data_P9Q
#

_chem_comp.id                                   P9Q
_chem_comp.name                                 "(1~{S},2~{R},3~{R},4~{R},5~{R})-5-(8-azanyloctylamino)-4-(hydroxymethyl)cyclohexane-1,2,3-triol"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C15 H32 N2 O4"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-04-20
_chem_comp.pdbx_modified_date                   2021-02-19
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       304.426
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    P9Q
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  Y
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6YQA
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBE
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
P9Q  C7      C1   C  0  1  N  N  N  -15.653  -21.394  -11.069   -0.216  -0.128  -0.180  C7      P9Q   1  
P9Q  O1      O1   O  0  1  N  N  N  -12.805  -20.298  -14.453    5.661   1.423  -0.103  O1      P9Q   2  
P9Q  C10     C2   C  0  1  N  N  N  -16.894  -22.285  -10.991   -1.499   0.353   0.500  C10     P9Q   3  
P9Q  "C1'"   C3   C  0  1  N  N  N  -13.226  -19.668  -10.138    2.579  -1.425   0.451  "C1'"   P9Q   4  
P9Q  "C2'"   C4   C  0  1  N  N  S  -13.055  -18.516  -11.143    3.884  -1.886  -0.201  "C2'"   P9Q   5  
P9Q  "C3'"   C5   C  0  1  N  N  R  -13.452  -18.957  -12.567    4.998  -0.890   0.127  "C3'"   P9Q   6  
P9Q  "C4'"   C6   C  0  1  N  N  R  -12.493  -20.028  -13.058    4.621   0.492  -0.410  "C4'"   P9Q   7  
P9Q  "C5'"   C7   C  0  1  N  N  R  -12.700  -21.279  -12.219    3.316   0.953   0.243  "C5'"   P9Q   8  
P9Q  "C6'"   C8   C  0  1  N  N  N  -11.471  -22.139  -12.347    2.938   2.336  -0.293  "C6'"   P9Q   9  
P9Q  "O2'"   O2   O  0  1  N  N  N  -13.817  -17.393  -10.681    4.237  -3.177   0.299  "O2'"   P9Q  10  
P9Q  "O3'"   O3   O  0  1  N  N  N  -13.548  -17.932  -13.555    6.217  -1.321  -0.483  "O3'"   P9Q  11  
P9Q  "O6'"   O4   O  0  1  N  N  N  -11.507  -23.330  -11.497    3.922   3.289   0.113  "O6'"   P9Q  12  
P9Q  "C7'"   C9   C  0  1  N  N  R  -13.127  -21.115  -10.714    2.202  -0.043  -0.085  "C7'"   P9Q  13  
P9Q  N1      N1   N  0  1  N  N  N  -14.393  -21.895  -10.423    0.949   0.400   0.542  N1      P9Q  14  
P9Q  C11     C10  C  0  1  N  N  N  -17.970  -21.773  -11.987   -2.713  -0.197  -0.251  C11     P9Q  15  
P9Q  C12     C11  C  0  1  N  N  N  -19.425  -22.233  -11.748   -3.996   0.284   0.429  C12     P9Q  16  
P9Q  C13     C12  C  0  1  N  N  N  -20.400  -21.912  -12.894   -5.209  -0.266  -0.322  C13     P9Q  17  
P9Q  C14     C13  C  0  1  N  N  N  -21.879  -22.101  -12.507   -6.492   0.215   0.358  C14     P9Q  18  
P9Q  H71     H1   H  0  1  N  N  N  -15.433  -21.229  -12.134   -0.186  -1.218  -0.170  H71     P9Q  19  
P9Q  H7      H2   H  0  1  N  N  N  -15.907  -20.435  -10.594   -0.197   0.226  -1.211  H7      P9Q  20  
P9Q  H1      H3   H  0  1  N  N  N  -12.218  -20.967  -14.786    6.519   1.193  -0.485  H1      P9Q  21  
P9Q  H101    H4   H  0  0  N  N  N  -17.300  -22.258   -9.969   -1.519  -0.001   1.531  H101    P9Q  22  
P9Q  H10     H5   H  0  1  N  N  N  -16.619  -23.318  -11.249   -1.529   1.443   0.490  H10     P9Q  23  
