data_9VP
#

_chem_comp.id                                   9VP
_chem_comp.name                                 "5-acetamido-2,6-anhydro-3,4,5-trideoxy-3-fluoro-D-erythro-L-gluco-nononic acid"
_chem_comp.type                                 D-saccharide
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C11 H18 F N O7"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "5-(acetylamino)-2,6-anhydro-3,4,5-trideoxy-3-fluoro-D-erythro-L-gluco-nononic acid"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2017-06-15
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       295.262
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    9VP
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5W26
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     9VP
_pdbx_chem_comp_synonyms.name        "5-(acetylamino)-2,6-anhydro-3,4,5-trideoxy-3-fluoro-D-erythro-L-gluco-nononic acid"
_pdbx_chem_comp_synonyms.provenance  PDB
_pdbx_chem_comp_synonyms.type        ?
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
9VP  O1B  O1B  O  0  1  N  N  N  22.159  19.989  64.524  -4.501  -0.755  -0.567  O1B  9VP   1  
9VP  C1   C1   C  0  1  N  N  N  23.301  20.130  63.985  -3.418  -0.116  -0.097  C1   9VP   2  
9VP  O1A  O1A  O  0  1  N  N  N  24.103  21.024  64.349  -3.542   0.742   0.745  O1A  9VP   3  
9VP  C2   C2   C  0  1  N  N  R  23.763  19.227  62.869  -2.049  -0.469  -0.619  C2   9VP   4  
9VP  C3   C3   C  0  1  N  N  R  23.121  17.870  63.071  -1.708  -1.909  -0.226  C3   9VP   5  
9VP  F1   F1   F  0  1  N  N  N  23.016  17.711  64.424  -1.772  -2.041   1.165  F1   9VP   6  
9VP  C4   C4   C  0  1  N  N  N  23.882  16.666  62.506  -0.292  -2.240  -0.708  C4   9VP   7  
9VP  O6   O6   O  0  1  N  N  N  25.141  19.113  63.177  -1.081   0.419  -0.056  O6   9VP   8  
9VP  C6   C6   C  0  1  N  N  R  25.881  18.166  62.401   0.255   0.187  -0.507  C6   9VP   9  
9VP  C7   C7   C  0  1  N  N  R  27.339  18.286  62.785   1.195   1.209   0.137  C7   9VP  10  
9VP  C8   C8   C  0  1  N  N  R  27.833  19.710  62.576   0.689   2.623  -0.157  C8   9VP  11  
9VP  C9   C9   C  0  1  N  N  N  29.307  19.835  62.979   1.629   3.645   0.486  C9   9VP  12  
9VP  O9   O9   O  0  1  N  N  N  30.161  19.581  61.856   1.096   4.959   0.311  O9   9VP  13  
9VP  O7   O7   O  0  1  N  N  N  27.477  17.987  64.171   1.230   1.000   1.550  O7   9VP  14  
9VP  C5   C5   C  0  1  N  N  R  25.392  16.745  62.636   0.688  -1.226  -0.109  C5   9VP  15  
9VP  N5   N5   N  0  1  N  N  N  25.910  15.985  61.499   2.036  -1.487  -0.622  N5   9VP  16  
9VP  C10  C10  C  0  1  N  N  N  26.955  15.167  61.541   2.819  -2.405  -0.021  C10  9VP  17  
9VP  O10  O10  O  0  1  N  N  N  27.615  14.942  62.552   2.409  -3.014   0.944  O10  9VP  18  
9VP  C11  C11  C  0  1  N  N  N  27.277  14.522  60.234   4.205  -2.673  -0.548  C11  9VP  19  
9VP  O8   O8   O  0  1  N  N  N  27.598  20.086  61.218   0.654   2.832  -1.571  O8   9VP  20  
9VP  H1   H1   H  0  1  N  N  N  22.046  20.644  65.203  -5.358  -0.495  -0.203  H1   9VP  21  
9VP  H2   H2   H  0  1  N  N  N  23.557  19.646  61.873  -2.039  -0.376  -1.705  H2   9VP  22  
9VP  H3   H3   H  0  1  N  N  N  22.123  17.889  62.610  -2.421  -2.591  -0.690  H3   9VP  23  
9VP  H4   H4   H  0  1  N  N  N  23.635  16.577  61.438  -0.022  -3.244  -0.382  H4   9VP  24  
9VP  H5   H5   H  0  1  N  N  N  23.540  15.766  63.038  -0.255  -2.185  -1.796  H5   9VP  25  
9VP  H6   H6   H  0  1  N  N  N  25.778  18.400  61.331   0.295   0.289  -1.591  H6   9VP  26  
9VP  H7   H7   H  0  1  N  N  N  27.939  17.596  62.174   2.197   1.089  -0.274  H7   9VP  27  
9VP  H8   H8   H  0  1  N  N  N  27.250  20.369  63.236  -0.313   2.743   0.253  H8   9VP  28  
9VP  H9   H9   H  0  1  N  N  N  29.528  19.106  63.773   1.725   3.430   1.550  H9   9VP  29  
9VP  H10  H10  H  0  1  N  N  N  29.494  20.852  63.353   2.609   3.585   0.013  H10  9VP  30  
