO N6  N8  N 0 1 Y N N N N N 19.047 12.497 12.316 5.998  -1.271 -0.045 N6  UXO 41 
UXO N7  N9  N 0 1 Y N N N N N 22.087 10.787 13.121 6.934  2.070  -0.065 N7  UXO 42 
UXO N8  N10 N 0 1 Y N N N N N 22.729 12.860 12.076 8.929  0.923  -0.290 N8  UXO 43 
UXO N9  N11 N 0 1 N N N N N N 21.222 14.440 11.322 9.048  -1.431 -0.354 N9  UXO 44 
UXO O2  O6  O 0 1 N N N N N N 16.179 7.795  13.115 0.681  1.287  3.175  O2  UXO 45 
UXO O6  O7  O 0 1 N N N N N N 17.990 10.354 8.000  -4.918 -0.741 3.184  O6  UXO 46 
UXO H8  H1  H 0 1 N N N N N N 13.747 10.737 10.380 -0.659 -3.210 1.922  H8  UXO 47 
UXO H9  H2  H 0 1 N N N N N N 13.533 8.980  10.071 -1.470 -3.173 0.338  H9  UXO 48 
UXO H10 H3  H 0 1 N N N N N N 12.872 9.230  13.542 0.755  -0.834 -1.204 H10 UXO 49 
UXO H11 H4  H 0 1 N N N N N N 12.160 9.273  11.893 -0.907 -0.539 -0.640 H11 UXO 50 
UXO H12 H5  H 0 1 N N N N N N 13.979 7.003  12.645 0.129  -3.120 -1.896 H12 UXO 51 
UXO H13 H6  H 0 1 N N N N N N 12.302 7.034  13.288 -1.527 -2.858 -1.299 H13 UXO 52 
UXO H6  H7  H 0 1 N N N N N N 21.168 5.250  8.660  -7.544 3.319  1.491  H6  UXO 53 
UXO H30 H8  H 0 1 N N N N N N 15.650 11.720 7.320  -3.589 -2.562 4.316  H30 UXO 54 
UXO H   H9  H 0 1 N N N N N N 18.066 8.418  9.421  -3.548 0.660  1.644  H   UXO 55 
UXO H1  H10 H 0 1 N N N N N N 16.223 10.348 10.415 -1.435 -0.809 2.276  H1  UXO 56 
UXO H7  H11 H 0 1 N N N N N N 15.045 6.805  7.589  -4.119 -1.298 -1.565 H7  UXO 57 
UXO H28 H12 H 0 1 N N N N N N 19.561 10.395 16.231 2.671  2.760  -2.643 H28 UXO 58 
UXO H26 H13 H 0 1 N N N N N N 19.329 7.081  16.730 0.023  3.136  -0.653 H26 UXO 59 
UXO H5  H14 H 0 1 N N N N N N 19.038 2.256  6.447  -8.920 2.367  -2.751 H5  UXO 60 
UXO H4  H15 H 0 1 N N N N N N 17.503 2.361  6.996  -7.892 1.163  -3.314 H4  UXO 61 
UXO H15 H16 H 0 1 N N N N N N 12.124 7.655  10.524 -1.750 -0.935 -2.899 H15 UXO 62 
UXO H14 H17 H 0 1 N N N N N N 13.264 6.275  10.668 -0.140 -1.332 -3.547 H14 UXO 63 
UXO H16 H18 H 0 1 N N N N N N 9.569  4.548  11.668 -2.548 -4.293 -5.270 H16 UXO 64 
UXO H18 H19 H 0 1 N N N N N N 14.176 11.524 12.362 1.185  -3.449 -0.508 H18 UXO 65 
UXO H17 H20 H 0 1 N N N N N N 14.268 10.468 13.813 1.360  -3.485 1.263  H17 UXO 66 
UXO H19 H21 H 0 1 N N N N N N 24.002 11.406 12.754 8.778  2.986  -0.230 H19 UXO 67 
UXO H2  H22 H 0 1 N N N N N N 20.587 8.856  14.093 4.188  2.583  0.426  H2  UXO 68 
UXO H3  H23 H 0 1 N N N N N N 19.181 6.348  13.475 1.723  2.891  1.348  H3  UXO 69 
UXO H23 H24 H 0 1 N N N N N N 17.316 6.592  11.886 -0.429 1.581  1.458  H23 UXO 70 
UXO H22 H25 H 0 1 N N N N N N 16.804 5.858  13.444 0.525  0.080  1.506  H22 UXO 71 