P9Q  "H1'1"  H6   H  0  0  N  N  N  -12.446  -19.560   -9.370    1.786  -2.134   0.218  "H1'1"  P9Q  24  
P9Q  "H2'"   H7   H  0  1  N  N  N  -11.989  -18.244  -11.162    3.751  -1.939  -1.282  "H2'"   P9Q  25  
P9Q  "H3'"   H8   H  0  1  N  N  N  -14.440  -19.434  -12.481    5.131  -0.837   1.207  "H3'"   P9Q  26  
P9Q  "H4'"   H9   H  0  1  N  N  N  -11.456  -19.676  -12.952    4.487   0.439  -1.490  "H4'"   P9Q  27  
P9Q  "H5'"   H10  H  0  1  N  N  N  -13.518  -21.837  -12.699    3.449   1.007   1.324  "H5'"   P9Q  28  
P9Q  "H6'2"  H11  H  0  0  N  N  N  -11.377  -22.461  -13.395    2.892   2.303  -1.382  "H6'2"  P9Q  29  
P9Q  "H6'1"  H12  H  0  0  N  N  N  -10.593  -21.537  -12.068    1.965   2.626   0.103  "H6'1"  P9Q  30  
P9Q  "HO2'"  H13  H  0  0  N  N  N  -13.538  -17.160   -9.804    5.056  -3.533  -0.072  "HO2'"  P9Q  31  
P9Q  "HO3'"  H14  H  0  0  N  N  N  -14.146  -17.258  -13.255    6.517  -2.192  -0.189  "HO3'"  P9Q  32  
P9Q  "HO6'"  H15  H  0  0  N  N  N  -10.709  -23.831  -11.620    3.747   4.190  -0.192  "HO6'"  P9Q  33  
P9Q  "H7'"   H16  H  0  1  N  N  N  -12.332  -21.606  -10.133    2.069  -0.096  -1.165  "H7'"   P9Q  34  
P9Q  HN1     H17  H  0  1  N  N  N  -14.535  -21.886   -9.433    0.911   1.407   0.602  HN1     P9Q  35  
P9Q  H111    H19  H  0  0  N  N  N  -17.677  -22.109  -12.993   -2.693   0.157  -1.282  H111    P9Q  36  
P9Q  H11     H20  H  0  1  N  N  N  -17.960  -20.674  -11.950   -2.683  -1.287  -0.241  H11     P9Q  37  
P9Q  H121    H21  H  0  0  N  N  N  -19.794  -21.740  -10.837   -4.015  -0.070   1.460  H121    P9Q  38  
P9Q  H12     H22  H  0  1  N  N  N  -19.419  -23.323  -11.599   -4.025   1.374   0.419  H12     P9Q  39  
P9Q  H131    H23  H  0  0  N  N  N  -20.173  -22.576  -13.741   -5.190   0.088  -1.353  H131    P9Q  40  
P9Q  H13     H24  H  0  1  N  N  N  -20.250  -20.865  -13.197   -5.179  -1.356  -0.312  H13     P9Q  41  
P9Q  H14     H25  H  0  1  N  N  N  -22.690  -21.783  -13.179   -6.512  -0.139   1.389  H14     P9Q  42  
P9Q  H141    H26  H  0  0  N  N  N  -22.209  -22.972  -11.921   -6.522   1.305   0.348  H141    P9Q  43  
P9Q  H4      H33  H  0  1  N  N  N  -14.217  -19.561   -9.672    2.713  -1.372   1.532  H4      P9Q  44  
P9Q  C1      C14  C  0  1  N  N  N        ?        ?        ?   -7.706  -0.335  -0.394  C1      P9Q  45  
P9Q  C2      C15  C  0  1  N  N  N        ?        ?        ?   -8.989   0.146   0.287  C2      P9Q  46  
P9Q  N2      N2   N  0  1  N  N  N        ?        ?        ?  -10.154  -0.382  -0.435  N2      P9Q  47  
P9Q  H2      H27  H  0  1  N  N  N        ?        ?        ?   -7.686   0.019  -1.424  H2      P9Q  48  
P9Q  H3      H28  H  0  1  N  N  N        ?        ?        ?   -7.676  -1.425  -0.383  H3      P9Q  49  
P9Q  H5      H29  H  0  1  N  N  N        ?        ?        ?   -9.008  -0.208   1.317  H5      P9Q  50  
P9Q  H6      H30  H  0  1  N  N  N        ?        ?        ?   -9.019   1.236   0.276  H6      P9Q  51  
P9Q  H8      H31  H  0  1  N  N  N        ?        ?        ?  -11.014  -0.078  -0.004  H8      P9Q  52  