9VP  H11  H11  H  0  1  N  N  N  31.069  19.663  62.123   1.641   5.659   0.695  H11  9VP  31  
9VP  H12  H12  H  0  1  N  N  N  28.390  18.060  64.422   0.370   1.092   1.982  H12  9VP  32  
9VP  H13  H13  H  0  1  N  N  N  25.739  16.350  63.602   0.687  -1.316   0.977  H13  9VP  33  
9VP  H14  H14  H  0  1  N  N  N  25.441  16.089  60.622   2.364  -1.000  -1.394  H14  9VP  34  
9VP  H15  H15  H  0  1  N  N  N  28.150  13.863  60.355   4.395  -2.036  -1.412  H15  9VP  35  
9VP  H16  H16  H  0  1  N  N  N  26.414  13.929  59.895   4.938  -2.459   0.230  H16  9VP  36  
9VP  H17  H17  H  0  1  N  N  N  27.504  15.298  59.488   4.285  -3.719  -0.844  H17  9VP  37  
9VP  H18  H18  H  0  1  N  N  N  27.903  20.975  61.078   1.514   2.740  -2.003  H18  9VP  38  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
9VP  C11  C10  SING  N  N   1  
9VP  O8   C8   SING  N  N   2  
9VP  N5   C10  SING  N  N   3  
9VP  N5   C5   SING  N  N   4  
9VP  C10  O10  DOUB  N  N   5  
9VP  O9   C9   SING  N  N   6  
9VP  C6   C5   SING  N  N   7  
9VP  C6   C7   SING  N  N   8  
9VP  C6   O6   SING  N  N   9  
9VP  C4   C5   SING  N  N  10  
9VP  C4   C3   SING  N  N  11  
9VP  C8   C7   SING  N  N  12  
9VP  C8   C9   SING  N  N  13  
9VP  C7   O7   SING  N  N  14  
9VP  C2   C3   SING  N  N  15  
9VP  C2   O6   SING  N  N  16  
9VP  C2   C1   SING  N  N  17  
9VP  C3   F1   SING  N  N  18  
9VP  C1   O1A  DOUB  N  N  19  
9VP  C1   O1B  SING  N  N  20  
9VP  O1B  H1   SING  N  N  21  
9VP  C2   H2   SING  N  N  22  
9VP  C3   H3   SING  N  N  23  
9VP  C4   H4   SING  N  N  24  
9VP  C4   H5   SING  N  N  25  
9VP  C6   H6   SING  N  N  26  
9VP  C7   H7   SING  N  N  27  
9VP  C8   H8   SING  N  N  28  
9VP  C9   H9   SING  N  N  29  
9VP  C9   H10  SING  N  N  30  
9VP  O9   H11  SING  N  N  31  
9VP  O7   H12  SING  N  N  32  
9VP  C5   H13  SING  N  N  33  
9VP  N5   H14  SING  N  N  34  
9VP  C11  H15  SING  N  N  35  
9VP  C11  H16  SING  N  N  36  
9VP  C11  H17  SING  N  N  37  
9VP  O8   H18  SING  N  N  38  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
9VP  SMILES            ACDLabs               12.01  "OC(=O)C1C(F)CC(C(O1)C(O)C(CO)O)NC(=O)C"  
9VP  InChI             InChI                 1.03   "InChI=1S/C11H18FNO7/c1-4(15)13-6-2-5(12)9(11(18)19)20-10(6)8(17)7(16)3-14/h5-10,14,16-17H,2-3H2,1H3,(H,13,15)(H,18,19)/t5-,6-,7-,8-,9+,10-/m1/s1"  
9VP  InChIKey          InChI                 1.03   AUOXJUOLLXNWIV-MMDZMLKVSA-N  
9VP  SMILES_CANONICAL  CACTVS                3.385  "CC(=O)N[C@@H]1C[C@@H](F)[C@H](O[C@H]1[C@H](O)[C@H](O)CO)C(O)=O"  
9VP  SMILES            CACTVS                3.385  "CC(=O)N[CH]1C[CH](F)[CH](O[CH]1[CH](O)[CH](O)CO)C(O)=O"  
9VP  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "CC(=O)N[C@@H]1C[C@H]([C@H](O[C@H]1[C@@H]([C@@H](CO)O)O)C(=O)O)F"  
9VP  SMILES            "OpenEye OEToolkits"  2.0.6  "CC(=O)NC1CC(C(OC1C(C(CO)O)O)C(=O)O)F"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
9VP  "SYSTEMATIC NAME"  ACDLabs               12.01  "5-(acetylamino)-2,6-anhydro-3,4,5-trideoxy-3-fluoro-D-erythro-L-gluco-nononic acid"  
9VP  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.6  "(2~{R},3~{R},5~{R},6~{R})-5-acetamido-3-fluoranyl-6-[(1~{R},2~{R})-1,2,3-tris(oxidanyl)propyl]oxane-2-carboxylic acid"  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
9VP  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
9VP  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
9VP  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  ketose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
9VP  "Create component"      2017-06-15  RCSB  
9VP  "Initial release"       2018-02-21  RCSB  
9VP  "Other modification"    2020-07-03  RCSB  
9VP  "Modify name"           2020-07-17  RCSB  
9VP  "Modify synonyms"       2020-07-17  RCSB  
9VP  "Modify internal type"  2020-07-17  RCSB  
9VP  "Modify linking type"   2020-07-17  RCSB  
##