UXO H25 H26 H 0 1 N N N N N N 17.396 7.376  15.454 0.869  0.881  -0.743 H25 UXO 72 
UXO H27 H27 H 0 1 N N N N N N 17.765 9.635  14.949 3.018  0.613  -1.550 H27 UXO 73 
UXO H29 H28 H 0 1 N N N N N N 14.743 9.637  7.851  -3.250 -3.216 2.043  H29 UXO 74 
UXO H31 H29 H 0 1 N N N N N N 16.783 9.041  6.905  -5.093 -1.935 1.491  H31 UXO 75 
UXO H21 H31 H 0 1 N N N N N N 22.094 14.866 11.079 8.593  -2.287 -0.327 H21 UXO 76 
UXO H20 H32 H 0 1 N N N N N N 20.678 14.299 10.495 10.012 -1.398 -0.450 H20 UXO 77 
UXO H24 H33 H 0 1 N N N N N N 15.365 7.513  12.715 -0.013 0.862  3.698  H24 UXO 78 
UXO H32 H34 H 0 1 N N N N N N 18.786 9.927  7.705  -5.289 -1.381 3.807  H32 UXO 79 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
UXO N   C   SING N N 1  
UXO C   N1  DOUB Y N 2  
UXO N1  C1  SING Y N 3  
UXO C1  N2  DOUB Y N 4  
UXO N2  C2  SING Y N 5  
UXO C2  C3  DOUB Y N 6  
UXO C   C3  SING Y N 7  
UXO C3  N3  SING Y N 8  
UXO N3  C4  DOUB Y N 9  
UXO C4  N4  SING Y N 10 
UXO C2  N4  SING Y N 11 
UXO N4  C5  SING N N 12 
UXO C5  O   SING N N 13 
UXO O   C6  SING N N 14 
UXO C7  C6  SING N N 15 
UXO N5  C7  SING N N 16 
UXO C8  N5  SING N N 17 
UXO C9  C8  SING N N 18 
UXO C10 C9  SING N N 19 
UXO C11 C10 SING N N 20 
UXO C12 C11 TRIP N N 21 
UXO C13 N5  SING N N 22 
UXO C14 C13 SING N N 23 
UXO C15 C14 TRIP N N 24 
UXO C16 C15 SING N N 25 
UXO C16 N6  DOUB Y N 26 
UXO N6  C17 SING Y N 27 
UXO C17 C18 DOUB Y N 28 
UXO N7  C18 SING Y N 29 
UXO C19 N7  DOUB Y N 30 
UXO N8  C19 SING Y N 31 
UXO C20 N8  DOUB Y N 32 
UXO C17 C20 SING Y N 33 
UXO N9  C20 SING N N 34 
UXO C18 N10 SING Y N 35 
UXO N10 C16 SING Y N 36 
UXO C21 N10 SING N N 37 
UXO C21 O1  SING N N 38 
UXO O1  C22 SING N N 39 
UXO C23 C22 SING N N 40 
UXO O2  C23 SING N N 41 
UXO C22 C24 SING N N 42 
UXO O3  C24 SING N N 43 
UXO C24 C25 SING N N 44 
UXO C25 C21 SING N N 45 
UXO O4  C25 SING N N 46 
UXO C6  C26 SING N N 47 
UXO O5  C26 SING N N 48 
UXO C26 C27 SING N N 49 
UXO C5  C27 SING N N 50 
UXO C27 O6  SING N N 51 
UXO C7  H8  SING N N 52 
UXO C7  H9  SING N N 53 
UXO C8  H10 SING N N 54 
UXO C8  H11 SING N N 55 
UXO C9  H12 SING N N 56 
UXO C9  H13 SING N N 57 
UXO C1  H6  SING N N 58 
UXO O5  H30 SING N N 59 
UXO C5  H   SING N N 60 
UXO C6  H1  SING N N 61 
UXO C4  H7  SING N N 62 
UXO O4  H28 SING N N 63 
UXO O3  H26 SING N N 64 
UXO N   H5  SING N N 65 
UXO N   H4  SING N N 66 
UXO C10 H15 SING N N 67 
UXO C10 H14 SING N N 68 
UXO C12 H16 SING N N 69 
UXO C13 H18 SING N N 70 
UXO C13 H17 SING N N 71 
UXO C19 H19 SING N N 72 
UXO C21 H2  SING N N 73 
UXO C22 H3  SING N N 74 
UXO C23 H23 SING N N 75 
UXO C23 H22 SING N N 76 
UXO C24 H25 SING N N 77 
UXO C25 H27 SING N N 78 