P9Q  H9      H32  H  0  1  N  N  N        ?        ?        ?  -10.125  -0.121  -1.409  H9      P9Q  53  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
P9Q  O1     "C4'"   SING  N  N   1  
P9Q  "O3'"  "C3'"   SING  N  N   2  
P9Q  "C4'"  "C3'"   SING  N  N   3  
P9Q  "C4'"  "C5'"   SING  N  N   4  
P9Q  C13    C14     SING  N  N   5  
P9Q  C13    C12     SING  N  N   6  
P9Q  "C3'"  "C2'"   SING  N  N   7  
P9Q  "C6'"  "C5'"   SING  N  N   8  
P9Q  "C6'"  "O6'"   SING  N  N   9  
P9Q  "C5'"  "C7'"   SING  N  N  10  
P9Q  C11    C12     SING  N  N  11  
P9Q  C11    C10     SING  N  N  12  
P9Q  "C2'"  "O2'"   SING  N  N  13  
P9Q  "C2'"  "C1'"   SING  N  N  14  
P9Q  C7     C10     SING  N  N  15  
P9Q  C7     N1      SING  N  N  16  
P9Q  "C7'"  N1      SING  N  N  17  
P9Q  "C7'"  "C1'"   SING  N  N  18  
P9Q  C7     H71     SING  N  N  19  
P9Q  C7     H7      SING  N  N  20  
P9Q  O1     H1      SING  N  N  21  
P9Q  C10    H101    SING  N  N  22  
P9Q  C10    H10     SING  N  N  23  
P9Q  "C1'"  "H1'1"  SING  N  N  24  
P9Q  "C2'"  "H2'"   SING  N  N  25  
P9Q  "C3'"  "H3'"   SING  N  N  26  
P9Q  "C4'"  "H4'"   SING  N  N  27  
P9Q  "C5'"  "H5'"   SING  N  N  28  
P9Q  "C6'"  "H6'2"  SING  N  N  29  
P9Q  "C6'"  "H6'1"  SING  N  N  30  
P9Q  "O2'"  "HO2'"  SING  N  N  31  
P9Q  "O3'"  "HO3'"  SING  N  N  32  
P9Q  "O6'"  "HO6'"  SING  N  N  33  
P9Q  "C7'"  "H7'"   SING  N  N  34  
P9Q  N1     HN1     SING  N  N  35  
P9Q  C11    H111    SING  N  N  36  
P9Q  C11    H11     SING  N  N  37  
P9Q  C12    H121    SING  N  N  38  
P9Q  C12    H12     SING  N  N  39  
P9Q  C13    H131    SING  N  N  40  
P9Q  C13    H13     SING  N  N  41  
P9Q  C14    H14     SING  N  N  42  
P9Q  C14    H141    SING  N  N  43  
P9Q  "C1'"  H4      SING  N  N  44  
P9Q  C14    C1      SING  N  N  45  
P9Q  C1     C2      SING  N  N  46  
P9Q  C2     N2      SING  N  N  47  
P9Q  C1     H2      SING  N  N  48  
P9Q  C1     H3      SING  N  N  49  
P9Q  C2     H5      SING  N  N  50  
P9Q  C2     H6      SING  N  N  51  
P9Q  N2     H8      SING  N  N  52  
P9Q  N2     H9      SING  N  N  53  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
P9Q  InChI             InChI                 1.03   "InChI=1S/C15H32N2O4/c16-7-5-3-1-2-4-6-8-17-12-9-13(19)15(21)14(20)11(12)10-18/h11-15,17-21H,1-10,16H2/t11-,12+,13-,14+,15+/m0/s1"  
P9Q  InChIKey          InChI                 1.03   HEJOCOWXPPQFHY-XPABHHOTSA-N  
P9Q  SMILES_CANONICAL  CACTVS                3.385  "NCCCCCCCCN[C@@H]1C[C@H](O)[C@@H](O)[C@H](O)[C@H]1CO"  
P9Q  SMILES            CACTVS                3.385  "NCCCCCCCCN[CH]1C[CH](O)[CH](O)[CH](O)[CH]1CO"  
P9Q  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "C1[C@H]([C@@H]([C@H]([C@@H]([C@H]1O)O)O)CO)NCCCCCCCCN"  
P9Q  SMILES            "OpenEye OEToolkits"  2.0.7  "C1C(C(C(C(C1O)O)O)CO)NCCCCCCCCN"  
#
_pdbx_chem_comp_identifier.comp_id          P9Q
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "(1~{S},2~{R},3~{R},4~{R},5~{R})-5-(8-azanyloctylamino)-4-(hydroxymethyl)cyclohexane-1,2,3-triol"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
P9Q  "Create component"  2020-04-20  PDBE  
P9Q  "Initial release"   2021-02-24  RCSB  
##