UXO C26 H29 SING N N 79 
UXO C27 H31 SING N N 80 
UXO N9  H21 SING N N 81 
UXO N9  H20 SING N N 82 
UXO O2  H24 SING N N 83 
UXO O6  H32 SING N N 84 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
UXO InChI            InChI                1.06  "InChI=1S/C28H33N11O7/c1-2-3-4-7-37(9-14-19(41)21(43)27(45-14)38-13-35-17-23(29)31-11-33-25(17)38)8-5-6-16-36-18-24(30)32-12-34-26(18)39(16)28-22(44)20(42)15(10-40)46-28/h1,11-15,19-22,27-28,40-44H,3-4,7-10H2,(H2,29,31,33)(H2,30,32,34)/t14-,15+,19+,20+,21+,22+,27-,28-/m0/s1" 
UXO InChIKey         InChI                1.06  SDRDODQWXHJJNH-JMPZFLAQSA-N                                                                                                                                                                                                                                                         
UXO SMILES_CANONICAL CACTVS               3.385 "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CN(CCCC#C)CC#Cc4nc5c(N)ncnc5n4[C@@H]6O[C@H](CO)[C@@H](O)[C@H]6O)[C@@H](O)[C@H]3O"                                                                                                                                                                    
UXO SMILES           CACTVS               3.385 "Nc1ncnc2n(cnc12)[CH]3O[CH](CN(CCCC#C)CC#Cc4nc5c(N)ncnc5n4[CH]6O[CH](CO)[CH](O)[CH]6O)[CH](O)[CH]3O"                                                                                                                                                                                
UXO SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C#CCCCN(CC#Cc1nc2c(ncnc2n1[C@H]3[C@@H]([C@@H]([C@H](O3)CO)O)O)N)C[C@@H]4[C@H]([C@H]([C@@H](O4)n5cnc6c5ncnc6N)O)O"                                                                                                                                                                  
UXO SMILES           "OpenEye OEToolkits" 2.0.7 "C#CCCCN(CC#Cc1nc2c(ncnc2n1C3C(C(C(O3)CO)O)O)N)CC4C(C(C(O4)n5cnc6c5ncnc6N)O)O"                                                                                                                                                                                                      
# 
_pdbx_chem_comp_identifier.comp_id           UXO 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(2~{R},3~{R},4~{S},5~{R})-2-(6-aminopurin-9-yl)-5-[[3-[6-azanyl-9-[(2~{R},3~{R},4~{S},5~{R})-5-(hydroxymethyl)-3,4-bis(oxidanyl)oxolan-2-yl]purin-8-yl]prop-2-ynyl-pent-4-ynyl-amino]methyl]oxolane-3,4-diol" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
UXO "Create component" 2023-09-07 PDBE 
UXO "Initial release"  2025-03-19 RCSB 
# 
